BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0006.p (303 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q829P1.1 Q829P1_STRAW Putative multiple sugar ABC transporter pe... 290 1e-76 B5HR42.1 B5HR42_9ACTO ABC transporter permease protein 289 2e-76 B5HK95.1 B5HK95_STRPR ABC transporter permease protein 285 3e-75 Q9X9Y5.1 Q9X9Y5_STRCO Putative integral membrane transport protein 285 3e-75 C0T361.1 C0T361_9PSEU Carbohydrate ABC transporter membrane prot... 281 6e-74 >Q829P1.1 Q829P1_STRAW Putative multiple sugar ABC transporter permease protein Length = 314 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 139/298 (46%), Positives = 205/298 (68%), Gaps = 7/298 (2%) Query: 8 KRKKGEA------WIPYLLIAPTVLLIAGILIFPIFRVFDLSVQSYDFTRLQDAGYIGLE 61 +R++G A ++PYLLIAP LL+ G + +P+ VF S+++++ T+ GY G + Sbjct: 15 RRRRGSATPRTLPYLPYLLIAPAGLLMLGFIAYPVLSVFYYSLRNFNPTKPWRNGYAGFD 74 Query: 62 NFRHIFTEDDLFYSTLVTTLKWVFSEVALQLVFGLIVALLLNQSFXXXXXXXXXXXXPWA 121 NF IFT+D F+ TL + KWV EV LQL+FGL +AL++NQ+F PWA Sbjct: 75 NFVQIFTKDTQFWDTLTFSAKWVVVEVGLQLLFGLALALIVNQTFVGRALGRALVFSPWA 134 Query: 122 VSGVLTTMLWSLMFNQHIGIINDILLKLGIIHEKIAWLANPDTVFGSVVFAELWRGIPFF 181 VSGVLT+ +W L++N GI L +G+ +WL++ TVF + V A+LWRG+PFF Sbjct: 135 VSGVLTSAIWVLLYNSQTGITR-YLADMGVGEYGTSWLSDTSTVFPAAVIADLWRGVPFF 193 Query: 182 AITLLAALQTIPHEVYESCEVDGAGKLKKLFHITLPYLKESIIFATLLRAIWEFNSIDMI 241 AI +LA LQ++ ++YE+ EVDGAG+L++ FHITLP+LK++I+ +TLLRA+WEFN++D++ Sbjct: 194 AILILADLQSVSKDLYEAAEVDGAGRLRQFFHITLPHLKDAIVLSTLLRAVWEFNNVDLL 253 Query: 242 FTMTNGGPMDMTTTLPIYMMKTSILEGNYGYGSALGVVTFLFLMIFVILYLKLNRAGG 299 +T+T GGP TTTLP+Y+ TS+ N+GY SAL V F L+ F I+YL+L++ GG Sbjct: 254 YTLTGGGPAGETTTLPLYIANTSVDAHNFGYASALTTVAFTILLFFSIVYLRLSKFGG 311 >B5HR42.1 B5HR42_9ACTO ABC transporter permease protein Length = 311 Score = 289 bits (739), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 138/284 (48%), Positives = 198/284 (69%), Gaps = 1/284 (0%) Query: 16 IPYLLIAPTVLLIAGILIFPIFRVFDLSVQSYDFTRLQDAGYIGLENFRHIFTEDDLFYS 75 +PYLLIAP LL+ G + +P+ VF S+Q+Y+ T+ GY G +NF HIFTED F+ Sbjct: 26 LPYLLIAPAALLMLGFIAYPVISVFYYSLQNYNPTKPWRNGYAGFDNFVHIFTEDPQFWD 85 Query: 76 TLVTTLKWVFSEVALQLVFGLIVALLLNQSFXXXXXXXXXXXXPWAVSGVLTTMLWSLMF 135 TL + KWVF EV LQL+FGL +AL++NQ+F PWAVSGVLT+ +W L++ Sbjct: 86 TLTFSAKWVFVEVGLQLLFGLALALIVNQTFVGRAVGRALVFSPWAVSGVLTSAIWVLLY 145 