BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0004.p (370 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5EE57.1 C5EE57_9FIRM Secreted sugar-binding protein 244 1e-62 C4EIT6.1 C4EIT6_STRRS Carbohydrate ABC transporter substrate-bin... 228 1e-57 Q829N7.1 Q829N7_STRAW Putative secreted sugar-binding protein 220 2e-55 C0T359.1 C0T359_9PSEU Carbohydrate ABC transporter substrate-bin... 218 7e-55 Q93RU4.1 Q93RU4_STRCO Putative secreted sugar-binding protein 218 8e-55 >C5EE57.1 C5EE57_9FIRM Secreted sugar-binding protein Length = 450 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 208/377 (55%), Gaps = 13/377 (3%) Query: 1 VDYLGVPGDLSAYEQKVNVAISAEQAPDIMN---DFKADLLSRDVLEPLDTYFDSWADKD 57 ++Y+G+P S + K+ VA++ APD+ ++A + D LEPLD YFDSW + D Sbjct: 79 IEYVGLPN--SDAKNKIEVAVTGNAAPDVCGMPPQWQAGFILNDALEPLDAYFDSWEEHD 136 Query: 58 LISSELIASNRKLDTKEGKLYALPYSSQTWN--LWLRPDWFKEAGLQLPDTWDQFFEDIA 115 I+ ++ S R L + KLY +P +S T+N W R DWF+E G++ P TWD F++ + Sbjct: 137 KINQSIVQSLRTLSVDD-KLYCIPNTS-TFNPMFWGRKDWFEEKGVEAPGTWDDFYDLVE 194 Query: 116 KLTDKSKDRYGLSIRGGAGSANTLEMLMYSYSGITDYFTPEGKSTINDPLHAEFLEKYLG 175 TD YG SIRGGAG L+ +Y+YSGIT FT +GKST+NDP + E L++ Sbjct: 195 LFTDSDAGTYGFSIRGGAGGPMQLQEYLYAYSGITQPFTEDGKSTLNDPKNVEALDRLKD 254 Query: 176 AYNVYTPEDDLNKGWTELAATFQSNKAAIVVHNLGSASSHEKAFGGDYTKFEAVPFPKSV 235 YN YTPE D++ G+ E+ A F + AA++ HNLGS H K G KF A P S Sbjct: 255 IYNKYTPESDISNGYKEMVAAFDTGSAAMIQHNLGSFGEHSKTLG--EGKFFAFAPPVSA 312 Query: 236 KGYREHPGLAPL-GLTMSKTAKNKEAVWKFMTFYLSHDINSQYAKLYGEIPANKDAASDA 294 G R G P+ G M K ++ K+ W+F++F S + S + + G++P + D ++ Sbjct: 313 TGKRVISGGYPVNGYVMFKQSQVKDEAWRFISFLCSAESQSYWNQNIGQVPTHTDLTNED 372 Query: 295 WVQDIPYMKSASDLLNSADTHFADNPYYLPGYSNIQKK-AESMIQKVMAKKMTGTEMLNE 353 WV + ++ A + + +T P YLP Y +IQ A Q V+A + + E L E Sbjct: 373 WVVNTQHINEAMKMQSDDNTIAFPYPLYLPDYQSIQDSIAAPGFQAVLAGQKSSEEFLTE 432 Query: 354 WAKLLEAEKQSYDQAQK 370 WA + + Y Q K Sbjct: 433 WADAMTGAEAEYTQLIK 449 >C4EIT6.1 C4EIT6_STRRS Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 438 Score = 228 bits (580), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 197/371 (53%), Gaps = 9/371 (2%) Query: 1 VDYLGVPGDLSAYEQKVNVAISAEQAPDIMNDFKA---DLLSRDVLEPLDTYFDSWADKD 57 V Y+G+P ++ +QK + AI+ PD+ A L+++ LEPLD A Sbjct: 69 VKYVGIP--IAQAQQKYDTAIAGGGLPDVGGVSTAMLSSLVAQKALEPLDGRISGGALNG 126 Query: 58 LISSELIASNRKLDTKEGKLYALPYSSQTWNLWLRPDWFKEAGLQLPDTWDQFFEDIAKL 117 ++ +++ S K +GK Y +P S+ W R DWF EAGL+ P W FF KL Sbjct: 127 RLNDQVVTS-VKATVPDGKTYMVPMSTNMGVFWYRTDWFGEAGLEPPRNWGDFFTATEKL 185 Query: 118 TDKSKDRYGLSIRGGAGSANTLEMLMYSYSGITDYFTPEGKSTINDPLHAEFLEKYLGAY 177 TD +K+RYG +IRGGAGS + ++Y SGIT+ F +GK+T+NDP + LEK G Y Sbjct: 186 TDTAKNRYGFTIRGGAGSIAQMLEVVYGQSGITEIFDADGKATVNDPKNVAALEKLAGLY 245 Query: 178 