BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0005.p (506 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3A1.1 B3K3A1_9BACI Phosphoglycerate mutase, 2,3-bisphosphogly... 860 0.0 B1DKZ1.1 B1DKZ1_9BACL Phosphoglycerate mutase, 2,3-bisphosphogly... 766 0.0 C0Z6L4.1 C0Z6L4_BREBN 2,3-bisphosphoglycerate-independent phosph... 717 0.0 Q9K716.1 GPMI_BACHD 2,3-bisphosphoglycerate-independent phosphog... 709 0.0 B4BN44.1 B4BN44_9BACI Phosphoglycerate mutase, 2,3-bisphosphogly... 699 0.0 >B3K3A1.1 B3K3A1_9BACI Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent EC=5.4.2.1 Length = 514 Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/506 (81%), Positives = 439/506 (86%) Query: 1 LIIMDGFGLRNTTEGNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL 60 LIIMDGFGLRNT GNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL Sbjct: 9 LIIMDGFGLRNTEVGNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL 68 Query: 61 NIGAGRIVYQDLTRIDKSIREGEFFENETLVAAVRSAKSTGKKLHLYALVSDGGVHSHIN 120 NIGAGRIVYQDLTRI KSIREGEFFENETLV AVR+AK+ KKLHLY LVSDGGVHSHI Sbjct: 69 NIGAGRIVYQDLTRITKSIREGEFFENETLVEAVRAAKNNNKKLHLYGLVSDGGVHSHIE 128 Query: 121 HLFAMLDLAKKEDMHDVYIHAFMDGRDVPPDSGQKFIKDLIAKIEEVGVGKIATVSGRYF 180 H+FAMLDL KKED HDVYIH FMDGRDV PDSG++F+KDLIAKIEEVGVG+IAT+SGRY+ Sbjct: 129 HMFAMLDLCKKEDFHDVYIHGFMDGRDVAPDSGKQFVKDLIAKIEEVGVGQIATLSGRYY 188 Query: 181 AMDRDKRWERVEKAYRAMVYGEGPKYTDALQAITASYQNSVYDEFVEPSVIVDSEGKPTA 240 AMDRDKRW+RVEKAYRAMVYGEGPKYTD L+AIT SY+ SVYDEFVEP+V+V+ G+P + Sbjct: 189 AMDRDKRWDRVEKAYRAMVYGEGPKYTDPLKAITESYEKSVYDEFVEPTVMVNGAGEPVS 248 Query: 241 TVESGDSVVFLNFRPDRAIQLSQVFTNSDFRGFDRGPLFPQNLHFVCLTTFSETVQGYVA 300 VESGDSV+FLN+RPDRAIQLSQVFTN DFRGFDRGP FPQ+LHFVCLT FSETV+G+VA Sbjct: 249 LVESGDSVIFLNYRPDRAIQLSQVFTNKDFRGFDRGPKFPQSLHFVCLTLFSETVEGFVA 308 Query: 301 YSPKNLDNTLGEVLVQQNKKQLRIAETEKYPHVTFFFSGGRDEELPGETRILINSPKVAT 360 Y PK+LDNTLGEVLVQ NKKQLRIAETEKYPHVTFFFSGGRD ELPGETR+LINSPKVAT Sbjct: 309 YKPKDLDNTLGEVLVQHNKKQLRIAETEKYPHVTFFFSGGRDVELPGETRVLINSPKVAT 368 Query: 361 YDLKPEMSXXXXXXXXXXXXXXDRQDAIILNFANPDMVGHSGMLEPTIKAVEVTDECXXX 420 YDLKPEMS D+ DAIILNFANPDMVGHSGMLEPT+KAVE TDEC Sbjct: 369 YDLKPEMSAYEVADACVREIEADKHDAIILNFANPDMVGHSGMLEPTVKAVETTDECVGK 