BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0009.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8VWK3.1 A8VWK3_9BACI Molybdopterin-guanine dinucleotide biosynt... 128 3e-28 Q1K2F9.1 Q1K2F9_DESAC Molybdopterin-guanine dinucleotide biosynt... 117 1e-24 C0UWC5.1 C0UWC5_9BACT Molybdopterin-guanine dinucleotide biosynt... 117 1e-24 Q2B1G4.1 Q2B1G4_9BACI Molybdopterin-guanine dinucleotide biosynt... 116 1e-24 C1TBY0.1 C1TBY0_9FIRM Molybdopterin-guanine dinucleotide biosynt... 114 4e-24 >A8VWK3.1 A8VWK3_9BACI Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein Length = 200 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 107/206 (51%), Gaps = 21/206 (10%) Query: 4 FSGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRFLGL 63 +GI+L+GG SRRMG++KALL +G I R+ + ++ + + Y FL + Sbjct: 3 ITGIILAGGQSRRMGQNKALLPVGDETNIGRIKRLIEARTDDQLLVTNDPD--SYEFLQI 60 Query: 64 TQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRN 123 D + G GPLAG+ AL QS T W+++ ACD+PF E R++ A E Sbjct: 61 PMFEDEHKGHGPLAGIEVALRQSTTTWNLIVACDMPFVDGEIARFLCKKAKEE------- 113 Query: 124 YSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLYIPE 183 G+L AAVPE G+ PL YHK LP + EAL R++ LD ++ +YI E Sbjct: 114 ---GAL---AAVPE-YNGKRHPLFACYHKDFLPYVTEALDQGEKRMINVLDQVKTVYISE 166 Query: 184 -----AGFTGGPEPSPLYNMNTPEDY 204 AG++ YNMN PEDY Sbjct: 167 DDMKDAGWSDAHLKLAFYNMNHPEDY 192 >Q1K2F9.1 Q1K2F9_DESAC Molybdopterin-guanine dinucleotide biosynthesis MobB region Length = 200 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/209 (33%), Positives = 111/209 (53%), Gaps = 20/209 (9%) Query: 5 SGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRFLGLT 64 +GI+L+GG SRRMGR+K L +GG+P+ R+ L V +I +Q+R E + L Sbjct: 7 TGIILAGGKSRRMGREKLFLDVGGQPLFERVFYPLRMVFDDILIVANDQKRFERYQVPL- 65 Query: 65 QVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRNY 124 V D+YPG L GL++ L+ + T W V A D+PF + +RY+++ NY Sbjct: 66 -VSDIYPGSA-LGGLYSGLMHAATPWGFVCAADMPFVNLSLIRYLLTQTT--------NY 115 Query: 125 SGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLYIPEA 184 D VP S G V+PL Y KR LP +E+AL R++++++ + L V +P Sbjct: 116 -------DIVVPVSEQG-VEPLFACYSKRCLPAMEQALENRQYKIIDVWETLRVCEVPMT 167 Query: 185 GFTGGPE-PSPLYNMNTPEDYAAALELVS 212 F P + N+N ED + +L++ Sbjct: 168 KFRHLPAIETAFINLNREEDVHYSHQLLT 196 >C0UWC5.1 C0UWC5_9BACT Molybdopterin-guanine dinucleotide biosynthesis protein A Length = 202 Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 22/206 (10%) Query: 5 SGILLSGGYSRRMGRDKALLGL--GGRPVIARLADELSKVAAGPVIACGEQEREEYRFLG 62 +G++L GG SRRMG +KAL+ L G VI +AD+L V VI G Q E YRFL Sbjct: 8 TGLILVGGKSRRMGFNKALIELTPSGPTVIQTVADKLKDVCPE-VILVGSQ-LEPYRFLN 65 Query: 