BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0002.p (848 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8U9.1 B3K8U9_9BACI DNA gyrase, A subunit EC=5.99.1.3 1464 0.0 B1DBZ8.1 B1DBZ8_9BACL DNA gyrase, A subunit EC=5.99.1.3 1310 0.0 C0ZH47.1 C0ZH47_BREBN DNA gyrase subunit A EC=5.99.1.3 1165 0.0 O50628.1 GYRA_BACHD DNA gyrase subunit A EC=5.99.1.3 1164 0.0 B4BPL3.1 B4BPL3_9BACI DNA gyrase, A subunit EC=5.99.1.3 1146 0.0 >B3K8U9.1 B3K8U9_9BACI DNA gyrase, A subunit EC=5.99.1.3 Length = 834 Score = 1464 bits (3791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 706/807 (87%), Positives = 768/807 (95%) Query: 1 MAEQNNPQVKDRDIGEEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMFA 60 MAE+N Q+KDRDIG EMRESFMDYAMSIIVSRALPDVRDG+KPVHRRIL+AMSELGM Sbjct: 1 MAEENFSQIKDRDIGTEMRESFMDYAMSIIVSRALPDVRDGMKPVHRRILYAMSELGMAP 60 Query: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 DKPHKKSARIVGEVIGKYHPHGDSAVYE+MVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA Sbjct: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 Query: 121 MRYTEARLSKIAGEMLRDLNKETVDFAPNYDGEENEPVVLPARYPNLLVNGVSGIAVGMA 180 MRYTEARLSKIA EMLRD+NKET+DFAPNYDGEE EPVVLPARYPNLLVNGVSGIAVGMA Sbjct: 121 MRYTEARLSKIAMEMLRDINKETIDFAPNYDGEEQEPVVLPARYPNLLVNGVSGIAVGMA 180 Query: 181 TNIPPHNLGEVIDGVQAMIKNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGS 240 TNIPPHNLGEVIDGVQAMI+NPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGS Sbjct: 181 TNIPPHNLGEVIDGVQAMIRNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGS 240 Query: 241 VTMRAKADIEENNGKARIIVSELPYQVNKARLVEKIAELVREKRIEGITDLRDESDRNGM 300 VTMRAKA IEENN KARI+V E+PYQVNKARLVEKIAELVREKRI+GITDLRDESDRNGM Sbjct: 241 VTMRAKATIEENNNKARIVVHEIPYQVNKARLVEKIAELVREKRIDGITDLRDESDRNGM 300 Query: 301 RVVVEMRRDVNPNVVLNNLYKHTSMQSTFGINMLAIVNNEPKILNLRDVLYHYLQHQIEV 360 R+V+E+RRDVNPNVVLNNLYKHT+MQS FGINMLAIVNNEPKILNLRDVL+HYL+HQ+ V Sbjct: 301 RIVIELRRDVNPNVVLNNLYKHTAMQSNFGINMLAIVNNEPKILNLRDVLFHYLEHQVTV 360 Query: 361 IRRRTIFDLKKAEARAHILEGLRIALDHLDEVIALIRASRTTDIARDGLMSTFSLSVEQA 420 IRRRT F+LKKAEARAHILEGLR+ALDHLDEVIALIRAS+TT+ AR+GLM F LS EQA Sbjct: 361 