BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0003.p (295 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8U8.1 B3K8U8_9BACI YheD 262 2e-68 B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein 220 1e-55 B3K957.1 B3K957_9BACI Putative uncharacterized protein 143 2e-32 B1D6A7.1 B1D6A7_9BACL YheD 136 2e-30 B1D4V2.1 B1D4V2_9BACL Putative uncharacterized protein 122 4e-26 >B3K8U8.1 B3K8U8_9BACI YheD Length = 270 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 132/278 (47%), Positives = 179/278 (64%), Gaps = 21/278 (7%) Query: 1 MKIQRVSSKWAKTKVILPNRQLAVYIPETRKYSLEALVELLGIYGTVYIKPDRGTFGSGV 60 M IQRV+SKWAKTK++L N+ LA Y+P TR YSLE L ++L + VYIKPDRGT+G GV Sbjct: 1 MTIQRVASKWAKTKILLKNKGLASYVPATRLYSLETLEDMLNTHTLVYIKPDRGTYGIGV 60 Query: 61 MRAEQRTVHLSPSDRQPGSSDRALTHGIVESEAVVEQKVMYILRYAKDAEAFSSPQELHA 120 M EQ + +D +S Y+LRY E F+S + LH Sbjct: 61 MSVEQLHSQTADTDETTDAS--------------------YMLRYDHKTEVFTSLESLHK 100 Query: 121 ALLLRIKGRTYLIQQGIDLLCHQDRPFDLRVLTQKNLSGAWETTGMLGRVAAPQKVVTNY 180 L +G+ YL+QQGI LL H+DRPFDLRVLTQK+ SG W +TG++GRVAA K++TN+ Sbjct: 101 TLSDLFQGKDYLVQQGIHLLRHKDRPFDLRVLTQKSPSGQWVSTGIIGRVAAKNKIITNH 160 Query: 181 HSGGSIYTVRNLLKTHMIPDEMNATIQKLKLMGVKIAAQLETAYPGLKEIGLDVAIDSHH 240 HSGG ++ + L+ HM +E ++L +GV +A+QL+ YP LKEIGLDVAID Sbjct: 161 HSGGVVHHYKPLMLEHMTAEEAGNIRRELNTLGVNVASQLQKTYPNLKEIGLDVAIDDRW 220 Query: 241 DLWLLEVNTLPSIIVFSS-FQNKSNYRKIRSYARAYGR 277 ++W+LEVNT P++ F F++ S Y+++ YA AYGR Sbjct: 221 NIWILEVNTKPALFPFKKFFKDPSIYKQVEKYANAYGR 258 >B1DBZ9.1 B1DBZ9_9BACL Putative uncharacterized protein Length = 253 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 118/280 (42%), Positives = 160/280 (57%), Gaps = 28/280 (10%) Query: 1 MKIQRVSSKWAKTKVILPNRQLAVYIPETRKYSLEALVELLGIYGTVYIKPDRGTFGSGV 60 M IQ V SKW KT V+L + L YIP TR ++ E L +L YG VY+KP GTFG GV Sbjct: 1 MSIQLVYSKWEKTNVLLHSPALREYIPSTRLFNKENLQLMLAEYGMVYVKPVNGTFGKGV 60 Query: 61 MRAEQRTVHLSPSDRQPGSSDRALTHGIVESEAVVEQKVMYILRYAKDAEAFSSPQELHA 120 MR E+ Q ++ R F + + LH Sbjct: 61 MRVERLKQAAKGYKYQLNTTIRT----------------------------FPTLELLHQ 92 Query: 121 ALLLRIKGRTYLIQQGIDLLCHQDRPFDLRVLTQKNLSGAWETTGMLGRVAAPQKVVTNY 180 +L RI GR YL+Q+GIDLL H++R FD+RV+ Q+N + WE TG++GR+A P KVVTNY Sbjct: 93 SLAKRINGRRYLVQRGIDLLRHKNRRFDIRVMVQRNENNHWEATGIIGRLAHPAKVVTNY 152 Query: 181 HSGGSIYTVRNLLKTHMIPDEMNATIQKLKLMGVKIAAQLETAYPGLKEIGLDVAIDSHH 240 H+GG+ + LL +H P + +LK + + IA +LE YPG+KE+G+D+AID Sbjct: 153 HNGGTPMSFERLLSSHQSPTQKMIYAMRLKQISLDIAKELEKHYPGIKELGIDIAIDQQQ 212 Query: 241 DLWLLEVNTLPSIIVFSSFQNKSNYRKIRSYARAYGRLKK 280 W+LEVNT P +F ++KS +RKI YA +YGR KK Sbjct: 213 RPWILEVNTKPDAFIFRKLEDKSMFRKIYQYAVSYGRYKK 252 >B3K957.1 B3K957_9BACI Putative uncharacterized protein Length = 263 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 38/282 (13%) Query: 2 KIQRVSSKWAKTKVILPNRQLAVYIPETRKYSLEALVELLGIYGTVYIKPDRGTFGSGVM 61 K + SKW KTK + + Y+P T +S + L +L Y TV+ KP G+ G+ ++ Sbjct: 16 KSSTIKSKWKKTKWLNEDAYFRQYVPHTLPFSKKNLNAMLADYTTVFFKPTDGSGGNNII 75 Query: 62 RAEQRTVHLSPSDRQPGSSDRALTHGIVESEAVVEQKVMYILRYAKDAEAFSSPQELHAA 121 R R+ G ++ + S + Q + R+A Sbjct: 76 RI-----------RKTGGGYQSQLNTTKTSYSSSSQLYRDLNRFAGS------------- 111 Query: 