BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0004.p (634 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8U7.1 B3K8U7_9BACI DNA gyrase subunit B EC=5.99.1.3 1088 0.0 B1DC00.1 B1DC00_9BACL DNA gyrase subunit B EC=5.99.1.3 1033 0.0 A8F8Y9.1 A8F8Y9_BACP2 DNA gyrase subunit B EC=5.99.1.3 853 0.0 Q630A8.1 Q630A8_BACLD DNA gyrase subunit B EC=5.99.1.3 850 0.0 Q65PL7.1 Q65PL7_BACLD DNA gyrase subunit B EC=5.99.1.3 849 0.0 >B3K8U7.1 B3K8U7_9BACI DNA gyrase subunit B EC=5.99.1.3 Length = 636 Score = 1088 bits (2814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/634 (82%), Positives = 565/634 (89%) Query: 1 MNQPTYDESQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDRIQ 60 MNQPTYDE+QIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEA+AG CD I+ Sbjct: 3 MNQPTYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEAMAGICDHIE 62 Query: 61 VKIHEDNSVTVIDNGRGIPVGENVKLKKSTLEVVMTVLHAXXXXXXXXXXXXXXXXXXXI 120 + +HEDNS+TVIDNGRGIPVGEN KLKKSTLEVVMTVLHA + Sbjct: 63 IIVHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGGGYKVSGGLHGVGV 122 Query: 121 SVVNALSEKVVVNVKRDGHIYQQEYRRGAPQYDIKIVXXXXXXXXXXXFLPDPEIFTETT 180 SVVNALS KVVV VKRDGHIYQQEY RG PQYDIK++ FLPDPEIFTETT Sbjct: 123 SVVNALSSKVVVQVKRDGHIYQQEYHRGVPQYDIKVIGDSDDHGTTVTFLPDPEIFTETT 182 Query: 181 VFEYTTLLTRIRELAFLNKGIELSLLDERTGVSNVFKYEGGIVEYVKYLNEKKEALHEEP 240 V++YTTLLTRIRELAFLNKGI L+L DERTG S+ FKYEGGI+EYVK+LNEKKEALHE+P Sbjct: 183 VYDYTTLLTRIRELAFLNKGIALTLTDERTGASDYFKYEGGIIEYVKFLNEKKEALHEDP 242 Query: 241 IYVEGSRDMIAVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKT 300 IYVEGSRD I VEV+LQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKT Sbjct: 243 IYVEGSRDNIQVEVSLQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKT 302 Query: 301 GVIKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGVVESLFGEKLQEF 360 G+IKD++SNL+GDDVREGLTAIISVK+PEPQFEGQTKTKLGNSEVRG+VESLF EKLQEF Sbjct: 303 GLIKDNTSNLSGDDVREGLTAIISVKVPEPQFEGQTKTKLGNSEVRGIVESLFAEKLQEF 362 Query: 361 LEENPAVSRRVLEKSMQXXXXXXXXXXXXXXXXXXSALEVSALPGKLADCSSKDASISEL 420 L+ENPAVSRR+LEK++Q SALEVSALPGKLADCSSKDASISEL Sbjct: 363 LQENPAVSRRILEKALQASRAREAARKAREMTRRKSALEVSALPGKLADCSSKDASISEL 422 Query: 421 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGISD 480 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGI++ Sbjct: 423 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGIAE 482 Query: 481 DFDLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIIEAGYIYIAQPPLFKIERNK 540 DFDLSKARYHK++IMTDADVDGAHIRTLLLTFFYRYMRK++EAGYIYIAQPPLFKIERNK Sbjct: 483 DFDLSKARYHKIIIMTDADVDGAHIRTLLLTFFYRYMRKLVEAGYIYIAQPPLFKIERNK 542 Query: 541 VVRYAQTEKERDEIIASFGENVKVNVQRYKGLGEMNAAQLWDTTMDPESRMMLQVTIEDA 600 V+RYA +E+ERDEII