428 Query: 421 XXXXXXXXXXXXXXXXXHGNADMVFDEQGRPFTAHTTNPVPFIVTTENVVLRESGILADV 480 HGNADMVFDE GRPFTAHTTNPVPFIVT ENV LRE GILAD+ Sbjct: 429 VVDAVLAKGGVVIITADHGNADMVFDENGRPFTAHTTNPVPFIVTDENVTLREGGILADI 488 Query: 481 APTILDLMGLPQPAEMTGQSMIASRK 506 APTILDLMGLP+P EMTG SMIA+RK Sbjct: 489 APTILDLMGLPKPDEMTGTSMIAARK 514 >B1DKZ1.1 B1DKZ1_9BACL Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent EC=5.4.2.1 Length = 511 Score = 766 bits (1978), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/502 (72%), Positives = 410/502 (81%) Query: 1 LIIMDGFGLRNTTEGNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL 60 LII+DGFGLR+ GNAVAQA KPNYDRY YP+TTLTA GEAVGLP+GQMGNSEVGHL Sbjct: 8 LIILDGFGLRDDVTGNAVAQAKKPNYDRYWSTYPHTTLTASGEAVGLPDGQMGNSEVGHL 67 Query: 61 NIGAGRIVYQDLTRIDKSIREGEFFENETLVAAVRSAKSTGKKLHLYALVSDGGVHSHIN 120 NIGAGRIVYQDLTRI KSIR+GEFF+NETL+ AVR AK+ GKKLHLY L+SDGGVHSHI Sbjct: 68 NIGAGRIVYQDLTRISKSIRDGEFFDNETLLGAVRHAKANGKKLHLYGLLSDGGVHSHIA 127 Query: 121 HLFAMLDLAKKEDMHDVYIHAFMDGRDVPPDSGQKFIKDLIAKIEEVGVGKIATVSGRYF 180 HLFA+L+LAKKE++++V+IHAF+DGRDV PDS + +++ L AKIEEVGVG+IATV GRY+ Sbjct: 128 HLFALLELAKKEELNEVFIHAFLDGRDVAPDSAKGYLEQLQAKIEEVGVGQIATVQGRYY 187 Query: 181 AMDRDKRWERVEKAYRAMVYGEGPKYTDALQAITASYQNSVYDEFVEPSVIVDSEGKPTA 240 AMDRDKRWER EK+YRAMVYG+GPKYTD ++A+ SY+ SVYDEFV P+VIV KP Sbjct: 188 AMDRDKRWERTEKSYRAMVYGDGPKYTDPIKAVVESYEKSVYDEFVMPTVIVGENDKPVG 247 Query: 241 TVESGDSVVFLNFRPDRAIQLSQVFTNSDFRGFDRGPLFPQNLHFVCLTTFSETVQGYVA 300 VES DS+VF NFRPDRAIQL QVFTN DFRGFDRG P+NLHFVCLT FSET+ GYVA Sbjct: 248 LVESEDSIVFFNFRPDRAIQLGQVFTNEDFRGFDRGEKCPKNLHFVCLTLFSETIGGYVA 307 Query: 301 YSPKNLDNTLGEVLVQQNKKQLRIAETEKYPHVTFFFSGGRDEELPGETRILINSPKVAT 360 YSPKNLDNTLGEVLVQ NKKQLRIAETEKYPHVTFFFSGGRD ELPGETR+LI+SPKVAT Sbjct: 308 YSPKNLDNTLGEVLVQNNKKQLRIAETEKYPHVTFFFSGGRDVELPGETRVLISSPKVAT 367 Query: 361 YDLKPEMSXXXXXXXXXXXXXXDRQDAIILNFANPDMVGHSGMLEPTIKAVEVTDECXXX 420 YDL+PEMS D+ DAIILNFANPDMVGHSGMLEPTIKAVE TDEC Sbjct: 368 YDLQPEMSAYEVAAAAVREIEADKHDAIILNFANPDMVGHSGMLEPTIKAVEATDECLGQ 427 Query: 421 XXXXXXXXXXXXXXXXXHGNADMVFDEQGRPFTAHTTNPVPFIVTTENVVLRESGILADV 480 HGNADMVFDE GRPFTAHTTNPVP IVT LRE GILAD+ Sbjct: 428 