IRRRTEFELKKAEARAHILEGLRVALDHLDEVIALIRASQTTEAAREGLMERFGLSHEQA 420 Query: 421 QAILDMRMQRLTGLEREKIENEYNELLAKIAEYREILANEHLVLEIISNELQEIRDRYSD 480 QAILDMR+QRLTGLEREKIENEY ELLA+IAE REILANEHLVL+II++ELQEI++R++D Sbjct: 421 QAILDMRLQRLTGLEREKIENEYQELLARIAELREILANEHLVLQIINDELQEIKERFAD 480 Query: 481 DRRTEITIGEESILDEDLIPREEVVITITHTGYIKRLPVSTYRSQKRGGRGVMGMDTKDQ 540 +RRTEIT+GE+SILDEDLIPREEV+ITITHTGYIKRLP +TYRSQKRGGRGV+GMDTK + Sbjct: 481 ERRTEITVGEDSILDEDLIPREEVIITITHTGYIKRLPANTYRSQKRGGRGVVGMDTKSE 540 Query: 541 DFVEHLFVSNSHNYLMFFTDKGKVYRIKAYEIPELGRTARGTPIINLIQIEQGEKISAVI 600 DFVEHLFV+NSH+YLMFFTDKGK YR+KAYEIPEL RTARGTPIINLIQIEQGE I+AVI Sbjct: 541 DFVEHLFVTNSHHYLMFFTDKGKAYRLKAYEIPELSRTARGTPIINLIQIEQGESINAVI 600 Query: 601 QVEDADSDKYLFFATREGIVKKTPLEDYNNIRKGGLIAINLREEDSLIEVKLTDGEQNLI 660 VE+ DSD YLFFATR+G+VKKTPLEDY NIRKGGLIAINLRE+DSLIEVKLTDG+Q +I Sbjct: 601 PVENFDSDNYLFFATRQGVVKKTPLEDYVNIRKGGLIAINLREDDSLIEVKLTDGQQEII 660 Query: 661 IGTARGMSITFSENDVRSMGRSATGVKGITLDDNDHVIGMDCVDKELEVLIVTSKGYGKR 720 +GTA+GMSI F E+DVRSMGRSATGVKGITLDDND VIGMD VD+EL++LIVT+KGYGKR Sbjct: 661 MGTAQGMSIRFKESDVRSMGRSATGVKGITLDDNDEVIGMDVVDQELDILIVTTKGYGKR 720 Query: 721 TPALDYRSQTRGGKGIKTINLTDKNGPVVGLKVVKKDEDLMIITTSGTLIRTSMDGISTM 780 TPA DYRSQTRGGKGIKTIN+T+KNGPVV LKVVK +EDLMIIT SGT+IRTSM+GISTM Sbjct: 721 TPASDYRSQTRGGKGIKTINITEKNGPVVALKVVKSEEDLMIITASGTIIRTSMEGISTM 780 Query: 781 GRYAQGVKLINIREDDAVATLCRADKS 807 GRYAQGVKLINIREDDAV T+CRADKS Sbjct: 781 GRYAQGVKLINIREDDAVGTVCRADKS 807 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 4/117 (3%) Query: 491 ESILDEDLIPREEVVITITHTGYIKRLPVSTYRSQKRGGRGVMGMD-TKDQDFVEHLFVS 549 + ++ D++ +E ++ +T GY KR P S YRSQ RGG+G+ ++ T+ V L V Sbjct: 695 DEVIGMDVVDQELDILIVTTKGYGKRTPASDYRSQTRGGKGIKTINITEKNGPVVALKVV 754 Query: 550 NSHNYLMFFTDKGKVYRIKAYEIPELGRTARGTPIINLIQIEQGEKISAVIQVEDAD 606 S LM T G + R I +GR A+G + LI I + + + V + + +D Sbjct: 755 KSEEDLMIITASGTIIRTSMEGISTMGRYAQG---VKLINIREDDAVGTVCRADKSD 808 >B1DBZ8.1 B1DBZ8_9BACL DNA gyrase, A subunit EC=5.99.1.3 Length = 835 Score = 1310 bits (3389), Expect = 0.0, Method: Compositional matrix adjust. Identities = 642/805 (79%), Positives = 729/805 (90%) Query: 3 EQNNPQVKDRDIGEEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMFADK 62 EQ + Q+KDRDIG EMR+SFMDYAMSIIVSRALPDVRDGLKPVHRRIL+AMSELGM +DK Sbjct: 4 EQQHSQIKDRDIGTEMRDSFMDYAMSIIVSRALPDVRDGLKPVHRRILYAMSELGMSSDK 63 Query: 63 PHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 122 P+KKSARIVGEVIGKYHPHGDS+VYE MVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR Sbjct: 64 PYKKSARIVGEVIGKYHPHGDSSVYEAMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAAMR 123 Query: 123 YTEARLSKIAGEMLRDLNKETVDFAPNYDGEENEPVVLPARYPNLLVNGVSGIAVGMATN 182 YTEARLSKIA EMLRDLNKETVDF PNYDGEE EP VLP+R+PNLLVNGV+GIAVGMATN Sbjct: 124 YTEARLSKIAMEMLRDLNKETVDFVPNYDGEEKEPAVLPSRFPNLLVNGVTGIAVGMATN 183 Query: 183 IPPHNLGEVIDGVQAMIKNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGSVT 242 IPPHNL EVIDG+QA+I+NP+ITP+EL++Y++GPDFPTAG ++G GIRQAY TGRG+VT Sbjct: 184 IPPHNLTEVIDGIQALIRNPEITPVELIDYVKGPDFPTAGIVMGLSGIRQAYLTGRGTVT 243 Query: 243 MRAKADIEENNGKARIIVSELPYQVNKARLVEKIAELVREKRIEGITDLRDESDRNGMRV 302 MRA+A IEEN KARIIV ELPYQVNKARLVEKIAELVREK+IEGITDLRDESDRNGMRV Sbjct: 244 MRARATIEENGNKARIIVYELPYQVNKARLVEKIAELVREKKIEGITDLRDESDRNGMRV 303 Query: 303 VVEMRRDVNPNVVLNNLYKHTSMQSTFGINMLAIVNNEPKILNLRDVLYHYLQHQIEVIR 362 V+E+RRDV P+VVLNNLYK T MQS FGINMLA+VN EPK LN+R++LY+YLQHQIEVIR Sbjct: 304 VIELRRDVTPSVVLNNLYKQTQMQSNFGINMLALVNGEPKTLNIREMLYYYLQHQIEVIR 363 Query: 363 RRTIFDLKKAEARAHILEGLRIALDHLDEVIALIRASRTTDIARDGLMSTFSLSVEQAQA 422 RRT +DLKKAEARAHILEGLRIALDHLDEVIALIRAS+T DIAR+GL+ F+LS EQAQA Sbjct: 364 RRTEYDLKKAEARAHILEGLRIALDHLDEVIALIRASQTADIAREGLIERFALSYEQAQA 423 Query: 423 ILDMRMQRLTGLEREKIENEYNELLAKIAEYREILANEHLVLEIISNELQEIRDRYSDDR 482 ILDMR+QRLTGLER+KIE EY EL+ KIAEY+ ILA+E LVL IIS+EL EI++R+ D+R Sbjct: 424 ILDMRLQRLTGLERDKIEAEYAELMKKIAEYKAILADEQLVLNIISDELNEIKERFGDER 483 Query: 483 RTEITIGEESILDEDLIPREEVVITITHTGYIKRLPVSTYRSQKRGGRGVMGMDTKDQDF 542 RTEIT+ +E ILDEDLIPRE+V+I+ITHTGYIKRLPV+TYRSQKRGG+GV+GMDTK+ DF Sbjct: 484 RTEITVSDEEILDEDLIPREDVIISITHTGYIKRLPVTTYRSQKRGGKGVVGMDTKEHDF 543 Query: 543 VEHLFVSNSHNYLMFFTDKGKVYRIKAYEIPELGRTARGTPIINLIQIEQGEKISAVIQV 602 VEHLFVSN+H+YL+FFT+KGKVYR+KAYEIP+L RTARGTPIINLIQIEQGE I+AVI V Sbjct: 544 