FGENVK+NVQRYKGLGEMNA QLW+TTMDPESR MLQVTIEDA Sbjct: 543 VIRYAGSERERDEIIKEFGENVKINVQRYKGLGEMNAGQLWETTMDPESRTMLQVTIEDA 602 Query: 601 ILADGIFDTLMGDNVEPRREFIQEHAQSVRNLDI 634 ILAD +FDTLMGDNVEPRR+FIQEHA+SVRNLD+ Sbjct: 603 ILADTLFDTLMGDNVEPRRDFIQEHAKSVRNLDV 636 >B1DC00.1 B1DC00_9BACL DNA gyrase subunit B EC=5.99.1.3 Length = 635 Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/632 (78%), Positives = 546/632 (86%) Query: 3 QPTYDESQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDRIQVK 62 Q TYDESQIQVLEGLEAVRKRPGMYIGSTS KGLHHLVWEVVDNSIDEALAGYC +IQV+ Sbjct: 4 QNTYDESQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEVVDNSIDEALAGYCTKIQVR 63 Query: 63 IHEDNSVTVIDNGRGIPVGENVKLKKSTLEVVMTVLHAXXXXXXXXXXXXXXXXXXXISV 122 +HEDNS+TVIDNGRGIPVGEN KLKKSTLEVVMTVLHA +SV Sbjct: 64 VHEDNSITVIDNGRGIPVGENAKLKKSTLEVVMTVLHAGGKFGGEGYKVSGGLHGVGVSV 123 Query: 123 VNALSEKVVVNVKRDGHIYQQEYRRGAPQYDIKIVXXXXXXXXXXXFLPDPEIFTETTVF 182 VNALSE V V VK G++YQQEYRRG PQYD+KI+ F PDPEIFT+TTV+ Sbjct: 124 VNALSEHVTVTVKLHGNVYQQEYRRGVPQYDVKIIGESDETGTTVKFKPDPEIFTDTTVY 183 Query: 183 EYTTLLTRIRELAFLNKGIELSLLDERTGVSNVFKYEGGIVEYVKYLNEKKEALHEEPIY 242 EY TL +RIRELAFLNKG+E+ L+DERTG SN FKY+GGI+E+VK+LN KE +HEEPIY Sbjct: 184 EYETLQSRIRELAFLNKGLEIELIDERTGTSNSFKYDGGIIEFVKHLNRNKEVMHEEPIY 243 Query: 243 VEGSRDMIAVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKTGV 302 VEGS+D I VEV+LQYND YTENI+SFANNINTHEGGTHESGFKSALTRIINDYARKTG+ Sbjct: 244 VEGSKDHIQVEVSLQYNDGYTENIHSFANNINTHEGGTHESGFKSALTRIINDYARKTGL 303 Query: 303 IKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGVVESLFGEKLQEFLE 362 IKD+ SN +GDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRG+VES F EKLQEFL+ Sbjct: 304 IKDNDSNFSGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGIVESFFAEKLQEFLD 363 Query: 363 ENPAVSRRVLEKSMQXXXXXXXXXXXXXXXXXXSALEVSALPGKLADCSSKDASISELYI 422 ENP+VSR+++EK +Q SALEVS+LPGKLADCSSKDASISELYI Sbjct: 364 ENPSVSRKIVEKGLQAARAREAARKARELTRRKSALEVSSLPGKLADCSSKDASISELYI 423 Query: 423 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGISDDF 482 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVE+ARLDRIL NAEIRAIITALGTGI DDF Sbjct: 424 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVERARLDRILGNAEIRAIITALGTGIGDDF 483 Query: 483 DLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIIEAGYIYIAQPPLFKIERNKVV 542 DL+KARYHKV+IMTDADVDGAHIRTL+LTFF+RYMRKIIEAGYIYIAQPPLFKIERNKV+ Sbjct: 484 DLAKARYHKVIIMTDADVDGAHIRTLMLTFFFRYMRKIIEAGYIYIAQPPLFKIERNKVI 543 Query: 543 RYAQTEKERDEIIASFGENVKVNVQRYKGLGEMNAAQLWDTTMDPESRMMLQVTIEDAIL 602 RYAQ+EKER+EIIA FGE KVNVQRYKGLGEMNA QLW+TTMDPESR MLQV+IEDAI Sbjct: 544 RYAQSEKEREEIIAEFGEGAKVNVQRYKGLGEMNATQLWETTMDPESRTMLQVSIEDAIE 603 Query: 603 ADGIFDTLMGDNVEPRREFIQEHAQSVRNLDI 