BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0003.p (222 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKC9.1 B3KKC9_9BACI Putative uncharacterized protein 368 e-100 C0ZCN1.1 C0ZCN1_BREBN Putative uncharacterized protein 338 2e-91 Q2B9D7.1 Q2B9D7_9BACI Putative uncharacterized protein 331 3e-89 A1HNR0.1 A1HNR0_9FIRM Putative uncharacterized protein 319 1e-85 B1DLR1.1 B1DLR1_9BACL Putative uncharacterized protein 288 2e-76 >B3KKC9.1 B3KKC9_9BACI Putative uncharacterized protein Length = 223 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 172/223 (77%), Positives = 195/223 (87%), Gaps = 1/223 (0%) Query: 1 MEYSRITSVADPLFRQVHNLLSEVFPPEEVLEYSLWKEPLEDPGIRVFAAVHEGSVVGTT 60 MEY RITS+ DPLFR++H+L+ EVFPPEEVLE+SLWKEPLEDPGIRVF A+HE VVGTT Sbjct: 1 MEYIRITSIDDPLFRKMHDLMKEVFPPEEVLEFSLWKEPLEDPGIRVFVALHEDEVVGTT 60 Query: 61 EYRYYSDWNVAMTDFTIIGREGLGVGRFLAQHRLKDLQKLAADNGKELFGMFAEIYDPYR 120 EYRYY DWNVAMTDFTIIGREGLG+GRFLAQHRLKDL +LAA NGKELFGMFAEIYDPYR Sbjct: 61 EYRYYEDWNVAMTDFTIIGREGLGIGRFLAQHRLKDLNQLAAANGKELFGMFAEIYDPYR 120 Query: 121 VE-HAFGGIKPMDPFVRREVLSHLGYKRLDFPYVHPSWQGDGEAVAGLDLCFMPGDENLE 179 V+ HAFGG+KPMDPFVRREVLSHLGYKR D YVHPSW DGEAV+GLD CFMPGD+ ++ Sbjct: 121 VQDHAFGGVKPMDPFVRREVLSHLGYKRTDIDYVHPSWNNDGEAVSGLDFCFMPGDDAVD 180 Query: 180 QIEAALVAGFLTRYYAVLADKPEAWTSMVEQLKGRDAVSLLPL 222 ++ A L+A FL RYY+VL +KP+AW MV +L R+ VSLLPL Sbjct: 181 ELPAELIANFLRRYYSVLPEKPQAWNDMVAKLDAREKVSLLPL 223 >C0ZCN1.1 C0ZCN1_BREBN Putative uncharacterized protein Length = 223 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 162/223 (72%), Positives = 184/223 (82%), Gaps = 1/223 (0%) Query: 1 MEYSRITSVADPLFRQVHNLLSEVFPPEEVLEYSLWKEPLEDPGIRVFAAVHEGSVVGTT 60 ME+ RI + +PLF ++H L+ EVFPPEEVL Y LWKEPLEDPGIRVF AVHEG VVG T Sbjct: 1 MEFVRIQHIDNPLFAKMHRLMQEVFPPEEVLAYDLWKEPLEDPGIRVFVAVHEGEVVGAT 60 Query: 61 EYRYYSDWNVAMTDFTIIGREGLGVGRFLAQHRLKDLQKLAADNGKELFGMFAEIYDPYR 120 EYRYY+D NVAMTDFTIIGREGLGVGRFLA+ R KDL LAA+NGKEL+GMFAEIYDPYR Sbjct: 61 EYRYYTDMNVAMTDFTIIGREGLGVGRFLARERQKDLLALAAENGKELYGMFAEIYDPYR 120 Query: 121 V-EHAFGGIKPMDPFVRREVLSHLGYKRLDFPYVHPSWQGDGEAVAGLDLCFMPGDENLE 179 V EH+FGGIKPMDPFVRREVLSHLGYKR +F YVHPSWQ DGEAV+GLDL FMP +E Sbjct: 121 VAEHSFGGIKPMDPFVRREVLSHLGYKRTNFTYVHPSWQNDGEAVSGLDLGFMPTNEEQT 180 Query: 180 QIEAALVAGFLTRYYAVLADKPEAWTSMVEQLKGRDAVSLLPL 222 +EA L+ FL RYYAVL KP+AW MV+ L+ ++ V LLP+ Sbjct: 181 TLEADLIVTFLKRYYAVLPQKPQAWLDMVKDLESKEMVELLPI 223 >Q2B9D7.1 Q2B9D7_9BACI Putative uncharacterized protein Length = 223 Score = 331 bits (848), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 182/223 (81%), Gaps = 1/223 (0%) Query: 1 MEYSRITSVADPLFRQVHNLLSEVFPPEEVLEYSLWKEPLEDPGIRVFAAVHEGSVVGTT 60 MEY RITS+ DPLF ++HNL+ +VFPPEEVLEY LWKEPLEDPGIRVF A+ +G VG T Sbjct: 1 MEYIRITSIEDPLFVKMHNLMKDVFPPEEVLEYELWKEPLEDPGIRVFIALEDGEAVGAT 60 Query: 61 EYRYYSDWNVAMTDFTIIGREGLGVGRFLAQHRLKDLQKLAADNGKELFGMFAEIYDPYR 120 EYRYY DWN+AMTDFTIIG+ GL +GRFLA +R KDL+ LA +NGKELFGMFAEIYDPY+ Sbjct: 61 EYRYYPDWNIAMTDFTIIGKPGLSIGRFLAVNRQKDLEGLARENGKELFGMFAEIYDPYQ 120 Query: 121 V-EHAFGGIKPMDPFVRREVLSHLGYKRLDFPYVHPSWQGDGEAVAGLDLCFMPGDENLE 179 H FGG+K M+PFVRREVLSHLGY+RL F YVHPSW+ DGEAV GLDLCFMP +E + Sbjct: 121 AGSHEFGGVKAMNPFVRREVLSHLGYRRLSFEYVHPSWKNDGEAVKGLDLCFMPANEETQ 180 Query: 180 QIEAALVAGFLTRYYAVLADKPEAWTSMVEQLKGRDAVSLLPL 222 +I AAL A FL YY+VL++KP W +MVE LK ++ + LLPL Sbjct: 181 EIPAALAADFLETYYSVLSNKPAEWLAMVEGLKNKETIELLPL 223 >A1HNR0.1 A1HNR0_9FIRM Putative uncharacterized protein Length = 223 Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 150/223 (67%), Positives = 178/223 (79%), Gaps = 1/223 (0%) Query: 1 MEYSRITSVADPLFRQVHNLLSEVFPPEEVLEYSLWKEPLEDPGIRVFAAVHEGSVVGTT 60 MEY RIT + DPLF Q+H L+ ++FP EEVL + LWKEPL DPGIRV+ AVHEG VVG T Sbjct: 1 MEYIRITDITDPLFVQMHRLMQQIFPKEEVLAFDLWKEPLADPGIRVYVAVHEGKVVGAT 60 Query: 61 EYRYYSDWNVAMTDFTIIGREGLGVGRFLAQHRLKDLQKLAADNGKELFGMFAEIYDPYR 120 EYRYY D+NVAMTDFTIIG+ GLG+GRFLAQ R +DL LA + +LFG+FAE+YDPYR Sbjct: 61 EYRYYPDFNVAMTDFTIIGQAGLGIGRFLAQKRQEDLFALAKASNNKLFGVFAEVYDPYR 120 Query: 121 VEH-AFGGIKPMDPFVRREVLSHLGYKRLDFPYVHPSWQGDGEAVAGLDLCFMPGDENLE 179 VE FGGIKPMDPFVRREVLSHLGYKR++ YVHPSW+ DGEAV GLDLCF+P DE Sbjct: 121 VEKFEFGGIKPMDPFVRREVLSHLGYKRINIDYVHPSWKNDGEAVTGLDLCFLPYDEATV 180 Query: 180 QIEAALVAGFLTRYYAVLADKPEAWTSMVEQLKGRDAVSLLPL 222 I A LVA FL RYYAVL +KP+AW M+ +++ +D ++LLPL Sbjct: 181 SISAELVAKFLKRYYAVLPNKPQAWYDMISKIEKQDVLALLPL 223 >B1DLR1.1 B1DLR1_9BACL Putative uncharacterized protein Length = 225 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/221 (61%), Positives = 164/221 (74%), Gaps = 1/221 (0%) Query: 3 YSRITSVADPLFRQVHNLLSEVFPPEEVLEYSLWKEPLEDPGIRVFAAVHEGSVVGTTEY 62 Y RITS+ DP F +H LL +FPPEEVL Y LWKEPLEDP I V+ AV G VVG+TEY Sbjct: 5 YHRITSINDPYFASLHALLKRIFPPEEVLAYELWKEPLEDPSIHVYVAVDNGEVVGSTEY 64 Query: 63 RYYSDWNVAMTDFTIIGREGLGVGRFLAQHRLKDLQKLAADNGKELFGMFAEIYDPYRV- 121 RYY D VAMTDFTIIG G+GRFL + R DL +LA ++G GMFAEIY+PY Sbjct: 65 RYYPDLRVAMTDFTIIGVANKGIGRFLMRGRENDLARLARESGTAPIGMFAEIYNPYESG 124 Query: 122 EHAFGGIKPMDPFVRREVLSHLGYKRLDFPYVHPSWQGDGEAVAGLDLCFMPGDENLEQI 181 EH FGG+ PM+PFVRREVLSH+GYK ++FPYVHPSW+ +GEAV GL+LCF+P DE+L I Sbjct: 125 EHEFGGVTPMNPFVRREVLSHIGYKMINFPYVHPSWEHNGEAVEGLNLCFLPADEDLAAI 184 Query: 182 EAALVAGFLTRYYAVLADKPEAWTSMVEQLKGRDAVSLLPL 222 AALV FL YY+ L +KP+ W MVE L+GRD + LLP+ Sbjct: 185 PAALVVQFLEIYYSALPNKPQQWIDMVEGLRGRDQLELLPI 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,465,141,450 Number of extensions: 64005492 Number of successful extensions: 130913 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 130909 Number of HSP's successfully gapped: 6 Length of query: 222 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 91 Effective length of database: 1,826,543,238 Effective search space: 166215434658 Effective search space used: 166215434658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)