122 LLLRIKGRTYLIQQGIDLLCHQDRPFDLRVLTQKNLSGAWETTGMLGRVAAPQKVVTNYH 181 R YL+Q+GI L +PFD+RV+ QK GAW T + +V P KV TNY+ Sbjct: 112 -------RPYLLQKGIRLAKSNGKPFDIRVMVQKTREGAWVGTALFTKVGNPNKVATNYN 164 Query: 182 SGGSIYTVRNLLKTHMIPDEMNATIQK----LKLMGVKIAAQLETAYPGLKEIGLDVAID 237 GGSI T + KT + +A IQ+ LK +GV + + Y G KE+GLDVA+D Sbjct: 165 QGGSIGTFK---KTMSGANFDSAFIQQLESELKGLGVAVGKNFDRHYKGFKELGLDVAVD 221 Query: 238 SHHDLWLLEVNTLPSIIVFSSFQNKSNYRKIRSYARAYGRLK 279 S W+LEVNT P I + +++S Y ++ SY + YGR K Sbjct: 222 SKGRPWILEVNTRPQIYPLKNLKDRSLYHRVLSYGKHYGRTK 263 >B1D6A7.1 B1D6A7_9BACL YheD Length = 249 Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 129/261 (49%), Gaps = 31/261 (11%) Query: 8 SKWAKTKVILPNRQLAVYIPETRKYSLEALVELLGIYGTVYIKPDRGTFGSGVMRAEQRT 67 +KWAKT V+ + ++P T +S +L +L +Y VY+KP+RG+ G GVMR E R Sbjct: 9 NKWAKTIVLNQKASIRSHVPHTLLFSESSLKSMLRLYQMVYVKPNRGSHGVGVMRVEYRN 68 Query: 68 VHLSPSDRQPGSSDRALTHGIVESEAVVEQKVMYILRYAKDAEAFSSPQELHAALLLRIK 127 Q G+ R L +A +L A+L +I+ Sbjct: 69 ---GTYSYQLGAKRRR------------------NLTWA----------QLVASLTYKIQ 97 Query: 128 GRTYLIQQGIDLLCHQDRPFDLRVLTQKNLSGAWETTGMLGRVAAPQKVVTNYHSGGSIY 187 G Y+IQ+GI L ++R +DLRV Q N G W+ TGML RVA VTN G IY Sbjct: 98 GAKYIIQRGIHLSRFKNRIYDLRVELQLNEYGRWQITGMLARVAQQGMAVTNGAQGAEIY 157 Query: 188 TVRNLLKTHMIPDEMNATIQKLKLMGVKIAAQLETAYPGLKEIGLDVAIDSHHDLWLLEV 247 T +++ +H + + +L + ++ A L+ YP L E+G D+A+D W+LEV Sbjct: 158 TFSSVIASHGGAELVRRVTSQLNSLCIESAHMLKAKYPFLNELGFDIALDQQLHPWILEV 217 Query: 248 NTLPSIIVFSSFQNKSNYRKI 268 NT P I F ++ Y +I Sbjct: 218 NTTPEAIPFKKLPTRTMYNRI 238 >B1D4V2.1 B1D4V2_9BACL Putative uncharacterized protein Length = 249 Score = 122 bits (306), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 75/268 (27%), Positives = 123/268 (45%), Gaps = 33/268 (12%) Query: 3 IQRVSSKWAKTKVILPNRQLAVYIPETRKYSLEALVELLGIYGTVYIKPDRGTFGSGVMR 62 I+ KW K + +L Y+P+T +++ + + ++ Y +++KPD G G GVM+ Sbjct: 6 IKYPGRKWLKHVALSGEEELRDYLPDTEQFTPKGFISMIDRYPVLFVKPDLGMKGQGVMK 65 Query: 63 AEQRTVHLSPSDRQPGSSDRALTHGIVESEAVVEQKVMYILRYAKDAEAFSSPQELHAAL 122 + + ++R +F S + L Sbjct: 66 VYYKDGRI-------------------------------VIRTEDSRYSFQSAKFAAIKL 94 Query: 123 LLRIKGRTYLIQQGIDLLCHQDRPFDLRVLTQKNLSGAWETTGMLGRVAAPQKVVTNYHS 182 I + YL+QQGIDL+ P D R+L W+ G++G+VAAP + VTN+ S Sbjct: 95 KQLIGTKRYLMQQGIDLIQIDGNPIDFRILLHLRRDETWKFFGVMGKVAAPNRFVTNHSS 154 Query: 183 GGSIYTVRNLLKTHMIPDEMNATIQKLKLMGVKIAAQLETAYPGLKEIGLDVAIDSHHDL 242 GG + L + E +KL+ M K+A+ ++ +P + E+GLD+AID+ H + Sbjct: 155 GGKAIRLHQALG--LTRQECEPWEKKLREMAFKVASGMKKHFPLITELGLDIAIDTEHRV 212 Query: 243 WLLEVNTLPSIIVFSSFQNKSNYRKIRS 270 WLLE NT P +F N Y +I S Sbjct: 213 WLLEANTKPQFQLFRYHSNPKLYAQIAS 240 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,662,251,826 Number of extensions: 65880725 Number of successful extensions: 146300 Number of sequences better than 1.0e-05: 195 Number of HSP's gapped: 146036 Number of HSP's successfully gapped: 198 Length of query: 295 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 161 Effective length of database: 1,798,280,193 Effective search space: 289523111073 Effective search space used: 289523111073 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)