BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0001.p (547 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KKD2.1 B3KKD2_9BACI Arginyl-tRNA synthetase EC=6.1.1.19 897 0.0 B1DK80.1 B1DK80_9BACL Arginyl-tRNA synthetase EC=6.1.1.19 840 0.0 A8VSJ5.1 A8VSJ5_9BACI Conserved hypothetical integral membrane p... 682 0.0 Q9K6C1.1 SYR1_BACHD Arginyl-tRNA synthetase 1 EC=6.1.1.19 679 0.0 P46906.2 SYR_BACSU Arginyl-tRNA synthetase EC=6.1.1.19 674 0.0 >B3KKD2.1 B3KKD2_9BACI Arginyl-tRNA synthetase EC=6.1.1.19 Length = 559 Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/532 (79%), Positives = 471/532 (88%) Query: 16 TREELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEI 75 +REELPAI LEVPKDK+HGDLATN AMQLT+IAK+NPRQIAEAI+ HLD ASIEKAEI Sbjct: 28 SREELPAITLEVPKDKSHGDLATNVAMQLTRIAKKNPRQIAEAILEHLDTAKASIEKAEI 87 Query: 76 AGPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARG 135 AGPGFINFTL K YLYP++ALV EQGDNYGRI +G+GQ+V+MEFVSANPTGSLHLGHARG Sbjct: 88 AGPGFINFTLDKGYLYPIVALVQEQGDNYGRIASGEGQKVQMEFVSANPTGSLHLGHARG 147 Query: 136 AAVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGE 195 AAVGDALCNVLDFAGYEVTREYYINDAGNQV NL KS+EARYLQELGQ AEMPEDGYHGE Sbjct: 148 AAVGDALCNVLDFAGYEVTREYYINDAGNQVVNLVKSLEARYLQELGQDAEMPEDGYHGE 207 Query: 196 DIKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETS 255 DIKGFAKELVAEKGD+LLSM P +R AF R +GL KEL KIKRDL RFRV FD WFSETS Sbjct: 208 DIKGFAKELVAEKGDSLLSMDPDERTAFLRQFGLEKELGKIKRDLNRFRVHFDEWFSETS 267 Query: 256 LYENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHN 315 LYE+G V +SL+EL+ +GE YE+DGATWL+TT YGDDKDRVL+KNDGTYTYLTPDIAYH Sbjct: 268 LYEDGLVEKSLEELKAKGEAYEKDGATWLRTTDYGDDKDRVLVKNDGTYTYLTPDIAYHR 327 Query: 316 DKYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSK 375 +KY RGYD ++NIWGADHHGY+PRMKAAM ALGNDP+KL+VLIAQMVSLFQ+GEKVKMSK Sbjct: 328 NKYERGYDKILNIWGADHHGYVPRMKAAMEALGNDPDKLIVLIAQMVSLFQDGEKVKMSK 387 Query: 376 RTGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARIC 435 RTGKAVTMEDLMDEVG+DAIRYFFTMRSMDSHLDFDMDLA+STSNENPVFYVQYAHARIC Sbjct: 388 RTGKAVTMEDLMDEVGVDAIRYFFTMRSMDSHLDFDMDLAVSTSNENPVFYVQYAHARIC 447 Query: 436 SIFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVY 495 S+FRQAEEQG+ +A+++ + LTAEHEY +LRK+GELP E+ +AA +YAPHRLIRYVY Sbjct: 448 SVFRQAEEQGVSFLPLADVNLSVLTAEHEYDILRKMGELPQEVSLAAENYAPHRLIRYVY 507 Query: 496 DLASLFHSYYKAERVITEDXXXXXXXXXXXXXXXXXXXNVLRLVGVTAPDRM 547 +LASLFHSYY+AERVITED NVLRL+GV+AP+RM Sbjct: 508 ELASLFHSYYRAERVITEDANQTQARLALLGAVRTVIANVLRLMGVSAPERM 559 >B1DK80.1 B1DK80_9BACL Arginyl-tRNA synthetase EC=6.1.1.19 Length = 559 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/531 (74%), Positives = 449/531 (84%) Query: 17 REELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEIA 76 REELPA VLEVPKDKAHGDLATNAAMQLTK+AK+NPRQIAE II +L+ I+ AEIA Sbjct: 29 REELPAFVLEVPKDKAHGDLATNAAMQLTKLAKKNPRQIAETIIANLNGEKFGIQSAEIA 