63 LTQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIR 122 L QVPD +P G L G+++ L + T++++V ACD+PF + E ++YM+S L R Sbjct: 66 LPQVPDEFPNTGSLGGIYSGLKSARTDYALVVACDMPFLNTELLKYMIS--------LPR 117 Query: 123 NYSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMECLDALEVLYIP 182 +Y D +P + +P+ +Y KR +P + +++ +R++ D +V YIP Sbjct: 118 DY-------DVLIP--VLDEPEPMHAIYSKRCIPWIAQSIESGSYRIIGWFDRAKVKYIP 168 Query: 183 EAGFTG-GPEPSPLYNMNTPEDYAAA 207 + + +NMNTPE+ A Sbjct: 169 KETIARFDSDFMSFFNMNTPEELEFA 194 >Q2B1G4.1 Q2B1G4_9BACI Molybdopterin-guanine dinucleotide biosynthesis protein A Length = 198 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/211 (36%), Positives = 111/211 (52%), Gaps = 24/211 (11%) Query: 5 SGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRFLGLT 64 +GI+L+GG S RMG++KAL+ L G VI R+ DEL K +I E +Y FLG Sbjct: 4 TGIILAGGRSSRMGQNKALMTLEGVTVIERVRDELKKAVQDIIIVTNSPE--DYDFLGCP 61 Query: 65 QVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIRNY 124 D+Y GPLAGLHA L S T++++ AACD+PF SA +++ E Sbjct: 62 MAGDIYQDGGPLAGLHAGLKNSQTDYNLAAACDMPFLSAGLGSILLNELGE--------- 112 Query: 125 SGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHG--RRFRVMECLDA--LEVLY 180 AAVP+ I+G++ PL G YHK + EE L R+ R + D+ L Sbjct: 113 ------CQAAVPK-ISGQLHPLFGAYHKGLYRRAEEMLEAGDRKMRNLLTEDSRILSEKE 165 Query: 181 IPEAGFTGGPEPSPLYNMNTPEDYAAALELV 211 + E G+ G E + +NMN P +Y A ++ Sbjct: 166 LLEKGWGG--EEACFFNMNHPSEYEQAKRML 194 >C1TBY0.1 C1TBY0_9FIRM Molybdopterin-guanine dinucleotide biosynthesis protein A Length = 201 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/209 (33%), Positives = 111/209 (53%), Gaps = 21/209 (10%) Query: 3 QFSGILLSGGYSRRMGRDKALLGLGGRPVIARLADELSKVAAGPVIACGEQEREEYRFLG 62 SGI+L+GG S RMG +KALL + G P+I R+A ++ V + +IA G+++ Y G Sbjct: 2 NISGIILAGGKSSRMGTNKALLDIDGIPLIERVARIIAPVCSEIIIAGGDEK--TYGHTG 59 Query: 63 LTQVPDLYPGCGPLAGLHAALLQSPTEWSVVAACDLPFASAEFMRYMMSSAAEPGRDLIR 122 +PD+YPGCGPL+G+HA LL + +S VAACD+P+ + + ++ + S I Sbjct: 60 YKIIPDIYPGCGPLSGIHAGLLSAKHFYSFVAACDIPYPNVQTIQLLTKS--------IE 111 Query: 123 NYSGGSLQIDAAVPESITGRVQPLLGLYHKRVLPVLEEALHGRRFRVMEC--LDALEVLY 180 +Y V SI ++PL +Y K V E AL +++++ L + Sbjct: 112 DYD--------VVMLSIQNHLEPLFSIYSKNFAAVAETALKQGIYKIIDLIPLTRWKTFE 163 Query: 181 IPEAGFTGGPEPSPLYNMNTPEDYAAALE 209 + + + + L N NTPED+ A E Sbjct: 164 LQTSDMIFDQQKN-LMNANTPEDFKKAKE 191 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,427,864,018 Number of extensions: 59415549 Number of successful extensions: 138476 Number of sequences better than 1.0e-05: 658 Number of HSP's gapped: 137837 Number of HSP's successfully gapped: 658 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)