634 AD IFDTLMGDNVEPRR+FIQ+ A+ V+NLDI Sbjct: 604 ADVIFDTLMGDNVEPRRDFIQQFAKDVKNLDI 635 >A8F8Y9.1 A8F8Y9_BACP2 DNA gyrase subunit B EC=5.99.1.3 Length = 642 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/632 (65%), Positives = 494/632 (78%), Gaps = 2/632 (0%) Query: 5 TYDESQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDRIQVKIH 64 +YDE+QIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWE+VDNSIDEALAGYC I V+I Sbjct: 11 SYDENQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEIVDNSIDEALAGYCTDITVQIE 70 Query: 65 EDNSVTVIDNGRGIPVGENVKLKKSTLEVVMTVLHAXXXXXXXXXXXXXXXXXXXISVVN 124 +DNS+TV DNGRGIPVG + K+ + +EV+MTVLHA SVVN Sbjct: 71 KDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASVVN 130 Query: 125 ALSEKVVVNVKRDGHIYQQEYRRGAPQYDIKIVXXXXXXXXXXXFLPDPEIFTETTVFEY 184 ALS + V V RDG I+ Q+++RG P D++I+ F+PDPEIFTET F+Y Sbjct: 131 ALSTTLDVTVYRDGKIHYQQFKRGVPVGDLEIIGETDVTGTTTHFVPDPEIFTETIEFDY 190 Query: 185 TTLLTRIRELAFLNKGIELSLLDERTGVS--NVFKYEGGIVEYVKYLNEKKEALHEEPIY 242 TL R+RELAFL KG+ + + D R G N + YEGGI YV++LN KE +HEEP+Y Sbjct: 191 DTLANRVRELAFLTKGVNIIIEDLREGKERRNEYCYEGGIKSYVEHLNRSKEVVHEEPVY 250 Query: 243 VEGSRDMIAVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKTGV 302 +EG RD I VEVALQYNDSYT NIYSFANNINT+EGGTHE+GFK+ LTR+INDYARK GV Sbjct: 251 IEGERDGITVEVALQYNDSYTSNIYSFANNINTYEGGTHEAGFKTGLTRVINDYARKNGV 310 Query: 303 IKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGVVESLFGEKLQEFLE 362 KD SNL+G+DVREGLTAIIS+K P+PQFEGQTKTKLGNSE R + +SLF E L++FL Sbjct: 311 FKDGDSNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDSLFSEALEKFLL 370 Query: 363 ENPAVSRRVLEKSMQXXXXXXXXXXXXXXXXXXSALEVSALPGKLADCSSKDASISELYI 422 ENP +++++EK + SALEVS+LPGKLADCSSKD SISELYI Sbjct: 371 ENPDAAKKIVEKGVMAARARMAAKKARELTRRKSALEVSSLPGKLADCSSKDPSISELYI 430 Query: 423 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGISDDF 482 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLD+ILSN E+R++ITALGTGI +DF Sbjct: 431 VEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGEDF 490 Query: 483 DLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIIEAGYIYIAQPPLFKIERNKVV 542 +L KARYHKVVIMTDADVDGAHIRTLLLTFFYRYMR+IIE GY+YIAQPPL+K+++ K V Sbjct: 491 NLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMREIIENGYVYIAQPPLYKVQQGKRV 550 Query: 543 RYAQTEKERDEIIASFGENVKVNVQRYKGLGEMNAAQLWDTTMDPESRMMLQVTIEDAIL 602 Y +K+ DE++ S + K +QRYKGLGEMNAAQLW+TTMDP++R +LQVT+EDAI Sbjct: 551 EYVYNDKQLDELLKSLSQTPKPGLQRYKGLGEMNAAQLWETTMDPDARTLLQVTLEDAID 610 Query: 603 ADGIFDTLMGDNVEPRREFIQEHAQSVRNLDI 634 AD F+ LMGD VEPRR FI+E+AQ V+NLDI Sbjct: 611 ADETFEMLMGDKVEPRRNFIEENAQYVKNLDI 642 >Q630A8.1 Q630A8_BACLD DNA gyrase subunit B EC=5.99.1.3 Length = 639 Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/634 (64%), Positives = 497/634 (78%), Gaps = 2/634 (0%) Query: 3 QPTYDESQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDRIQVK 62 Q YDE+QIQVLEGLEAVRKRPGMYIGSTS KGLHHLVWE+VDNSIDEALAGYC I V Sbjct: 6 QNNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVA 65 Query: 63 IHEDNSVTVIDNGRGIPVGENVKLKKSTLEVVMTVLHAXXXXXXXXXXXXXXXXXXXISV 122 I +DNS+TV DNGRGIPVG + K+ + +EV+MTVLHA SV Sbjct: 66 IEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASV 125 Query: 123 VNALSEKVVVNVKRDGHIYQQEYRRGAPQYDIKIVXXXXXXXXXXXFLPDPEIFTETTVF 182 VNALS ++ V V RDG I+ QE+ RG P+ D+K++ F PDPEIFTETT + Sbjct: 126 VNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTEVTGTTTHFKPDPEIFTETTEY 185 Query: 183 EYTTLLTRIRELAFLNKGIELSLLDERTGV--SNVFKYEGGIVEYVKYLNEKKEALHEEP 240 +Y TL TR+RELAFL KG+++++ D+R G N + YEGGI YV++LN +E +HEEP Sbjct: 186 DYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHEEP 245 Query: 241 IYVEGSRDMIAVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKT 300 +Y+EGS+D I VEVALQYNDSYT NIYSFANNI+T+EGGTHE+GFK+ LTR+INDYAR+ Sbjct: 246 VYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRN 305 Query: 301 GVIKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGVVESLFGEKLQEF 360 GV K+S NL+G+DVREGLTAIIS+K P+PQFEGQTKTKLGNSE R + ++LF E L++F Sbjct: 306 GVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALEKF 365 Query: 361 LEENPAVSRRVLEKSMQXXXXXXXXXXXXXXXXXXSALEVSALPGKLADCSSKDASISEL 420 L ENP +++++EK + SALEVS LPGKLADCSSKD +ISEL Sbjct: 366 LLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISEL 425 Query: 421 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGISD 480 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLD+ILSN E+R++ITALGTGI + Sbjct: 426 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGE 485 Query: 481 DFDLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIIEAGYIYIAQPPLFKIERNK 540 DF+L KARYHKVVIMTDADVDGAHIRTLLLTFFYRYMR+IIE GY+YIAQPPL+K+++ K Sbjct: 486 DFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKVQQGK 545 Query: 541 VVRYAQTEKERDEIIASFGENVKVNVQRYKGLGEMNAAQLWDTTMDPESRMMLQVTIEDA 600 V YA +++ +EI+ +N K +QRYKGLGEMNA QLW+TTMDPE+R +LQVT++DA Sbjct: 546 RVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPETRTLLQVTLKDA 605 Query: 601 ILADGIFDTLMGDNVEPRREFIQEHAQSVRNLDI 634 I AD F+ LMGD VEPRR FI+E+A+ V+NLDI Sbjct: 606 IDADETFEMLMGDKVEPRRNFIEENARYVKNLDI 639 >Q65PL7.1 Q65PL7_BACLD DNA gyrase subunit B EC=5.99.1.3 Length = 637 Score = 849 bits (2194), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/634 (64%), Positives = 497/634 (78%), Gaps = 2/634 (0%) Query: 3 QPTYDESQIQVLEGLEAVRKRPGMYIGSTSAKGLHHLVWEVVDNSIDEALAGYCDRIQVK 62 Q YDE+QIQVLEGLEAVRKRPGMYIGSTS