NVYTPEDDLNKGWTELAATFQSNKAAIVVHNLGSASSHEKAFGGDYTKFEAVPFPKSVKG 237 TPE D++ + ++ A F AI+ HNLGS + H K G D K A+ PKS G Sbjct: 246 KKVTPEADVSNDYVKMVAQFDGGNIAIMQHNLGSFNDHVKTLGKD--KVAAMAVPKSDGG 303 Query: 238 YREHPGLAPLGLTMSKTAKNKEAVWKFMTFYLSHDINSQYAKLYGEIPANKDAASDAWVQ 297 + G+ + + + K+A +KF F S +NS +A+ G +PAN + +AW+Q Sbjct: 304 VQAILSNPVSGIGLFASGEKKDAAYKFAEFAASKAMNSHWAEKTGVLPANTEVNGEAWIQ 363 Query: 298 DIPYMKSASDLLNSADTHFADNPYYLPGYSNIQKK-AESMIQKVMAKKMTGTEMLNEWAK 356 +P++ A +LN T PYYLP ++ I K E QKV+ + + L+ +A Sbjct: 364 GLPHIAEAVKVLNDPATKVVQMPYYLPEFNAITKTDMEPEFQKVLQGTLPAKDFLDAFAA 423 Query: 357 LLEAEKQSYDQ 367 L + SY Q Sbjct: 424 KLTEAQASYKQ 434 >Q829N7.1 Q829N7_STRAW Putative secreted sugar-binding protein Length = 445 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 133/362 (36%), Positives = 196/362 (54%), Gaps = 10/362 (2%) Query: 1 VDYLGVPGDLSAYEQKVNVAISAEQAPDIMN---DFKADLLSRDVLEPLDTYFDSWADKD 57 V+Y+G+P ++ + K + AI PD+ A++ + LEPLD+ + Sbjct: 79 VNYVGIPA--ASAQSKYDTAIQGGGLPDVGGVGTAMLAEVAVQGALEPLDSRLKKSSLNG 136 Query: 58 LISSELIASNRKLDTKEGKLYALPYSSQTWNLWLRPDWFKEAGLQLPDTWDQFFEDIAKL 117 +S L+ S+R + LY +P S+ LW R D FK AGL P TW F+E KL Sbjct: 137 ELSQNLLDSSRAAGGGD-TLYQVPTSANNGTLWYRTDLFKSAGLDAPTTWSTFYEAADKL 195 Query: 118 TDKSKDRYGLSIRGGAGSANTLEMLMYSYSGITDYFTPEGKSTINDPLHAEFLEKYLGAY 177 TDK K+++G +IRGG GS +Y +GIT+++ E K+T+NDP + LEKY+ Y Sbjct: 196 TDKGKNKFGFTIRGGEGSIAPALDAVYGQTGITEFWNGE-KTTVNDPKNVAALEKYIALY 254 Query: 178 NVYTPEDDLNKGWTELAATFQSNKAAIVVHNLGSASSHEKAFGGDYTKFEAVPFPKSVKG 237 TP D+N +T++ A + S ++ HNLGS H KA G KF+ +P P G Sbjct: 255 KKDTPSADVNNDFTKMVAQWDSGTIGMLSHNLGSYQDHLKALGAG--KFKGIPNPTRDDG 312 Query: 238 YREHPGLAPLGLTMSKTAKNKEAVWKFMTFYLSHDINSQYAKLYGEIPANKDAASDAWVQ 297 R G+++ K++KNK A WKF+ F +S NS++ + G++PAN +AA D WVQ Sbjct: 313 TRVQISNPVDGMSVFKSSKNKAAAWKFIEFAVSSAENSKFNESAGQVPANTEAAKDTWVQ 372 Query: 298 DIPYMKSASDLLNSADTHFADNPYYLPGYSNIQKK-AESMIQKVMAKKMTGTEMLNEWAK 356 K A++ LN ADT PYYLP ++ I K E QK++ KM+ E L+ A Sbjct: 373 QAEPTKLAAEALNGADTKIVQLPYYLPDWNTISKADNEPNFQKLLLGKMSAKEFLDTLAD 432 Query: 357 LL 358 L Sbjct: 433 QL 434 >C0T359.1 C0T359_9PSEU Carbohydrate ABC transporter substrate-binding protein, CUT1 family Length = 399 Score = 218 bits (555), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 198/370 (53%), Gaps = 11/370 (2%) Query: 1 VDYLGVPGDLSAYEQKVNVAISAEQAPDI---MNDFKADLLSRDVLEPLDTYFDSWADKD 57 VDY+G+P S+ +QK + AI+ PD+ + ++++ ++ L PLD D K Sbjct: 34 VDYVGIPS--SSVQQKYDTAIAGGGTPDVGGVTTSYLSNMVGQEALVPLDEKVDGGPLKG 91 Query: 58 LISSELIASNRKLDTKEGKLYALPYSSQTWNLWLRPDWFKEAGLQLPDTWDQFFEDIAKL 117 + L+ + R+ + KLY++P S +W R DWF E G+Q P TWD+F KL Sbjct: 92 KLLPSLVETVRQT-APDNKLYSVPSSGNMDVIWYRTDWFAEKGVQPPRTWDEFTAAAEKL 150 Query: 118 TDKSKDRYGLSIRGGAGSANTLEMLMYSYSGITDYFTPEGKSTINDPLHAEFLEKYLGAY 177 TD S +RYG +IRGGAGS L Y+YSG