VEHLFVSNTHHYLLFFTNKGKVYRLKAYEIPDLSRTARGTPIINLIQIEQGETINAVIPV 603 Query: 603 EDADSDKYLFFATREGIVKKTPLEDYNNIRKGGLIAINLREEDSLIEVKLTDGEQNLIIG 662 E DS+ YLFFATR+GIVKKTPL+DY NIRK GLIAI++RE+D LI VKLTDG Q +++G Sbjct: 604 ESFDSESYLFFATRQGIVKKTPLDDYMNIRKVGLIAISIREDDELIGVKLTDGNQEIVMG 663 Query: 663 TARGMSITFSENDVRSMGRSATGVKGITLDDNDHVIGMDCVDKELEVLIVTSKGYGKRTP 722 TA+GMSI FSE DVRSMGRSATGVKGI LDD+D VI MD V+ E +VLIVT+KGYGKRTP Sbjct: 664 TAQGMSIRFSEQDVRSMGRSATGVKGIQLDDDDTVIDMDVVNPENDVLIVTAKGYGKRTP 723 Query: 723 ALDYRSQTRGGKGIKTINLTDKNGPVVGLKVVKKDEDLMIITTSGTLIRTSMDGISTMGR 782 +YR Q RGGKGIKT+N+TDKNGP+V LKVV DEDLMI+T GTLIRTSM+GISTMGR Sbjct: 724 MSEYRIQNRGGKGIKTLNVTDKNGPIVSLKVVLNDEDLMIMTALGTLIRTSMEGISTMGR 783 Query: 783 YAQGVKLINIREDDAVATLCRADKS 807 QGVKLIN R+DD V+T+ R +S Sbjct: 784 NTQGVKLINTRDDDTVSTVTRVARS 808 >C0ZH47.1 C0ZH47_BREBN DNA gyrase subunit A EC=5.99.1.3 Length = 844 Score = 1165 bits (3015), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/807 (71%), Positives = 690/807 (85%), Gaps = 6/807 (0%) Query: 1 MAEQNN--PQVKDRDIGEEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGM 58 MAE+ P+V DI EMRESF+ YAMS+IVSRALPDVRDGLKPVHRRIL+AM ++G+ Sbjct: 1 MAEETARFPKV---DISHEMRESFISYAMSVIVSRALPDVRDGLKPVHRRILYAMHDMGL 57 Query: 59 FADKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVDGHGNFGSIDGDMA 118 DKP +KSA +VGEV+ YHPHGDS++YE MVRMAQDF+MRYMLV+G GNFGS+DGD A Sbjct: 58 TPDKPFRKSANVVGEVMANYHPHGDSSIYEAMVRMAQDFNMRYMLVEGQGNFGSVDGDPA 117 Query: 119 AAMRYTEARLSKIAGEMLRDLNKETVDFAPNYDGEENEPVVLPARYPNLLVNGVSGIAVG 178 AAMRYTE+R SK+A E+LRD++KETVDF PNYDG + EPVVLP+R+PNLL+NG SGIAVG Sbjct: 118 AAMRYTESRFSKLALELLRDIDKETVDFIPNYDGRKEEPVVLPSRFPNLLLNGASGIAVG 177 Query: 179 MATNIPPHNLGEVIDGVQAMIKNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGR 238 MATNIPPHNL EV+DGV AMI NPDIT +LM+ I+GPDFPTAG ILG GIR+AY TGR Sbjct: 178 MATNIPPHNLTEVVDGVIAMIDNPDITIQDLMKIIKGPDFPTAGEILGYSGIRRAYETGR 237 Query: 239 GSVTMRAKADIEEN-NGKARIIVSELPYQVNKARLVEKIAELVREKRIEGITDLRDESDR 297 GS+ MRAK IEE+ GK RIIV+E+PYQVNKARLVEKIAELVREK+IEGITDLRDESDR Sbjct: 238 GSIIMRAKTQIEEDGKGKPRIIVTEIPYQVNKARLVEKIAELVREKKIEGITDLRDESDR 297 Query: 298 