BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0012.0002.p
         (77 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3G5.1 B3K3G5_9BACI Preprotein translocase, SecG subunit             86   8e-16
B1DKZ3.1 B1DKZ3_9BACL Preprotein translocase, SecG subunit             85   2e-15
B4BN40.1 B4BN40_9BACI Preprotein translocase, SecG subunit             58   3e-07
C5D7M0.1 C5D7M0_9BACI Preprotein translocase, SecG subunit             57   5e-07
C3J5P8.1 C3J5P8_9BACI Preprotein translocase, SecG subunit             57   5e-07

>B3K3G5.1 B3K3G5_9BACI Preprotein translocase, SecG subunit
          Length = 76

 Score = 86.3 bits (212), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 47/75 (62%), Positives = 56/75 (74%)

Query: 1  MDIFLKVLLLIFSVGLIAVVLLQKXXXXXXXXXXXXXXEHLFGKTKARGMELVLQRVTVG 60
          M +F +VLL+IFS+GLI VVLLQK              EHLFGKTKARGM+LVLQR TVG
Sbjct: 1  MVVFFEVLLVIFSIGLITVVLLQKGKSAGLAGAISGGAEHLFGKTKARGMDLVLQRTTVG 60

Query: 61 LAAGFFIMSILVAVL 75
          LAAGF I++I+VA+L
Sbjct: 61 LAAGFMILAIVVAML 75


>B1DKZ3.1 B1DKZ3_9BACL Preprotein translocase, SecG subunit
          Length = 84

 Score = 84.7 bits (208), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 58/76 (76%)

Query: 1  MDIFLKVLLLIFSVGLIAVVLLQKXXXXXXXXXXXXXXEHLFGKTKARGMELVLQRVTVG 60
          M+IF K+LL+IF+VGLIAVVLLQK              EHLFGK KARG++L LQR+TVG
Sbjct: 7  MEIFWKILLVIFAVGLIAVVLLQKGKSAGLSGAITGGAEHLFGKQKARGLDLFLQRLTVG 66

Query: 61 LAAGFFIMSILVAVLV 76
          LA+GFFI++++VA +V
Sbjct: 67 LASGFFILALVVAYVV 82


>B4BN40.1 B4BN40_9BACI Preprotein translocase, SecG subunit
          Length = 78

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 44/73 (60%)

Query: 1  MDIFLKVLLLIFSVGLIAVVLLQKXXXXXXXXXXXXXXEHLFGKTKARGMELVLQRVTVG 60
          M   L  LL+I S+ LIA+VLLQ               E LFGK KARG++ V QRVTV 
Sbjct: 1  MHALLVTLLVIVSIALIAIVLLQSGRSAGLSGAITGGAEQLFGKQKARGLDAVFQRVTVV 60

Query: 61 LAAGFFIMSILVA 73
          LA  FF+++ILVA
Sbjct: 61 LAILFFVLTILVA 73


>C5D7M0.1 C5D7M0_9BACI Preprotein translocase, SecG subunit
          Length = 77

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 43/72 (59%)

Query: 1  MDIFLKVLLLIFSVGLIAVVLLQKXXXXXXXXXXXXXXEHLFGKTKARGMELVLQRVTVG 60
          M   L  LL+I S+GLI +VLLQ               E LFGK KARG++ VLQR+TV 
Sbjct: 1  MHTLLVTLLVIVSIGLIVIVLLQSGRSAGLSGAITGGAEQLFGKQKARGLDAVLQRITVV 60

Query: 61 LAAGFFIMSILV 72
          LA  FF++SI V
Sbjct: 61 LAVLFFVLSIAV 72


>C3J5P8.1 C3J5P8_9BACI Preprotein translocase, SecG subunit
          Length = 78

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 43/72 (59%)

Query: 1  MDIFLKVLLLIFSVGLIAVVLLQKXXXXXXXXXXXXXXEHLFGKTKARGMELVLQRVTVG 60
          M   L  LL+I S+ LIAVVLLQ               E LFGK KARG++ V QRVTV 
Sbjct: 1  MHALLVTLLVIVSIALIAVVLLQSGRSAGLSGAITGGAEQLFGKQKARGLDAVFQRVTVV 60

Query: 61 LAAGFFIMSILV 72
          LA  FF+++ILV
Sbjct: 61 LAVLFFVLTILV 72


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.337    0.151    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 261,996,431
Number of extensions: 5277269
Number of successful extensions: 23404
Number of sequences better than 1.0e-05: 116
Number of HSP's gapped: 23436
Number of HSP's successfully gapped: 116
Length of query: 77
Length of database: 3,060,696,203
Length adjustment: 48
Effective length of query: 29
Effective length of database: 2,608,487,483
Effective search space: 75646137007
Effective search space used: 75646137007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 125 (52.8 bits)