Query: 136 NQHIGIINDILLKLGIIHEKIAWLANPDTVFGSVVFAELWRGIPFFAITLLAALQTIPHE 195 N G+ L +GI +WL++ TVF + V A+LWRG+PFFAI +LA LQ++ + Sbjct: 146 NSQTGVTR-YLADMGIGSYGTSWLSDTSTVFSAAVVADLWRGVPFFAILILADLQSVSKD 204 Query: 196 VYESCEVDGAGKLKKLFHITLPYLKESIIFATLLRAIWEFNSIDMIFTMTNGGPMDMTTT 255 +YE+ EVDGA +K+ +HITLP+LK++II +TLLRA+WEFN++D+++T+T GGP TTT Sbjct: 205 LYEAAEVDGASTIKQFWHITLPHLKDAIILSTLLRAVWEFNNVDLLYTLTGGGPAGETTT 264 Query: 256 LPIYMMKTSILEGNYGYGSALGVVTFLFLMIFVILYLKLNRAGG 299 LP+Y+ TS+ N+GY SAL V F+ L+ ++YL+L++ GG Sbjct: 265 LPLYIANTSVDAHNFGYASALTTVAFVILLFCSMVYLRLSKFGG 308 >B5HK95.1 B5HK95_STRPR ABC transporter permease protein Length = 312 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 139/288 (48%), Positives = 202/288 (70%), Gaps = 2/288 (0%) Query: 16 IPYLLIAPTVLLIAGILIFPIFRVFDLSVQSYDFTRLQDAGYIGLENFRHIFTEDDLFYS 75 +PYLLIAP LL+ G + +P+ VF S+Q Y+ T+ G+ GL NF IFT+D F+ Sbjct: 27 LPYLLIAPAGLLMLGFIAYPVLSVFYYSLQEYNPTKPWRNGFAGLSNFTTIFTDDPHFWG 86 Query: 76 TLVTTLKWVFSEVALQLVFGLIVALLLNQSFXXXXXXXXXXXXPWAVSGVLTTMLWSLMF 135 TL +LKWV EV+LQL+FGL +AL++NQ+F PWAVSGVLT+ +W L++ Sbjct: 87 TLTFSLKWVVVEVSLQLLFGLALALIVNQTFFGRALGRALVFSPWAVSGVLTSAIWVLLY 146 Query: 136 NQHIGIINDILLKLGIIHEKIAWLANPDTVFGSVVFAELWRGIPFFAITLLAALQTIPHE 195 N GI L +GI +WL++ TVF + V A+LWRG+PFFAI +LA LQ++P + Sbjct: 147 NSQTGITR-YLADMGIGEYGTSWLSDTATVFPAAVVADLWRGVPFFAILILADLQSVPKD 205 Query: 196 VYESCEVDGAGKLKKLFHITLPYLKESIIFATLLRAIWEFNSIDMIFTMTNGGPMDMTTT 255 +YE+ EVDGA ++++ HITLP+LK++II +TLLRA+WEFN++D+++T+T GGP TTT Sbjct: 206 LYEAAEVDGANRVRQFLHITLPHLKDAIILSTLLRAVWEFNNVDLLYTLTGGGPAGETTT 265 Query: 256 LPIYMMKTSILEGNYGYGSALGVVTFLFLMIFVILYLKLNRAGGMQDE 303 LP+Y+ TS+ ++GY SAL V F+ L+ F ++YL+L++ GG QD+ Sbjct: 266 LPLYIANTSVDAHDFGYASALTTVAFVILLFFSMVYLRLSKFGG-QDK 312 >Q9X9Y5.1 Q9X9Y5_STRCO Putative integral membrane transport protein Length = 311 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 137/284 (48%), Positives = 198/284 (69%), Gaps = 1/284 (0%) Query: 16 IPYLLIAPTVLLIAGILIFPIFRVFDLSVQSYDFTRLQDAGYIGLENFRHIFTEDDLFYS 75 +PYLLI P LL+ G + +P+ VF S+Q Y+ T+ G+ G +NF IFTED +F+ Sbjct: 26 LPYLLIGPAALLMLGFIAYPVISVFYYSLQEYNPTKPWRNGFAGFDNFVKIFTEDPVFWD 85 Query: 76 TLVTTLKWVFSEVALQLVFGLIVALLLNQSFXXXXXXXXXXXXPWAVSGVLTTMLWSLMF 135 TLV + KWVF EV LQL+FGL +AL++NQ+F PWAVSGVLT+ +W L++ Sbjct: 86 TLVFSAKWVFVEVGLQLLFGLALALIVNQTFVGRGVGRAMVFSPWAVSGVLTSAIWVLLY 