VVEAVLAKGGVAIITADHGNADMVFDENGRPFTAHTTNPVPCIVTVAGGELREGGILADL 487 Query: 481 APTILDLMGLPQPAEMTGQSMI 502 APT+LDL+ L +P +MTG ++I Sbjct: 488 APTVLDLLELVKPEQMTGTTLI 509 >C0Z6L4.1 C0Z6L4_BREBN 2,3-bisphosphoglycerate-independent phosphoglycerate mutase EC=5.4.2.1 Length = 513 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/503 (67%), Positives = 393/503 (78%) Query: 1 LIIMDGFGLRNTTEGNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL 60 L+I+DGF LRN T GNAVAQANKPN+DRY QYP+ TL A G AVGLPEGQMGNSEVGHL Sbjct: 10 LLIVDGFALRNETYGNAVAQANKPNFDRYWNQYPHATLEASGLAVGLPEGQMGNSEVGHL 69 Query: 61 NIGAGRIVYQDLTRIDKSIREGEFFENETLVAAVRSAKSTGKKLHLYALVSDGGVHSHIN 120 NIGAGR+VYQDLTRI KSI+EG F+ENETL+AA + AK GK+LHL+ L+SDGGVHSHI+ Sbjct: 70 NIGAGRVVYQDLTRITKSIKEGAFYENETLIAAFQHAKQNGKQLHLFGLLSDGGVHSHID 129 Query: 121 HLFAMLDLAKKEDMHDVYIHAFMDGRDVPPDSGQKFIKDLIAKIEEVGVGKIATVSGRYF 180 HLFAML+LAKK+D DV+IH F+DGRDV PDS +I+ L AKI E+GVG+IATV GRY+ Sbjct: 130 HLFAMLELAKKQDFADVFIHGFLDGRDVSPDSAVGYIEQLQAKIAELGVGRIATVQGRYY 189 Query: 181 AMDRDKRWERVEKAYRAMVYGEGPKYTDALQAITASYQNSVYDEFVEPSVIVDSEGKPTA 240 AMDRDKRWERVEKAYRAMVY + P Y D +QA+ SY+ S+ DEFV P+VI+D GKP Sbjct: 190 AMDRDKRWERVEKAYRAMVYADAPAYRDPVQAVKESYEKSIMDEFVMPTVILDENGKPVT 249 Query: 241 TVESGDSVVFLNFRPDRAIQLSQVFTNSDFRGFDRGPLFPQNLHFVCLTTFSETVQGYVA 300 TV+SGDS++F NFRPDRAIQ+SQ FTN DFRGFDRG P++LHFVCLT FSETV GYVA Sbjct: 250 TVQSGDSIIFYNFRPDRAIQMSQAFTNEDFRGFDRGDERPRDLHFVCLTHFSETVNGYVA 309 Query: 301 YSPKNLDNTLGEVLVQQNKKQLRIAETEKYPHVTFFFSGGRDEELPGETRILINSPKVAT 360 Y P NLDNTLGEVL Q KQLRIAETEKYPHVTFFFSGGR++E PGE RILI SPKVAT Sbjct: 310 YKPSNLDNTLGEVLSQHGLKQLRIAETEKYPHVTFFFSGGREKEFPGEKRILIPSPKVAT 369 Query: 361 YDLKPEMSXXXXXXXXXXXXXXDRQDAIILNFANPDMVGHSGMLEPTIKAVEVTDECXXX 420 YDL+PEMS D DAIILNFAN DMVGHSGM+EPTIKAVE D C Sbjct: 370 YDLQPEMSAPELTDAVVAEIEADNFDAIILNFANCDMVGHSGMMEPTIKAVETVDACLGR 429 Query: 421 XXXXXXXXXXXXXXXXXHGNADMVFDEQGRPFTAHTTNPVPFIVTTENVVLRESGILADV 480 HGNAD++ DE GRP T+H+T PVP IVT + LRE GILAD+ Sbjct: 430 VVDAIVAKGGVAVITADHGNADLMLDEAGRPITSHSTYPVPVIVTKDGAALREDGILADL 489 Query: 481 APTILDLMGLPQPAEMTGQSMIA 503 +PT+L+L+G+ QP EMTG+S++A Sbjct: 490 SPTLLELLGVAQPVEMTGKSLLA 512 >Q9K716.1 GPMI_BACHD 2,3-bisphosphoglycerate-independent phosphoglycerate