NGMRVVVEMRRDVNPNVVLNNLYKHTSMQSTFGINMLAIVNNEPKILNLRDVLYHYLQHQ 357 GMR+V+E+RRDV P VVLNNL+KHT MQSTFG+NMLA+V++ P++LNLRD+LY+YL+HQ Sbjct: 298 KGMRIVMELRRDVIPKVVLNNLFKHTQMQSTFGVNMLALVDSRPRVLNLRDMLYYYLEHQ 357 Query: 358 IEVIRRRTIFDLKKAEARAHILEGLRIALDHLDEVIALIRASRTTDIARDGLMSTFSLSV 417 +IRRRT +DLK+AEARAHILEGLRIALDH+DE+I+LIR+S+TT+ AR GLM +SLS Sbjct: 358 RVIIRRRTEYDLKQAEARAHILEGLRIALDHIDEIISLIRSSQTTEEARTGLMENYSLSY 417 Query: 418 EQAQAILDMRMQRLTGLEREKIENEYNELLAKIAEYREILANEHLVLEIISNELQEIRDR 477 EQAQAILDMR+QRLTGLEREKIENEY EL+ KIAE R ILA+E + II +EL EI+++ Sbjct: 418 EQAQAILDMRLQRLTGLEREKIENEYQELMVKIAELRAILADEAKIYAIIRDELGEIKEK 477 Query: 478 YSDDRRTEITIGEESILDEDLIPREEVVITITHTGYIKRLPVSTYRSQKRGGRGVMGMDT 537 + D+RRTEIT E I D DLIP E+VVIT+TH GYIKRLPVSTYRSQKRGGRGV G+ T Sbjct: 478 FGDERRTEITFDENHIEDADLIPEEDVVITLTHDGYIKRLPVSTYRSQKRGGRGVQGLGT 537 Query: 538 KDQDFVEHLFVSNSHNYLMFFTDKGKVYRIKAYEIPELGRTARGTPIINLIQIEQGEKIS 597 KD DFVEHL+++NSH+Y+MFFT KGKVYR+K +EIP+L RTA+GTPIINLIQIE+GE++S Sbjct: 538 KDDDFVEHLYITNSHDYIMFFTSKGKVYRLKGFEIPDLSRTAKGTPIINLIQIEKGERVS 597 Query: 598 AVIQVEDADSDKYLFFATREGIVKKTPLEDYNNIRKGGLIAINLREEDSLIEVKLTDGEQ 657 AVI V++ D + YLFFAT++GI+KKT LE Y NIRKGGLIA+NLRE+D LI V+LTDG+Q Sbjct: 598 AVIPVKEFDQEHYLFFATKKGIIKKTTLESYENIRKGGLIAVNLREDDELIGVRLTDGQQ 657 Query: 658 NLIIGTARGMSITFSENDVRSMGRSATGVKGITLDDNDHVIGMDCVDKELEVLIVTSKGY 717 +I+GT +GMS+ F+E DVR+MGR+ATGVKGITLDD+D VI MD + EVLIVT+ GY Sbjct: 658 QIIMGTHKGMSVRFNEGDVRTMGRNATGVKGITLDDDDDVIDMDVIKPNAEVLIVTANGY 717 Query: 718 GKRTPALDYRSQTRGGKGIKTINLTDKNGPVVGLKVVKKDEDLMIITTSGTLIRTSMDGI 777 GKRTP +YR Q+RGGKGIKT N+TD++GPVVGLKVV+ +EDLMIITTSG +IRT M GI Sbjct: 718 GKRTPVDEYRIQSRGGKGIKTHNVTDRSGPVVGLKVVEPEEDLMIITTSGIIIRTEMKGI 777 Query: 778 STMGRYAQGVKLINIREDDAVATLCRA 804 S MGRY QGVKLI + E++ V ++ + Sbjct: 778 SVMGRYTQGVKLIRLSENEQVGSVAKC 804 >O50628.1 GYRA_BACHD DNA gyrase subunit A EC=5.99.1.3 Length = 833 Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/803 (69%), Positives = 678/803 (84%) Query: 1 MAEQNNPQVKDRDIGEEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMFA 60 MAEQ+ +VK+ +I +EM+ SFMDYAMS+IVSRALPDVRDG+KPVHRRIL+AM+ELGM + Sbjct: 1 MAEQDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTS 60 Query: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 DK +KKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFS RYMLVDGHGNFGSIDGD AAA Sbjct: 61 DKAYKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAA 120 Query: 121 MRYTEARLSKIAGEMLRDLNKETVDFAPNYDGEENEPVVLPARYPNLLVNGVSGIAVGMA 180 MRYTEAR+SKI+ E++RD+NK+T+D+ NYDG E EPVV+P+R+PNLLVNG SGIAVGMA Sbjct: 121 MRYTEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMA 180 Query: 181 TNIPPHNLGEVIDGVQAMIKNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGS 240 TNIPPH LGEVIDGV A+ KNPDI+ ELME+I GPDFPT ILGR GIR+AY+TGRGS Sbjct: 181 TNIPPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGS 240 Query: 241 VTMRAKADIEENNGKARIIVSELPYQVNKARLVEKIAELVREKRIEGITDLRDESDRNGM 300 +T+RAK +IEE++GK RIIV E+PYQVNKA+L+EKIAELVR+K+I+GITDLRDESDRNGM Sbjct: 241 ITLRAKTEIEEHHGKQRIIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGM 300 Query: 301 RVVVEMRRDVNPNVVLNNLYKHTSMQSTFGINMLAIVNNEPKILNLRDVLYHYLQHQIEV 360 R+V+E+R+D N NV+LNNLYK T++Q++FGIN+LA+V +PK+LNL++ L HYL HQ+ V Sbjct: 301 RIVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIV 360 Query: 361 IRRRTIFDLKKAEARAHILEGLRIALDHLDEVIALIRASRTTDIARDGLMSTFSLSVEQA 420 IRRRT F+L+KAEARAHILEGLRIALDHLDEVI+LIR+S+TT+IAR+GLM F LS EQA Sbjct: 361 IRRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMERFELSYEQA 420 Query: 421 QAILDMRMQRLTGLEREKIENEYNELLAKIAEYREILANEHLVLEIISNELQEIRDRYSD 480 QAILDMR+QRLTGLER+KIE EY EL+ +IAE + ILA+ VL+II EL E++++Y+D Sbjct: 421 QAILDMRLQRLTGLERDKIEAEYKELIERIAELKAILADHEKVLDIIREELLELKEKYND 480 Query: 481 DRRTEITIGEESILDEDLIPREEVVITITHTGYIKRLPVSTYRSQKRGGRGVMGMDTKDQ 540 +R+T I+ E+ DEDLIPR+ VVIT+TH GYIKRLP+STYRSQKRGGRG+ GM T + Sbjct: 481 ERKTAISASEDMFEDEDLIPRQNVVITLTHHGYIKRLPISTYRSQKRGGRGIQGMGTNED 540 Query: 541 DFVEHLFVSNSHNYLMFFTDKGKVYRIKAYEIPELGRTARGTPIINLIQIEQGEKISAVI 600 DFV+HLF +NSH+ ++FFT+KGKVYR+K YEIPELGRTA+G PIINL+QIEQ E IS +I Sbjct: 541 DFVQHLFTTNSHHTILFFTNKGKVYRLKGYEIPELGRTAKGIPIINLLQIEQDEYISTII 600 Query: 601 QVEDADSDKYLFFATREGIVKKTPLEDYNNIRKGGLIAINLREEDSLIEVKLTDGEQNLI 660 +E+ D YLFF T++GI K+T L + NIR+GGL AINLRE