BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0005.p
         (82 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8U6.1 B3K8U6_9BACI Putative uncharacterized protein                122   1e-26
B1DC01.1 B1DC01_9BACL Putative uncharacterized protein                116   8e-25
Q9RC98.1 Q9RC98_BACHD YyaB protein                                     83   7e-15
C0ZH41.1 C0ZH41_BREBN Putative uncharacterized protein                 72   1e-11
B4AKD5.1 B4AKD5_BACPU YaaB                                             70   7e-11

>B3K8U6.1 B3K8U6_9BACI Putative uncharacterized protein
          Length = 83

 Score =  122 bits (306), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/76 (78%), Positives = 69/76 (90%)

Query: 1  MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTKN 60
          MYIHLGGEKIIRSSEL+ IFDISIEKSSK+SKQF+ H++Q K +E IGEE+ KSIVVTK+
Sbjct: 1  MYIHLGGEKIIRSSELVGIFDISIEKSSKISKQFVTHAQQHKVVELIGEEDPKSIVVTKS 60

Query: 61 TVYYSPISSSTLKKRA 76
           VYYSPISS+TLKKRA
Sbjct: 61 IVYYSPISSATLKKRA 76


>B1DC01.1 B1DC01_9BACL Putative uncharacterized protein
          Length = 83

 Score =  116 bits (290), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 57/76 (75%), Positives = 67/76 (88%)

Query: 1  MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTKN 60
          MYIHLGGEKIIR++EL+AIFDISIE+SSK+SKQF+  + + K +E IGEEE KSIVVTK 
Sbjct: 1  MYIHLGGEKIIRAAELVAIFDISIEQSSKLSKQFVAGARKRKDVETIGEEEPKSIVVTKQ 60

Query: 61 TVYYSPISSSTLKKRA 76
           +YYSPISSSTLKKRA
Sbjct: 61 KIYYSPISSSTLKKRA 76


>Q9RC98.1 Q9RC98_BACHD YyaB protein
          Length = 89

 Score = 83.2 bits (204), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 61/82 (74%)

Query: 1  MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTKN 60
          M+IHLGG+ +IRS ++IAI D  +E+SS V+K+++ H +++  +  I  +  KSIVVT +
Sbjct: 1  MFIHLGGDHVIRSKDVIAILDRDMEQSSGVTKEYLEHHQKNGNIVTISSDLIKSIVVTPD 60

Query: 61 TVYYSPISSSTLKKRAKILLEI 82
          T+YYSPISS TLK+R+  + E+
Sbjct: 61 TIYYSPISSVTLKRRSHAVSEL 82


>C0ZH41.1 C0ZH41_BREBN Putative uncharacterized protein
          Length = 95

 Score = 72.0 bits (175), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 56/79 (70%), Gaps = 2/79 (2%)

Query: 1  MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTKN 60
          M+IH+GG+ ++ + E+I+I D    KSSK++K F++  E+ K +    EEE KS V+T+N
Sbjct: 1  MFIHIGGDTVVSTKEVISILDHQTVKSSKINKAFLL--EKSKTVVDHSEEETKSYVITQN 58

Query: 61 TVYYSPISSSTLKKRAKIL 79
           +Y SPISS TLK+RA+ +
Sbjct: 59 AIYCSPISSLTLKRRAQFV 77


>B4AKD5.1 B4AKD5_BACPU YaaB
          Length = 81

 Score = 69.7 bits (169), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 1  MYIHLGGEKIIRSSELIAIFDISIEKSSKVSKQFIVHSEQDKKLERIGEEEAKSIVVTKN 60
          MYIHLG + ++ + E++AI D  + +SS V ++F++  +Q+ ++  + +   KSIVVT  
Sbjct: 1  MYIHLGDDCVVSTREIVAIVDYKM-RSSSVVEEFLL--KQEGQIISLSQGTPKSIVVTTK 57

Query: 61 TVYYSPISSSTLKKRAKILLEI 82
          +VYYSP+SSSTLKKRA  ++EI
Sbjct: 58 SVYYSPLSSSTLKKRASFVIEI 79


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.328 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 359,827,837
Number of extensions: 10078329
Number of successful extensions: 32072
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 32028
Number of HSP's successfully gapped: 65
Length of query: 82
Length of database: 3,060,696,203
Length adjustment: 52
Effective length of query: 30
Effective length of database: 2,570,803,423
Effective search space: 77124102690
Effective search space used: 77124102690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)