BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0002.p
         (147 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KKD1.1 B3KKD1_9BACI Putative uncharacterized protein                132   1e-29
B1DK81.1 B1DK81_9BACL Putative uncharacterized protein                 97   6e-19
C0WDQ6.1 C0WDQ6_9FIRM Putative uncharacterized protein                 66   1e-09
C0WQL8.1 C0WQL8_LACBU Putative uncharacterized protein                 64   4e-09
C2D1M8.1 C2D1M8_LACBR Putative uncharacterized protein                 62   2e-08

>B3KKD1.1 B3KKD1_9BACI Putative uncharacterized protein
          Length = 141

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 92/142 (64%), Gaps = 2/142 (1%)

Query: 6   SDKYGVSVTLESVQGGERNVVRAAGEVITRGNQLYLRYEETQPGPKDEAVSVRTTVKITD 65
           +D+  VS+ L+S+  GE  +     E   +G  LY+RY E   GP       R  +K+T+
Sbjct: 2   NDRKQVSIRLQSLHEGENTIQELPAEAFIKGKVLYVRYTEPALGPHQG--ETRAMLKLTE 59

Query: 66  NGLKLIRHGGVQSEQSFEPGQRLPGFYRSPYTQFNLSTDTRKLDVKRAGKSLAVAWEYDL 125
           + LKLIRHG V+SEQ+F+ G +LPG+YRSP+T FNLST T++L++   G +   AW YDL
Sbjct: 60  DELKLIRHGEVESEQAFKLGLQLPGYYRSPFTSFNLSTHTQRLELALEGTTGRAAWAYDL 119

Query: 126 YVYGELSGQFAISLHIQEEPQS 147
           YV+ E SG F+ISL IQE  +S
Sbjct: 120 YVFDEFSGHFSISLTIQEAHES 141


>B1DK81.1 B1DK81_9BACL Putative uncharacterized protein
          Length = 148

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 12/149 (8%)

Query: 7   DKYGVSVTLESVQGGERNVVRAAGEVITRGNQLYLRYEETQPGPKDEAVSVRTTVKITDN 66
           D+  V +TL S Q GE  V    GE   +   +Y+RYEE   G    A  +RT V+  ++
Sbjct: 3   DRMAVKITLTSTQDGESVVHTYTGEWFRKERSVYIRYEEPVEG---SASPIRTLVRYRED 59

Query: 67  GLKLIRHGGVQSEQSFEPGQ-RLPGFYRSPYTQFNLSTDTRKLDVK--------RAGKSL 117
            L + R G V+SEQ F PG+ R  G+YRSP+T F + T T  +++K         A    
Sbjct: 60  ELSITRRGVVESEQLFVPGEMRRNGYYRSPFTSFQMETATAFIELKGVDGEKPASAEPPC 119

Query: 118 AVAWEYDLYVYGELSGQFAISLHIQEEPQ 146
           A+ W+Y+L++   LSG+F   LHIQEE Q
Sbjct: 120 AIEWQYELWMNEHLSGRFLNRLHIQEEKQ 148


>C0WDQ6.1 C0WDQ6_9FIRM Putative uncharacterized protein
          Length = 147

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 28  AAGEVITRGNQLYLRYEETQPGPKDEAVSVRTTVKITDNGLKLIRHGGVQSEQSFEPGQR 87
           A G++  +G   Y+RYEE++    D+     TT+K ++  L +IRHG  +  Q +E G+ 
Sbjct: 24  AFGKMTEKGGVTYVRYEESKLTGMDKTT---TTLKWSEQALTIIRHGRFEHRQHYERGRN 80

Query: 88  LPGFYRSPYTQFNLSTDTRKLDVKRAGKSLAVAWEYDLYVYGELSGQFAISLHIQEEPQS 147
               YR+PY    +   TR+L++KR      +  EYD+ +  + +G   +S+ ++EE +S
Sbjct: 81  TLFQYRTPYFSLPMCVFTRQLEMKRGEGRWDLTLEYDMEIDRQPNGSLRLSIVVEEEHKS 140


>C0WQL8.1 C0WQL8_LACBU Putative uncharacterized protein
          Length = 144

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 14/138 (10%)

Query: 11  VSVTLES--VQGGERN--VVRAAGEVITRGNQLYLRY-EETQPGPKDEAVSVRTTVKITD 65
           V + LE+  +Q GER+  V  A G+++  G  +Y+RY EET  G      SV  T+K+ +
Sbjct: 10  VQIHLETNILQNGERSNFVFDATGQLVRVGTSIYIRYQEETDDG------SVPVTIKLME 63

Query: 66  NG-LKLIRHGGVQSEQSFEPGQRLPGFYRSPYTQFNLSTDTRKLDVKRAGKSL--AVAWE 122
           NG +KL R  G + +  F  G+R+   Y +PY Q  + T T  LD++   + L   V  +
Sbjct: 64  NGDVKLTRSAGNRLQLIFSAGKRIAARYATPYGQLEVQTVTSSLDMEILNQPLRGKVGID 123

Query: 123 YDLYVYGELSGQFAISLH 140
           Y LY   +L G++ I L 
Sbjct: 124 YLLYAGSDLLGKYNIRLQ 141


>C2D1M8.1 C2D1M8_LACBR Putative uncharacterized protein
          Length = 144

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 73/138 (52%), Gaps = 14/138 (10%)

Query: 11  VSVTLES--VQGGERN--VVRAAGEVITRGNQLYLRY-EETQPGPKDEAVSVRTTVKITD 65
           V + LE+  +Q GE +  V  A G+++  G  +Y+RY EET  G      SV  T+K+ +
Sbjct: 10  VQIHLETNILQNGETSNFVFDATGQLVRVGTSIYIRYQEETDDG------SVPVTIKLME 63

Query: 66  NG-LKLIRHGGVQSEQSFEPGQRLPGFYRSPYTQFNLSTDTRKLDVKRAGKSL--AVAWE 122
           NG +KL R  G + +  F  G+R+   Y +PY Q  + T T  LD++   + L   V  +
Sbjct: 64  NGDVKLTRSAGNRLQLIFSAGKRIAARYATPYGQLEVQTVTSSLDMEILNQPLRGKVGID 123

Query: 123 YDLYVYGELSGQFAISLH 140
           Y LY   +L G++ I L 
Sbjct: 124 YLLYAGSDLLGKYNIRLQ 141


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 863,419,477
Number of extensions: 32299684
Number of successful extensions: 54430
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 54532
Number of HSP's successfully gapped: 24
Length of query: 147
Length of database: 3,060,696,203
Length adjustment: 110
Effective length of query: 37
Effective length of database: 2,024,384,553
Effective search space: 74902228461
Effective search space used: 74902228461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 125 (52.8 bits)