BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0006.p
         (79 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8Z2.1 B3K8Z2_9BACI Septum formation initiator                       79   9e-14

>B3K8Z2.1 B3K8Z2_9BACI Septum formation initiator
          Length = 116

 Score = 79.3 bits (194), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 57/80 (71%), Gaps = 1/80 (1%)

Query: 1   VFFGWAGYIFFAQSAVIADKSERLAQKQESHETVTTSLNQLKYEVSRLKDDEYIGQLARK 60
           +F  WAG   ++Q+  I +++E LAQKQE +++V  SL Q+ +EV RLKD EYIGQ+ARK
Sbjct: 35  LFLIWAGSTLWSQNDRIRNQNEALAQKQEDYKSVEQSLIQITHEVERLKDPEYIGQIARK 94

Query: 61  WYNMYPPGETP-IRTEQSGE 79
            + +Y P ETP I+ + SGE
Sbjct: 95  KFGLYLPNETPIIQPQNSGE 114


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.131    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 446,785,823
Number of extensions: 12916564
Number of successful extensions: 48170
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 48173
Number of HSP's successfully gapped: 1
Length of query: 79
Length of database: 3,060,696,203
Length adjustment: 50
Effective length of query: 29
Effective length of database: 2,589,645,453
Effective search space: 75099718137
Effective search space used: 75099718137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)