BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0005.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5EE58.1 C5EE58_9FIRM Integral membrane transport protein 248 5e-64 Q987D6.1 Q987D6_RHILO ABC transporter, permease protein 190 1e-46 B1DIM4.1 B1DIM4_9BACL Binding-protein-dependent transport system... 189 3e-46 C4EIU2.1 C4EIU2_STRRS Carbohydrate ABC transporter membrane prot... 186 3e-45 A8RLX4.1 A8RLX4_9CLOT Putative uncharacterized protein 186 3e-45 >C5EE58.1 C5EE58_9FIRM Integral membrane transport protein Length = 278 Score = 248 bits (632), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 119/264 (45%), Positives = 163/264 (61%), Gaps = 1/264 (0%) Query: 17 IPLALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYISVWNENNFSQYFLN 76 +PL + + PF W + TSLK E DI+ + YLP P T NY++ W + FSQYFLN Sbjct: 15 LPLTAFVGFICFPFYWTLVTSLKVEGDIIKRPVRYLPDPATAMNYVTAWRDVGFSQYFLN 74 Query: 77 XXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQMMPVILFVIPLFLIFKNL 136 + GYA+SRFKFKGK FML+LL TQ +P + +IPLF+ F L Sbjct: 75 SLLVSAVACLMTVASALLVGYALSRFKFKGKQPFMLVLLCTQFIPSAMLIIPLFITFSKL 134 Query: 137 GLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVDXXXXXXXXXXXXXPIVL 196 LIN +SL+L Y Q+PF++I+M+GF+ P ++EA VD P++ Sbjct: 135 HLINNHWSLILVYTTFQIPFSSIMMKGFVEKIPYHLEEAAYVDGCSRFQALVKVVLPVLT 194 Query: 197 PGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIGEFSVQYASLAAGSIIGLI 256 PG+VA ++F+FI WNEFL A F+ +FTIP+GL FM G+F + Y +LAAGS+I L Sbjct: 195 PGVVACASFSFISCWNEFLFALMFVNNTKKFTIPVGLSFMQGQFDINYGALAAGSMIALA 254 Query: 257 PPVLLFMYIQRYLVEGL-GGAVKG 279 P +L+F+Y+Q+YLV GL GAVKG Sbjct: 255 PAILMFIYVQKYLVGGLTAGAVKG 278 >Q987D6.1 Q987D6_RHILO ABC transporter, permease protein Length = 281 Score = 190 bits (483), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 1/280 (0%) Query: 1 MSSKTARRIGSKLLFYIPLALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFEN 60 + SK RR+ + + Y LA + + P +W TSLK E DI++ + Y+P+ TF+N Sbjct: 2 IESKRRRRVIANIATYFVLATLSMFCIGPMIWMFLTSLKYEADIVTQTMQYIPRRVTFDN 61 Query: 61 YISVWNENNFSQYFLNXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQMM 120 Y+++W ++ F + N + YA SRF F+G++ ML L +M Sbjct: 62 YVAIWTQSGFPRLIANSLVVTFLTVTICVATGTLAAYAFSRFAFRGRTQLMLGYLIVRMF 121 Query: 121 PVILFVIPLFLIFKNLGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVDX 180 P ++ +IPL+++ + +GL+++ + L L Y +P +++GF S PKE++ A +D Sbjct: 122 PAVMMIIPLYVVMRGVGLVDSRFGLALAYTSFLLPLFVWMLKGFFDSAPKELESAARIDG 181 Query: 181 XXXXXXXXXXXXPIVLPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIGEF 240 P+ G+VA+S F I WNEFL A T T P+GL+ M+GEF Sbjct: 182 STRLGAMVRIVMPLARNGLVASSVFIAIAAWNEFLFALMLTTGQGSRTWPVGLQLMVGEF 241 Query: 241 SVQYASLAAGSIIGLIPPVLLFMYIQRYLVEGL-GGAVKG 279 + + LAAG I+ ++P ++LF +QR +V+GL GA+KG Sbjct: 242 QLPWGVLAAGGILSILPVIVLFAIVQRTMVQGLTAGAIKG 281 >B1DIM4.1 B1DIM4_9BACL Binding-protein-dependent transport systems inner membrane component Length = 275 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 96/262 (36%), Positives = 151/262 (57%), Gaps = 1/262 (0%) Query: 19 LALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYISVWNENNFSQYFLNXX 78 LA+ ++++ P W + TSLK +I S I Y P+ FTFENY +++ + F Y N Sbjct: 14 LAVFFLIMVFPLYWIVITSLKPRKEIFSLPIRYWPEKFTFENYANIFKVSKFHVYIGNSL 73 Query: 79 XXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQMMPVILFVIPLFLIFKNLGL 138 ++GY M+RF+F+G M+ TQM+P + + PL+L+ ++ L Sbjct: 74 LISVIAALIVICIATLSGYVMARFQFRGHKQIMMAFFLTQMLPGFISLAPLYLLMADMNL 133 Query: 139 INTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVDXXXXXXXXXXXXXPIVLPG 198 IN +SLVL Y V+ +PF+TI+++GF P ++EA M+D PI+LPG Sbjct: 134 INNRFSLVLAYTVMLIPFSTIMLRGFFQRIPSSLEEAAMIDGCSRLTALIRVIIPIMLPG 193 Query: 199 IVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIGEFSVQYASLAAGSIIGLIPP 258 I +T FAF+ WNE +A FI + T+P+ + + +F V + S++AG+++ +IP Sbjct: 194 IASTFIFAFVQNWNELFMAVMFIDDENLKTLPVAMNSFVMKFDVDWGSMSAGTVLSVIPT 253 Query: 259 VLLFMYIQRYLVEGL-GGAVKG 279 V+LF + QRY+VEGL GA KG Sbjct: 254 VVLFAFAQRYIVEGLTQGAEKG 275 >C4EIU2.1 C4EIU2_STRRS Carbohydrate ABC transporter membrane protein 2, CUT1 family Length = 293 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/270 (39%), Positives = 159/270 (58%), Gaps = 6/270 (2%) Query: 11 SKLLFYIPLALTLILVLVPFLWAISTSLKKETDIMSPVIHYLPQPFTFENYISVWNENNF 70 S+ ++PL L L+ LVPF W + + + LP P TF+N+ +VWNE F Sbjct: 29 SRWQIWVPLGLYLLFTLVPFYWMLVFAFRPRGSS-----SLLPWPITFDNFATVWNELGF 83 Query: 71 SQYFLNXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQMMPVILFVIPLF 130 + +F N GYA++R++F+GK FML +L TQ +P + +IPLF Sbjct: 84 AMFFKNSLMVGAASLIMTTVIALAGGYALARYEFRGKRLFMLGMLCTQFIPGAMMLIPLF 143 Query: 131 LIFKNLGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVDXXXXXXXXXXX 190 IF+ LGL+N+ +SLV+ V Q+P + IL+ GFI + P E+++A VD Sbjct: 144 EIFRTLGLVNSLWSLVIAETVFQLPLSLILISGFIKNVPVELEQAAWVDGCGRLRAFFAV 203 Query: 191 XXPIVLPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIGEFSVQYASLAAG 250 P++ P +VA +FAFI WN FL A F+ ++FT+P+GL + +GEFSV + +LAAG Sbjct: 204 VLPLLRPALVAVGSFAFIHSWNNFLFALMFVNEQEKFTVPVGLAYTLGEFSVDFGALAAG 263 Query: 251 SIIGLIPPVLLFMYIQRYLVEGL-GGAVKG 279 ++ +P VL+F IQRYLV+G+ GAVKG Sbjct: 264 GVVAAVPVVLVFAVIQRYLVQGMSAGAVKG 293 >A8RLX4.1 A8RLX4_9CLOT Putative uncharacterized protein Length = 280 Score = 186 bits (471), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 159/281 (56%), Gaps = 3/281 (1%) Query: 1 MSSKTARRIGSKLLFYIPLALTLILVLVPFLWAISTSLK-KETDIMSPVIHYLPQPFTFE 59 M+ KT RR+ S LL Y+ LA L+L + PF+W + TSLK + +I + + YLP P + Sbjct: 1 MTMKTKRRLKS-LLKYLVLACFLVLTMFPFVWMLLTSLKGSQGEIYAFPVRYLPNPASAV 59 Query: 60 NYISVWNENNFSQYFLNXXXXXXXXXXXXXXXXXMNGYAMSRFKFKGKSAFMLILLATQM 119 NY+++ + NF +Y LN + Y +SRF F+ K+ +L L TQM Sbjct: 60 NYVAMLWKGNFGRYMLNSFFSSAVAATCAVFIAILASYVISRFHFRFKNVLLLFFLVTQM 119 Query: 120 MPVILFVIPLFLIFKNLGLINTPYSLVLFYIVLQVPFNTILMQGFISSTPKEIDEAGMVD 179 +P+ + + PL+ + ++N SL + Y + +PF+ + + GF S PK ++EA +D Sbjct: 120 IPMFIMLAPLYQLLAKAKMLNDLRSLAMLYTNMMIPFSVVTLCGFFDSVPKSLEEAAWID 179 Query: 180 XXXXXXXXXXXXXPIVLPGIVATSAFAFIGVWNEFLVAFSFITTPDRFTIPIGLKFMIGE 239 P+++PGI AT FAFI WNE +A FI TIP+GL +I + Sbjct: 180 GCGYFKALFKVVVPVIMPGIAATFIFAFINSWNELFMAVMFIDVDKFKTIPVGLNGLILK 239 Query: 240 FSVQYASLAAGSIIGLIPPVLLFMYIQRYLVEGL-GGAVKG 279 + +++ +AAG+I+ L+P + LF + Q+Y++EGL G+VKG Sbjct: 240 YDIKWGEMAAGTIMSLVPTMCLFAFAQKYMIEGLTAGSVKG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,422,775,892 Number of extensions: 52337107 Number of successful extensions: 220597 Number of sequences better than 1.0e-05: 6136 Number of HSP's gapped: 211503 Number of HSP's successfully gapped: 6139 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)