mutase EC=5.4.2.1 Length = 510 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/502 (66%), Positives = 392/502 (78%) Query: 1 LIIMDGFGLRNTTEGNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL 60 LII+DGF +R+ +GNAVAQANKPN+DRY QYP+ L A GEAVGLPEGQMGNSEVGHL Sbjct: 8 LIILDGFAMRDEAKGNAVAQANKPNFDRYWNQYPHALLKADGEAVGLPEGQMGNSEVGHL 67 Query: 61 NIGAGRIVYQDLTRIDKSIREGEFFENETLVAAVRSAKSTGKKLHLYALVSDGGVHSHIN 120 NIGAGRIVYQ LTR++ SIREGEFFENET + A+ K G LH+Y LVSDGG+HSHIN Sbjct: 68 NIGAGRIVYQSLTRVNLSIREGEFFENETFLNAMNHVKEKGSSLHIYGLVSDGGIHSHIN 127 Query: 121 HLFAMLDLAKKEDMHDVYIHAFMDGRDVPPDSGQKFIKDLIAKIEEVGVGKIATVSGRYF 180 HL+A+L+LAK+E + VYIH F+DGRDV P S + ++ DL AK++E+GVG++AT+ GRY+ Sbjct: 128 HLYALLELAKREQVERVYIHGFLDGRDVGPTSAESYLVDLEAKMKELGVGELATLHGRYY 187 Query: 181 AMDRDKRWERVEKAYRAMVYGEGPKYTDALQAITASYQNSVYDEFVEPSVIVDSEGKPTA 240 AMDRDKRW+RVEK+YRAMVYGEGP Y+ AL I SY+NS++DEFV PSVI + +G P A Sbjct: 188 AMDRDKRWDRVEKSYRAMVYGEGPAYSSALDVIKDSYENSIHDEFVIPSVITNEDGSPVA 247 Query: 241 TVESGDSVVFLNFRPDRAIQLSQVFTNSDFRGFDRGPLFPQNLHFVCLTTFSETVQGYVA 300 T+E D+++F NFRPDRAIQ+SQVFTN DFRGFDRG PQN+++VCLT FSETVQG VA Sbjct: 248 TIEDDDAIIFFNFRPDRAIQMSQVFTNKDFRGFDRGEKLPQNVYYVCLTHFSETVQGDVA 307 Query: 301 YSPKNLDNTLGEVLVQQNKKQLRIAETEKYPHVTFFFSGGRDEELPGETRILINSPKVAT 360 + P NLDNTLGEVL QQN KQLRIAETEKYPHVTFFFSGGR+E PGE RILI+SPKVAT Sbjct: 308 FKPTNLDNTLGEVLAQQNYKQLRIAETEKYPHVTFFFSGGREEPFPGEERILIDSPKVAT 367 Query: 361 YDLKPEMSXXXXXXXXXXXXXXDRQDAIILNFANPDMVGHSGMLEPTIKAVEVTDECXXX 420 YDLKPEMS D+ D IILNFANPDMVGHSGMLEPTIKAVE DEC Sbjct: 368 YDLKPEMSAYEVTDALLNEIEADKHDVIILNFANPDMVGHSGMLEPTIKAVEAVDECLGK 427 Query: 421 XXXXXXXXXXXXXXXXXHGNADMVFDEQGRPFTAHTTNPVPFIVTTENVVLRESGILADV 480 HGNAD V +G+P TAHTTN VP IVT E + LRE GILAD+ Sbjct: 428 VVDAILAKGGAAVITADHGNADEVVTLEGKPMTAHTTNKVPVIVTEEGLNLREDGILADL 487 Query: 481 APTILDLMGLPQPAEMTGQSMI 502 +PT+LDL+G QPAEMTG+++I Sbjct: 488 SPTVLDLLGGKQPAEMTGKTLI 509 >B4BN44.1 B4BN44_9BACI Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent EC=5.4.2.1 Length = 511 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/502 (66%), Positives = 386/502 (76%) Query: 1 LIIMDGFGLRNTTEGNAVAQANKPNYDRYLKQYPNTTLTACGEAVGLPEGQMGNSEVGHL 60 LII+DGF LR T