KGLHHLVWE+VDNSIDEALAGYC I V Sbjct: 4 QNNYDENQIQVLEGLEAVRKRPGMYIGSTSGKGLHHLVWEIVDNSIDEALAGYCTEINVA 63 Query: 63 IHEDNSVTVIDNGRGIPVGENVKLKKSTLEVVMTVLHAXXXXXXXXXXXXXXXXXXXISV 122 I +DNS+TV DNGRGIPVG + K+ + +EV+MTVLHA SV Sbjct: 64 IEKDNSITVKDNGRGIPVGIHEKMGRPAVEVIMTVLHAGGKFDGSGYKVSGGLHGVGASV 123 Query: 123 VNALSEKVVVNVKRDGHIYQQEYRRGAPQYDIKIVXXXXXXXXXXXFLPDPEIFTETTVF 182 VNALS ++ V V RDG I+ QE+ RG P+ D+K++ F PDPEIFTETT + Sbjct: 124 VNALSTELDVTVYRDGKIHYQEFERGVPKADLKVIGDTEVTGTTTHFKPDPEIFTETTEY 183 Query: 183 EYTTLLTRIRELAFLNKGIELSLLDERTGV--SNVFKYEGGIVEYVKYLNEKKEALHEEP 240 +Y TL TR+RELAFL KG+++++ D+R G N + YEGGI YV++LN +E +HEEP Sbjct: 184 DYDTLATRVRELAFLTKGVKITIEDKREGKERKNEYCYEGGIKSYVEHLNRSREVIHEEP 243 Query: 241 IYVEGSRDMIAVEVALQYNDSYTENIYSFANNINTHEGGTHESGFKSALTRIINDYARKT 300 +Y+EGS+D I VEVALQYNDSYT NIYSFANNI+T+EGGTHE+GFK+ LTR+INDYAR+ Sbjct: 244 VYIEGSKDGITVEVALQYNDSYTSNIYSFANNIHTYEGGTHEAGFKTGLTRVINDYARRN 303 Query: 301 GVIKDSSSNLTGDDVREGLTAIISVKIPEPQFEGQTKTKLGNSEVRGVVESLFGEKLQEF 360 GV K+S NL+G+DVREGLTAIIS+K P+PQFEGQTKTKLGNSE R + ++LF E L++F Sbjct: 304 GVFKESDPNLSGEDVREGLTAIISIKHPDPQFEGQTKTKLGNSEARTITDALFSEALEKF 363 Query: 361 LEENPAVSRRVLEKSMQXXXXXXXXXXXXXXXXXXSALEVSALPGKLADCSSKDASISEL 420 L ENP +++++EK + SALEVS LPGKLADCSSKD +ISEL Sbjct: 364 LLENPDSAKKIVEKGVMAARARMAAKKARELTRRKSALEVSNLPGKLADCSSKDPTISEL 423 Query: 421 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDRILSNAEIRAIITALGTGISD 480 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLD+ILSN E+R++ITALGTGI + Sbjct: 424 YIVEGDSAGGSAKQGRDRHFQAILPLRGKILNVEKARLDKILSNNEVRSMITALGTGIGE 483 Query: 481 DFDLSKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRKIIEAGYIYIAQPPLFKIERNK 540 DF+L KARYHKVVIMTDADVDGAHIRTLLLTFFYRYMR+IIE GY+YIAQPPL+K+++ K Sbjct: 484 DFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIEQGYVYIAQPPLYKVQQGK 543 Query: 541 VVRYAQTEKERDEIIASFGENVKVNVQRYKGLGEMNAAQLWDTTMDPESRMMLQVTIEDA 600 V YA +++ +EI+ +N K +QRYKGLGEMNA QLW+TTMDPE+R +LQVT++DA Sbjct: 544 RVEYAYNDQQLEEILKELPQNPKPGLQRYKGLGEMNATQLWETTMDPETRTLLQVTLKDA 603 Query: 601 ILADGIFDTLMGDNVEPRREFIQEHAQSVRNLDI 634 I AD F+ LMGD VEPRR FI+E+A+ V+NLDI Sbjct: 604 IDADETFEMLMGDKVEPRRNFIEENARYVKNLDI 637 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,257,321,084 Number of extensions: 126277826 Number of successful extensions: 383999 Number of sequences better than 1.0e-05: 9250 Number of HSP's gapped: 352134 Number of HSP's successfully gapped: 10506 Length of query: 634 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 492 Effective length of database: 1,722,912,073 Effective search space: 847672739916 Effective search space used: 847672739916 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)