BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0015.p
         (62 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6D2.1 B3K6D2_9BACI Aminotransferase class I and II                  65   1e-09
C2VCL5.1 C2VCL5_BACCE Transcriptional regulator, GntR family wit...    60   7e-08
C2PFP3.1 C2PFP3_BACCE Transcriptional regulator, GntR family wit...    60   8e-08
C2UW21.1 C2UW21_BACCE Transcriptional regulator, GntR family wit...    60   8e-08
C0ZL60.1 C0ZL60_BREBN Probable transcriptional regulator               60   9e-08

>B3K6D2.1 B3K6D2_9BACI Aminotransferase class I and II
          Length = 272

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIR 55
           + +RTLF  A K GLLLN G++YDR+D +HLRLS+ YAS  +LE GL  LA LIR
Sbjct: 214 ISIRTLFEQALKEGLLLNPGNIYDRNDQQHLRLSFAYASYDQLEKGLIRLAELIR 268


>C2VCL5.1 C2VCL5_BACCE Transcriptional regulator, GntR family with
           aminotransferase domain
          Length = 461

 Score = 60.1 bits (144), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRKL 57
           +P++ LF  A   G+LLN G +Y+    + +RLSY YASP ++ TG+ +L+GLIRKL
Sbjct: 403 IPMKRLFSEALSKGILLNPGRIYEEESDQCIRLSYGYASPEQIITGIKLLSGLIRKL 459


>C2PFP3.1 C2PFP3_BACCE Transcriptional regulator, GntR family with
           aminotransferase domain
          Length = 461

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/57 (45%), Positives = 40/57 (70%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRKL 57
           +P++ LF  A   G+LLN G +Y+    R++RLSY YASP ++ +G+ +L+ LIRKL
Sbjct: 403 IPMKKLFSEALSKGILLNPGRIYEEESDRYIRLSYGYASPEQMTSGIKLLSELIRKL 459


>C2UW21.1 C2UW21_BACCE Transcriptional regulator, GntR family with
           aminotransferase domain
          Length = 461

 Score = 59.7 bits (143), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIRKL 57
           +P++ LF  A   G+LLN G +Y+    + +RLSY YASP ++ TG+ +L+GLIRKL
Sbjct: 403 IPMKRLFSEALSKGILLNPGRIYEEESDQCIRLSYGYASPEQIITGIKLLSGLIRKL 459


>C0ZL60.1 C0ZL60_BREBN Probable transcriptional regulator
          Length = 482

 Score = 59.7 bits (143), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 1   VPLRTLFRAAHKAGLLLNTGDLYDRSDSRHLRLSYVYASPAELETGLPILAGLIR 55
           V +R LF  A   G+LLN G +YD++DS HLRLSYVYA  A++E  L ++A L+R
Sbjct: 425 VSMRKLFTEALAKGVLLNPGFVYDQTDSHHLRLSYVYAEEADMEKALYVIAQLLR 479


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.140    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 382,122,307
Number of extensions: 12548518
Number of successful extensions: 21840
Number of sequences better than 1.0e-05: 63
Number of HSP's gapped: 21840
Number of HSP's successfully gapped: 63
Length of query: 62
Length of database: 3,060,696,203
Length adjustment: 34
Effective length of query: 28
Effective length of database: 2,740,381,693
Effective search space: 76730687404
Effective search space used: 76730687404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)