145 Query: 136 NQHIGIINDILLKLGIIHEKIAWLANPDTVFGSVVFAELWRGIPFFAITLLAALQTIPHE 195 N G+ L +GI +WL++ TVF + V A+LWRG+PFFAI +LA LQ++ + Sbjct: 146 NSQTGVTR-YLADMGIGSYGTSWLSDTSTVFSAAVVADLWRGVPFFAILILADLQSVSKD 204 Query: 196 VYESCEVDGAGKLKKLFHITLPYLKESIIFATLLRAIWEFNSIDMIFTMTNGGPMDMTTT 255 +YE+ EVDGA +LK+ +HITLP+LK++II +TLLRA+WEFN++D+++T+T GGP TTT Sbjct: 205 LYEAAEVDGASRLKQFWHITLPHLKDAIILSTLLRAVWEFNNVDLLYTLTGGGPAGETTT 264 Query: 256 LPIYMMKTSILEGNYGYGSALGVVTFLFLMIFVILYLKLNRAGG 299 LP+Y+ TS+ ++GY SAL V F+ L+ I+YL+L++ GG Sbjct: 265 LPLYIANTSVDAHDFGYASALTTVAFVILLFCSIVYLRLSKFGG 308 >C0T361.1 C0T361_9PSEU Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 291 Score = 281 bits (719), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 137/288 (47%), Positives = 196/288 (68%), Gaps = 1/288 (0%) Query: 11 KGEAWIPYLLIAPTVLLIAGILIFPIFRVFDLSVQSYDFTRLQDAGYIGLENFRHIFTED 70 + + W PY LIAPT+LL+A L++PI V S Q Y+ T+ G+ GL+NFR + ED Sbjct: 2 RTKTWAPYALIAPTLLLMAVFLVYPIGSVLYYSFQDYNVTQPWKNGFAGLDNFRVMLFED 61 Query: 71 DLFYSTLVTTLKWVFSEVALQLVFGLIVALLLNQSFXXXXXXXXXXXXPWAVSGVLTTML 130 LF+ +LV + KWV EV LQL GL++AL++N++F PWAVSGVLTT + Sbjct: 62 PLFWQSLVFSAKWVLVEVGLQLALGLVLALIVNETFVARGLARALVFSPWAVSGVLTTGI 121 Query: 131 WSLMFNQHIGIINDILLKLGIIHEKIAWLANPDTVFGSVVFAELWRGIPFFAITLLAALQ 190 W L++N GI L + GI + L NPDTVF + V ELWRG+PFFAI LLA LQ Sbjct: 122 WILLYNPSTGIFQQ-LAQWGIGDAGTSVLGNPDTVFPATVVTELWRGVPFFAIMLLADLQ 180 Query: 191 TIPHEVYESCEVDGAGKLKKLFHITLPYLKESIIFATLLRAIWEFNSIDMIFTMTNGGPM 250 TIP ++YE+ VDGA + ++ +TLP+L+++I+ +TLLRA+WEFN++D+I+T+T GGP Sbjct: 181 TIPKDLYEAASVDGANRWRRFLSVTLPHLRDAIVLSTLLRAVWEFNNVDLIYTLTGGGPA 240 Query: 251 DMTTTLPIYMMKTSILEGNYGYGSALGVVTFLFLMIFVILYLKLNRAG 298 + TTTLP+Y+ + ++ ++GYGSAL V F+ L+ ILYL+L++ G Sbjct: 241 NQTTTLPLYVARKAVDSHDFGYGSALTVAGFVILLFCSILYLRLSKFG 288 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,704,826,467 Number of extensions: 65425362 Number of successful extensions: 227471 Number of sequences better than 1.0e-05: 6220 Number of HSP's gapped: 218825 Number of HSP's successfully gapped: 6220 Length of query: 303 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 168 Effective length of database: 1,788,859,178 Effective search space: 300528341904 Effective search space used: 300528341904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)