88 Query: 77 GPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARGA 136 GPGFINF + KSYLY V+ + GD+YGR G GQRVE+EFVSANPTG+LHLGHARGA Sbjct: 89 GPGFINFRMDKSYLYSVVGEITAAGDDYGRTKEGSGQRVEVEFVSANPTGNLHLGHARGA 148 Query: 137 AVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGED 196 AVGDALCNVLDFAGYEVTREYYINDAGNQV NL +SIEARY Q LGQ AEMPEDGYHGED Sbjct: 149 AVGDALCNVLDFAGYEVTREYYINDAGNQVNNLARSIEARYRQALGQDAEMPEDGYHGED 208 Query: 197 IKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETSL 256 I GF K L EKGD+LLS++ +R AFFR +GL KELDKIKRDL FRV FDIW+SETSL Sbjct: 209 IVGFGKLLAEEKGDSLLSLSDEERFAFFRQFGLEKELDKIKRDLGLFRVNFDIWYSETSL 268 Query: 257 YENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHND 316 YE+G+V +L+ L+ +G+VYE++GATWL T YGDDK+RVL+KNDG+YTYLTPDIAYH D Sbjct: 269 YESGQVETALEALKAKGQVYEEEGATWLSTMPYGDDKNRVLVKNDGSYTYLTPDIAYHQD 328 Query: 317 KYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSKR 376 K+ RGYD MINIWGADHHGYIPR+KAAM+ALGNDP+KLVVLIAQMVSLFQ+GEKVKMSKR Sbjct: 329 KFSRGYDKMINIWGADHHGYIPRVKAAMAALGNDPDKLVVLIAQMVSLFQDGEKVKMSKR 388 Query: 377 TGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARICS 436 TGKAVTM+DLMDEVG+DAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARICS Sbjct: 389 TGKAVTMQDLMDEVGVDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARICS 448 Query: 437 IFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVYD 496 IFRQAEEQ + + + +ID+ KL++E E+ LLRK+GELP E+ AA+ YAPHRLIRYVY+ Sbjct: 449 IFRQAEEQSVAILPIGDIDFGKLSSEAEFDLLRKLGELPQEVSEAAAQYAPHRLIRYVYE 508 Query: 497 LASLFHSYYKAERVITEDXXXXXXXXXXXXXXXXXXXNVLRLVGVTAPDRM 547 LAS FHSYYKAERVITED N LRLVGV+AP+RM Sbjct: 509 LASQFHSYYKAERVITEDAAQTQARIALLGAVRIVIANTLRLVGVSAPERM 559 >A8VSJ5.1 A8VSJ5_9BACI Conserved hypothetical integral membrane protein EC=6.1.1.19 Length = 555 Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/521 (61%), Positives = 400/521 (76%), Gaps = 2/521 (0%) Query: 27 VPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEIAGPGFINFTLS 86 PKDK+HGD A+N AMQL ++AK+ P+QIAE I +LD AAS+E EIAGPGF+NFT+ Sbjct: 37 TPKDKSHGDYASNLAMQLARVAKKAPKQIAEDIQANLDLEAASVETVEIAGPGFLNFTMK 96 Query: 87 KSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARGAAVGDALCNVL 146 K YL V+ V + D++G D G G+++++EFVSANPTG+LHLGHARGAAVGDALC++L Sbjct: 97 KDYLADVVKAVLAKQDDFGSTDVGNGKKIQVEFVSANPTGTLHLGHARGAAVGDALCHIL 156 Query: 147 DFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGEDIKGFAKELVA 206 D AGY+VTREYYINDAGNQ+ NL S+EARYLQ LG+ A+MPEDGY G+DI GFA+ELV Sbjct: 157 DKAGYDVTREYYINDAGNQIDNLALSLEARYLQALGEEADMPEDGYQGKDIIGFAEELVD 216 Query: 207 EKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETSLYENGEVLRSL 266 GD P +R AFFR +GL +ELDK+K DL +RV FD+WFSETS+YENG+V L Sbjct: 217 TYGDRFKDADPANRQAFFREFGLKRELDKLKNDLNDYRVHFDVWFSETSVYENGQVEEIL 276 Query: 267 DELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHNDKYGRGYDTMI 326 ++L+ R + YE +GATW ++T YGDDKDRVL+K DG+YTYLTPDIAYHNDK+ RG+D +I Sbjct: 277 EDLKARDKTYEHEGATWFRSTDYGDDKDRVLVKGDGSYTYLTPDIAYHNDKFKRGFDEVI 336 Query: 327 NIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSKRTGKAVTMEDL 386 NIWGADHHGYI RMKAA+ ALG D E+L V I QMV+LF+NGEKVKMSKRTGKAVTM +L Sbjct: 337 NIWGADHHGYIARMKAAVQALGYDEEQLSVQIIQMVNLFENGEKVKMSKRTGKAVTMREL 396 Query: 387 MDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARICSIFRQAEEQGI 446 M+EVGIDA RYFF MR+ D+HLDFD+DLA S SNENPVFYVQYAHARICS+ RQA+E+G Sbjct: 397 MEEVGIDATRYFFAMRAADTHLDFDLDLAKSQSNENPVFYVQYAHARICSMIRQAKEKGF 456 Query: 447 VLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVYDLASLFHSYYK 506 PD + D KLT+E E+ L++K+GE P + AAS PHR+ YV++LA HS+Y Sbjct: 457 E-PDPS-ADLTKLTSEKEHDLMKKLGEFPEAVADAASRRLPHRITNYVHELAQALHSFYN 514 Query: 507 AERVITEDXXXXXXXXXXXXXXXXXXXNVLRLVGVTAPDRM 547 A++VIT+D N L LVGV+AP++M Sbjct: 515 ADKVITDDEALTKARLALVEAVRITLRNGLSLVGVSAPEKM 555 >Q9K6C1.1 SYR1_BACHD Arginyl-tRNA synthetase 1 EC=6.1.1.19 Length = 556 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/548 (59%), Positives = 399/548 (72%), Gaps = 3/548 (0%) Query: 1 LREXXXXXXXXXXXXTREELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAII 60 LRE T E +P ++LE PK+KAHGD ATN AMQL ++AK+ PR IAE + Sbjct: 11 LREEIVVAVKAAGLATDETIPEVILETPKEKAHGDFATNMAMQLARVAKKAPRLIAEELT 70 Query: 61 GHLDKNAASIEKAEIAGPGFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFV 120 LD+ A+IEK EIAGPGFINF L SYL +I V YG + G+G++V++EFV Sbjct: 71 AKLDRKRAAIEKIEIAGPGFINFFLDNSYLREMIPTVLRAESAYGETNVGKGKKVQVEFV 130 Query: 121 SANPTGSLHLGHARGAAVGDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQE 180 SANPTG+LHLGHARGAAVGDALCN+L AGY+V+REYYINDAGNQ+ NL S+EARY Q Sbjct: 131 SANPTGNLHLGHARGAAVGDALCNILAKAGYDVSREYYINDAGNQINNLALSLEARYFQA 190 Query: 181 LGQPAEMPEDGYHGEDIKGFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDL 240 LG +MPEDGYHGEDI F K+L GD + + +R AFFR YGL +EL+KIK DL Sbjct: 191 LGMEKDMPEDGYHGEDIIQFGKDLAETHGDKFVHESSEERLAFFREYGLKRELEKIKSDL 250 Query: 241 TRFRVGFDIWFSETSLYENGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKN 300 FRV FD W+SETSLY G+V ++L+ L+E+G+ YEQDGA W ++T+YGDDKDRVL+KN Sbjct: 251 EEFRVPFDNWYSETSLYTTGKVEKTLNVLKEKGKTYEQDGALWFRSTEYGDDKDRVLVKN 310 Query: 301 DGTYTYLTPDIAYHNDKYGRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQ 360 DG+YTYLTPDI+YH DK+ RG++ +INIWGADHHGYIPRMKAA+ ALG + ++L V I Q Sbjct: 311 DGSYTYLTPDISYHEDKFLRGFEKLINIWGADHHGYIPRMKAAIQALGYEKDQLDVQIIQ 370 Query: 361 MVSLFQNGEKVKMSKRTGKAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSN 420 MVSLFQNGEKVKMSKRTGKAVT+ DLM+EVGIDA RYFF MRS DSHLDFDMDLA+S SN Sbjct: 371 MVSLFQNGEKVKMSKRTGKAVTLRDLMEEVGIDATRYFFAMRSADSHLDFDMDLAVSKSN 430 Query: 421 ENPVFYVQYAHARICSIFRQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGI 480 ENPV+YVQYAHAR+CS+ R+ +E G+ + D + + +E EY LL+KIGE P + Sbjct: 431 