D L V+LT+G++ +I Sbjct: 601 PIEEFTEDHYLFFMTKDGIAKRTQLSSFANIRRGGLFAINLREGDELHGVRLTNGDKEVI 660 Query: 661 IGTARGMSITFSENDVRSMGRSATGVKGITLDDNDHVIGMDCVDKELEVLIVTSKGYGKR 720 +GT +GM+I F E DVR MGR+ATGVKGI+L +DHV+GMD V+ +VLIVT KG+GKR Sbjct: 661 VGTRQGMAIRFHETDVRLMGRTATGVKGISLTGDDHVVGMDIVEDGQDVLIVTEKGFGKR 720 Query: 721 TPALDYRSQTRGGKGIKTINLTDKNGPVVGLKVVKKDEDLMIITTSGTLIRTSMDGISTM 780 TP DYR QTRGGKGIKT N+T+KNGP+V LKVV D DLMIIT SG +IR + IS Sbjct: 721 TPIADYRIQTRGGKGIKTCNITEKNGPLVSLKVVSVDHDLMIITASGIIIRLHVKDISVT 780 Query: 781 GRYAQGVKLINIREDDAVATLCR 803 GR QGV LI + E + VAT+ R Sbjct: 781 GRITQGVTLIRVAEGEEVATVAR 803 >B4BPL3.1 B4BPL3_9BACI DNA gyrase, A subunit EC=5.99.1.3 Length = 822 Score = 1146 bits (2965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 550/808 (68%), Positives = 680/808 (84%), Gaps = 5/808 (0%) Query: 1 MAEQNNPQVKDRDIGEEMRESFMDYAMSIIVSRALPDVRDGLKPVHRRILFAMSELGMFA 60 MAE P++++ +I +EMR SF+DYAMS+IVSRALPDVRDGLKPVHRRIL+AM +LGM A Sbjct: 1 MAEHEQPRIREVNISQEMRSSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMHDLGMTA 60 Query: 61 DKPHKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSMRYMLVDGHGNFGSIDGDMAAA 120 DKP+KKSARIVGEVIGKYHPHGD+AVY+TMVRMAQDF+ RYMLVDGHGNFGSIDGD AAA Sbjct: 61 DKPYKKSARIVGEVIGKYHPHGDAAVYDTMVRMAQDFNYRYMLVDGHGNFGSIDGDAAAA 120 Query: 121 MRYTEARLSKIAGEMLRDLNKETVDFAPNYDGEENEPVVLPARYPNLLVNGVSGIAVGMA 180 MRYTEAR+SKIA E+LRD+NK+T+D+ NYDG E EPVVLP+R+PNLLVNG SGIAVGMA Sbjct: 121 MRYTEARMSKIAMELLRDINKDTIDYQDNYDGSEKEPVVLPSRFPNLLVNGSSGIAVGMA 180 Query: 181 TNIPPHNLGEVIDGVQAMIKNPDITPMELMEYIQGPDFPTAGYILGREGIRQAYRTGRGS 240 TNIPPH LGEVID + A+ +NP++T +LMEYI GPDFPTAG I+GR GIR+AY TGRGS Sbjct: 181 TNIPPHQLGEVIDALLALSQNPEMTVADLMEYIPGPDFPTAGQIIGRSGIRKAYETGRGS 240 Query: 241 VTMRAKADIEEN-NGKARIIVSELPYQVNKARLVEKIAELVREKRIEGITDLRDESDRNG 299 +T+RAKA+IE++ NGKA IIVSELPYQVNKA+L+E+IAELVRE++I+GITDLRDESDRNG Sbjct: 241 ITLRAKAEIEQHANGKATIIVSELPYQVNKAKLIERIAELVRERKIDGITDLRDESDRNG 300 Query: 300 MRVVVEMRRDVNPNVVLNNLYKHTSMQSTFGINMLAIVNNEPKILNLRDVLYHYLQHQIE 359 MR+V+E+RRD N VVLNNLYK+T++Q++FGINMLA+VN EPK+LNL++ L HYL HQ Sbjct: 301 MRIVIEVRRDANAKVVLNNLYKYTALQTSFGINMLALVNGEPKVLNLKECLEHYLNHQKT 