GNAVAQANKPN+DRY +YP+ TL ACGEAVGLPEGQMGNSEVGHL Sbjct: 8 LIILDGFALREETYGNAVAQANKPNFDRYWNEYPHATLKACGEAVGLPEGQMGNSEVGHL 67 Query: 61 NIGAGRIVYQDLTRIDKSIREGEFFENETLVAAVRSAKSTGKKLHLYALVSDGGVHSHIN 120 NIGAGRIVYQ LTR++ +IREGEF NET +AA+ K G LHL+ L+SDGGVHSHI+ Sbjct: 68 NIGAGRIVYQSLTRVNIAIREGEFDRNETFLAAMNHVKQHGTSLHLFGLLSDGGVHSHIH 127 Query: 121 HLFAMLDLAKKEDMHDVYIHAFMDGRDVPPDSGQKFIKDLIAKIEEVGVGKIATVSGRYF 180 HL+A+L LA KE + VYIH F+DGRDV P + ++IK+L KI+E GVG+IAT+SGRY+ Sbjct: 128 HLYALLRLAAKEGVKRVYIHGFLDGRDVGPQTAPQYIKELQEKIKEYGVGEIATLSGRYY 187 Query: 181 AMDRDKRWERVEKAYRAMVYGEGPKYTDALQAITASYQNSVYDEFVEPSVIVDSEGKPTA 240 +MDRDKRWERVEKAYRAMVYGEGP Y D L+ I SY+N +YDEFV PSVIV +G P A Sbjct: 188 SMDRDKRWERVEKAYRAMVYGEGPTYRDPLECIEDSYKNGIYDEFVLPSVIVREDGSPVA 247 Query: 241 TVESGDSVVFLNFRPDRAIQLSQVFTNSDFRGFDRGPLFPQNLHFVCLTTFSETVQGYVA 300 T++ D+++F NFRPDRAIQ+S FTN DFR FDRGP P+NL FVCLT FSETV+GYVA Sbjct: 248 TIQDNDAIIFYNFRPDRAIQISNTFTNEDFREFDRGPKHPKNLFFVCLTHFSETVKGYVA 307 Query: 301 YSPKNLDNTLGEVLVQQNKKQLRIAETEKYPHVTFFFSGGRDEELPGETRILINSPKVAT 360 + P NLDNT+GEVL Q +QLRIAETEKYPHVTFF SGGR+E+ PGE RILINSPKVAT Sbjct: 308 FKPTNLDNTIGEVLSQHGLRQLRIAETEKYPHVTFFMSGGREEKFPGEDRILINSPKVAT 367 Query: 361 YDLKPEMSXXXXXXXXXXXXXXDRQDAIILNFANPDMVGHSGMLEPTIKAVEVTDECXXX 420 YDLKPEMS D+ DAIILN+ANPDMVGHSGMLEPTIKAVE DEC Sbjct: 368 YDLKPEMSAYEVTEALLKEIAADKYDAIILNYANPDMVGHSGMLEPTIKAVEAVDECLGK 427 Query: 421 XXXXXXXXXXXXXXXXXHGNADMVFDEQGRPFTAHTTNPVPFIVTTENVVLRESGILADV 480 HGNAD V +G+P TAHTTNPVP IVT + LR+ GIL D+ Sbjct: 428 VVDAILEKGGIAIITADHGNADEVLTPEGKPQTAHTTNPVPVIVTKHGIELRKDGILGDL 487 Query: 481 APTILDLMGLPQPAEMTGQSMI 502 APT+LDL+GLPQP EMTG+++I Sbjct: 488 APTMLDLLGLPQPKEMTGKTLI 509 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,854,229,908 Number of extensions: 116213867 Number of successful extensions: 268547 Number of sequences better than 1.0e-05: 1052 Number of HSP's gapped: 263594 Number of HSP's successfully gapped: 1061 Length of query: 506 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 366 Effective length of database: 1,741,754,103 Effective search space: 637482001698 Effective search space used: 637482001698 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)