TD F GKST++ P +A+ +EK Y Sbjct: 151 TDASANRYGYTIRGGAGSVFQLLTEAYAYSG-TDSFFEGGKSTVDAPGNADLVEKVAALY 209 Query: 178 NVYTPEDDLNKGWTELAATFQSNKAAIVVHNLGSASSHEKAFGGDYTKFEAVPFPKSVKG 237 TPE D+N +T++ A F AA++ HNLGS KA G K +A+P P G Sbjct: 210 KKATPEADVNNNYTQMVAQFTGGSAAMMHHNLGSYGDVTKALG---DKVQALPLPVGPSG 266 Query: 238 YREHPGLAPLGLTMSKTAKNKEAVWKFMTFYLSHDINSQYAKLYGEIPANKDAASDAWVQ 297 R G + + ++N++A WKF+ F S + NS + + G+IPAN D S W++ Sbjct: 267 KRTVVPNPTDGFAVFRNSENQDAAWKFVEFLTSAESNSYWNEKVGQIPANTDVRSQPWIE 326 Query: 298 DIPYMKSASDLLNSADTHFADNPYYLPGYSNIQKK-AESMIQKVMAKKMTGTEMLNEWAK 356 +K A D+L T P YLP YS+I K +E QKV+ ++ E L A+ Sbjct: 327 QNKPVKMALDVLEDPATITVPAPVYLPQYSSITKADSEPQYQKVLLGQLGADEFLKAMAE 386 Query: 357 LLEAEKQSYD 366 L +Q ++ Sbjct: 387 KLTTAQQEWE 396 >Q93RU4.1 Q93RU4_STRCO Putative secreted sugar-binding protein Length = 452 Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 202/373 (54%), Gaps = 10/373 (2%) Query: 1 VDYLGVPGDLSAYEQKVNVAISAEQAPDIMN---DFKADLLSRDVLEPLDTYFDSWADKD 57 V+Y+G+ + Y+ KV+ AI PD+ A ++ LEPLD D Sbjct: 82 VEYVGIAA--TEYQSKVDTAIQGGGLPDVGGVTASMLAGFSAQGALEPLDDRLGKSPLSD 139 Query: 58 LISSELIASNRKLDTKEGKLYALPYSSQTWNLWLRPDWFKEAGLQLPDTWDQFFEDIAKL 117 ++ +++ S + +G LY++P S+ L+ R D F++AGL P TWD+F+ KL Sbjct: 140 KVNKDMVESLKAAGGGDGTLYSMPTSANNGVLYYRTDLFEKAGLDAPTTWDKFYAAAEKL 199 Query: 118 TDKSKDRYGLSIRGGAGSANTLEMLMYSYSGITDYF-TPEGKSTINDPLHAEFLEKYLGA 176 TD K+ +G +IRGG+GS MY SGIT ++ + K+T+NDP + E LEKY Sbjct: 200 TDAGKNEFGYTIRGGSGSIAQALDAMYGQSGITSFWDAGKKKTTVNDPKNVEALEKYAAL 259 Query: 177 YNVYTPEDDLNKGWTELAATFQSNKAAIVVHNLGSASSHEKAFGGDYTKFEAVPFPKSVK 236 Y TP D+N + ++ A + + ++ HNLGS H KA G D KF +P P Sbjct: 260 YKKVTPAADVNNDFAKMVAQWDTGTIGMLNHNLGSYQDHVKALGVD--KFRGIPQPVGAS 317 Query: 237 GYREHPGLAPLGLTMSKTAKNKEAVWKFMTFYLSHDINSQYAKLYGEIPANKDAASDAWV 296 G R GL M K++KNKEA WKF+ F S + NS++ + G++P++ +AA+DAW+ Sbjct: 318 GKRVQVSNPVDGLGMFKSSKNKEAAWKFIEFATSKEQNSKFNESAGQVPSSTEAANDAWI 377 Query: 297 QDIPYMKSASDLLNSADTHFADNPYYLPGYSNIQK-KAESMIQKVMAKKMTGTEMLNEWA 355 Q K A+ LN T PYYLP ++ + K ++E QKV+ M+ + L+ A Sbjct: 378 QKAEPTKLAAQALNDGSTTIVQLPYYLPDWNTLSKSESEPGFQKVLLGDMSAKDFLDGLA 437 Query: 356 -KLLEAEKQSYDQ 367 KL EA+ + +Q Sbjct: 438 DKLNEAQAEWTEQ 450 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.130 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,306,812,175 Number of extensions: 97071680 Number of successful extensions: 184099 Number of sequences better than 1.0e-05: 631 Number of HSP's gapped: 184137 Number of HSP's successfully gapped: 631 Length of query: 370 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 233 Effective length of database: 1,770,017,148 Effective search space: 412413995484 Effective search space used: 412413995484 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)