360 Query: 360 VIRRRTIFDLKKAEARAHILEGLRIALDHLDEVIALIRASRTTDIARDGLMSTFSLSVEQ 419 VIRRRT F+LKKAEARAHILEGLRIALDHLDEVI LIR S+TT+ AR+GLM FSLS Q Sbjct: 361 VIRRRTAFELKKAEARAHILEGLRIALDHLDEVIDLIRRSQTTEAAREGLMERFSLSERQ 420 Query: 420 AQAILDMRMQRLTGLEREKIENEYNELLAKIAEYREILANEHLVLEIISNELQEIRDRYS 479 AQAILDMR+QRLTGLEREKIE EY +++ IAE R +LA+E VL+II +EL EI++R++ Sbjct: 421 AQAILDMRLQRLTGLEREKIEQEYQDIVRLIAELRAVLADEEKVLQIIRDELSEIKERFN 480 Query: 480 DDRRTEITIGE-ESILDEDLIPREEVVITITHTGYIKRLPVSTYRSQKRGGRGVMGMDTK 538 D+RRTEI +G E + DEDLIP E +VIT+TH GYIKRLP+STYRSQKRGGRGV GM T Sbjct: 481 DERRTEIVVGAVEQLDDEDLIPHEHIVITLTHKGYIKRLPLSTYRSQKRGGRGVQGMHTS 540 Query: 539 DQDFVEHLFVSNSHNYLMFFTDKGKVYRIKAYEIPELGRTARGTPIINLIQIEQGEKISA 598 + DFVEHL ++++H+ ++FFT+KGKVY+ K YEIPE GRTA+G PIINL+++++ E I+A Sbjct: 541 EDDFVEHLLITSTHDTVLFFTNKGKVYQAKGYEIPEFGRTAKGLPIINLLELDKDEWINA 600 Query: 599 VIQVEDADSDKYLFFATREGIVKKTPLEDYNNIRKGGLIAINLREEDSLIEVKLTDGEQN 658 +I +E D ++YL F+T++GI K++ L + +IR GLIAI+LRE D LI V+LTDG+++ Sbjct: 601 MIPIETFDDERYLVFSTKQGIAKRSSLSSFAHIRNNGLIAIHLREGDELISVRLTDGQKH 660 Query: 659 LIIGTARGMSITFSENDVRSMGRSATGVKGITLDDNDHVIGMDCVDKELEVLIVTSKGYG 718 LIIGT GM I F E DVR+MGRSATGVK ITLDDND V+ M+ ++ +VL+VT KG+G Sbjct: 661 LIIGTKNGMLIRFPETDVRTMGRSATGVKAITLDDNDEVVSMEILEDHHDVLVVTKKGFG 720 Query: 719 KRTPALDYRSQTRGGKGIKTINLTDKNGPVVGLKVVKKDEDLMIITTSGTLIRTSMDGIS 778 KRTPA +YR Q+RGGKG+KT N+T++NG VV + V +EDLM+ITTSG LIR S+ IS Sbjct: 721 KRTPASEYRVQSRGGKGLKTCNVTERNGSVVAVTTVVGNEDLMVITTSGVLIRISVSDIS 780 Query: 779 TMGRYAQGVKLINIR---EDDAVATLCR 803 GR AQGVKLI + E + VAT+ + Sbjct: 781 RTGRVAQGVKLIRLSGEDEHECVATVAK 808 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,698,011,151 Number of extensions: 201118045 Number of successful extensions: 585457 Number of sequences better than 1.0e-05: 4582 Number of HSP's gapped: 558749 Number of HSP's successfully gapped: 6156 Length of query: 848 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 703 Effective length of database: 1,694,649,028 Effective search space: 1191338266684 Effective search space used: 1191338266684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)