BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0005.p
         (187 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8Z1.1 B3K8Z1_9BACI Spore cortex biosynthesis protein YabQ          118   2e-25
B1DIG0.1 B1DIG0_9BACL Spore cortex biosynthesis protein YabQ           75   3e-12
C0ZHF0.1 C0ZHF0_BREBN Spore cortex formation related protein           55   3e-06

>B3K8Z1.1 B3K8Z1_9BACI Spore cortex biosynthesis protein YabQ
          Length = 189

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/120 (50%), Positives = 81/120 (67%)

Query: 1   MNPAVQWVTLFYMMMAGTAMGLAYDSYRVLSLKLSFPKXXXXXXXXXXXXXXXXXVFRML 60
           MNP+VQW+TL +M+ +G AMG+A+DSYRVL+ +L FP+                 +FRML
Sbjct: 1   MNPSVQWITLLWMLFSGAAMGVAFDSYRVLAGQLRFPQWSKHALDFLYWIAAAFFIFRML 60

Query: 61  YAGNQGQLRFYVFVGLFLGVWIYFLIFSVTVRRFVVMLIQSVQYTCRLLWRVIEVLIGVP 120
           Y  N GQLRFYVFVGLF+GVW YFL++SV  +RFVVMLIQ  +     L+++  +L+  P
Sbjct: 61  YMTNDGQLRFYVFVGLFIGVWSYFLLWSVITQRFVVMLIQVTKGLLSFLYKLFRMLLWNP 120


>B1DIG0.1 B1DIG0_9BACL Spore cortex biosynthesis protein YabQ
          Length = 201

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 19/180 (10%)

Query: 4   AVQWVTLFYMMMAGTAMGLAYDSYRVLSLKLSFPKXXXXXXXXXXXXXXXXXVFRMLYAG 63
           ++Q++T+  M+++G  MG+ +D YRV+S +L FP+                 VFR+LYA 
Sbjct: 5   SLQFLTMGMMLLSGIGMGVIFDGYRVVSNELRFPRWTLPVLDMAYWLAASLLVFRVLYAS 64

Query: 64  NQGQLRFYVFVGLFLGVWIYFLIFSVTVRRFVVMLIQSVQYTCR---------------L 108
           N G++R YVF+GL +GV  Y+ + S  V R V  LI +V+   R               L
Sbjct: 65  NYGEVRAYVFLGLLIGVLCYYWLLSKPVIRTVKWLIDAVRALIRFTLRTFDLLIVKPIVL 124

Query: 109 LWRVIEVLIGVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKPIWVFPVRWISPHASRL 168
           L+R+I VLIG                               T+P+W    RW+ P  S L
Sbjct: 125 LYRLIRVLIGFGTALTIFLLKIVLQLVRPFWLLLRFMLGPLTRPLW----RWLGPKLSSL 180


>C0ZHF0.1 C0ZHF0_BREBN Spore cortex formation related protein
          Length = 190

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 6/191 (3%)

Query: 1   MNPAVQWVTLFYMMMAGTAMGLAYDSYRVLSLKLSFPKXXXXXXXXXXXXXXXXXVFRML 60
           MN  +Q  T+  M   G  MG+ +D+Y V   K   P                  VF +L
Sbjct: 1   MNIVIQLQTVLAMSTCGALMGMGFDTYHVFKGKARLPLWLVFFFDILFWVGSMGVVFIVL 60

Query: 61  YAGNQGQLRFYVFVGLFLGVWIYFLIFSVTVRRFVVMLIQSVQYTCRLLWRVIEVLIGVP 120
              N G +RF +F G+  G W+YFL+ S     F+  +I+  Q+  R + ++I++L+  P
Sbjct: 61  VKVNDGIIRFPIFFGMIFGAWLYFLLGSKKYILFLHRVIKFCQWFYRTVVKIIDILLVRP 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKPIWVFPVRWISPHASRLYHSAWVTGF--- 177
                                        T+ +     RW      ++Y     TGF   
Sbjct: 121 VLFLFRVIIMVLTFLYSVLLGILGFLWKVTRFVTSPFARWGQHLGKKMYGKT--TGFWTN 178

Query: 178 -MAWIHTKRKH 187
              W H+KRK 
Sbjct: 179 WKNWFHSKRKR 189


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.335    0.143    0.492 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 866,790,561
Number of extensions: 21527242
Number of successful extensions: 91945
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 91971
Number of HSP's successfully gapped: 5
Length of query: 187
Length of database: 3,060,696,203
Length adjustment: 128
Effective length of query: 59
Effective length of database: 1,854,806,283
Effective search space: 109433570697
Effective search space used: 109433570697
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 127 (53.5 bits)