ENPVYYVQYAHARVCSMLRKGKELGLSFDE--STDLSPIASEKEYDLLKKIGEFPEVVAE 488 Query: 481 AASSYAPHRLIRYVYDLASLFHSYYKAERVIT-EDXXXXXXXXXXXXXXXXXXXNVLRLV 539 AA PHR+ YV++LAS HS+Y AE+VI E+ N L LV Sbjct: 489 AAQKQMPHRITNYVHELASTLHSFYNAEQVINPENDEQSKARLALMKATQVTLKNALSLV 548 Query: 540 GVTAPDRM 547 GV AP+RM Sbjct: 549 GVEAPERM 556 >P46906.2 SYR_BACSU Arginyl-tRNA synthetase EC=6.1.1.19 Length = 556 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/530 (59%), Positives = 395/530 (74%), Gaps = 3/530 (0%) Query: 19 ELPAIVLEVPKDKAHGDLATNAAMQLTKIAKRNPRQIAEAIIGHLDKNAASIEKAEIAGP 78 ++P +VLE PKDK HGD +TN AMQL ++AK+ PRQIAE I+ H DK ASIEK +IAGP Sbjct: 29 QIPNVVLETPKDKTHGDYSTNMAMQLARVAKKAPRQIAEEIVAHFDKGKASIEKLDIAGP 88 Query: 79 GFINFTLSKSYLYPVIALVAEQGDNYGRIDAGQGQRVEMEFVSANPTGSLHLGHARGAAV 138 GFINF ++ YL +I V E G+ YG + G G+RV++EFVSANPTG LHLGHARGAAV Sbjct: 89 GFINFYMNNQYLTKLIPSVLEAGEAYGETNIGNGERVQVEFVSANPTGDLHLGHARGAAV 148 Query: 139 GDALCNVLDFAGYEVTREYYINDAGNQVANLCKSIEARYLQELGQPAEMPEDGYHGEDIK 198 GD+LCNVL AGY+V+REYYINDAGNQ+ NL S+E RY + LG MPEDGY GEDI Sbjct: 149 GDSLCNVLSKAGYDVSREYYINDAGNQINNLALSVEVRYFEALGLEKPMPEDGYRGEDII 208 Query: 199 GFAKELVAEKGDALLSMTPGDRAAFFRTYGLTKELDKIKRDLTRFRVGFDIWFSETSLYE 258 K L E GD ++ +R AFFR YGL EL+K+++DL FRV FD+W+SETSLY+ Sbjct: 209 AIGKRLAEEYGDRFVNEEESERLAFFREYGLKYELEKLRKDLENFRVPFDVWYSETSLYQ 268 Query: 259 NGEVLRSLDELRERGEVYEQDGATWLQTTKYGDDKDRVLIKNDGTYTYLTPDIAYHNDKY 318 NG++ ++L+ LRE+G VYE+DGATW ++T +GDDKDRVLIK DGTYTYL PDIAYH DK Sbjct: 269 NGKIDKALEALREKGHVYEEDGATWFRSTTFGDDKDRVLIKKDGTYTYLLPDIAYHKDKL 328 Query: 319 GRGYDTMINIWGADHHGYIPRMKAAMSALGNDPEKLVVLIAQMVSLFQNGEKVKMSKRTG 378 RG+D +IN+WGADHHGYIPRMKAA+ ALG + L V I Q+V L++NGEK+KMSKRTG Sbjct: 329 DRGFDKLINVWGADHHGYIPRMKAAIEALGYEKGTLEVEIIQLVHLYKNGEKMKMSKRTG 388 Query: 379 KAVTMEDLMDEVGIDAIRYFFTMRSMDSHLDFDMDLAISTSNENPVFYVQYAHARICSIF 438 KAVTM DL++EVG+DA+RYFF MRS D+H+DFD+DLA+STSNENPV+Y QYAHARICS+ Sbjct: 389 KAVTMRDLIEEVGLDAVRYFFAMRSADTHMDFDLDLAVSTSNENPVYYAQYAHARICSML 448 Query: 439 RQAEEQGIVLPDVAEIDYAKLTAEHEYALLRKIGELPAEIGIAASSYAPHRLIRYVYDLA 498 RQ EEQG L A++D++ + +E EY LL+ IG P + AA PHR+ Y+YDLA Sbjct: 449 RQGEEQG--LKPAADLDFSHIQSEKEYDLLKTIGGFPEAVAEAAEKRIPHRVTNYIYDLA 506 Query: 499 SLFHSYYKAERVI-TEDXXXXXXXXXXXXXXXXXXXNVLRLVGVTAPDRM 547 S HS+Y AE+VI E+ N L+L+GV+AP++M Sbjct: 507 SALHSFYNAEKVIDPENEEKSRARLALMKATQITLNNALQLIGVSAPEKM 556 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,114,079,754 Number of extensions: 133212273 Number of successful extensions: 337867 Number of sequences better than 1.0e-05: 1861 Number of HSP's gapped: 331372 Number of HSP's successfully gapped: 2100 Length of query: 547 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 406 Effective length of database: 1,732,333,088 Effective search space: 703327233728 Effective search space used: 703327233728 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)