BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0004.p
         (80 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8Z0.1 B3K8Z0_9BACI Sporulation protein YabP                        103   5e-21
B1DIG1.1 B1DIG1_9BACL Sporulation protein YabP                         84   3e-15
Q5WAE9.1 Q5WAE9_BACSK Putative uncharacterized protein                 83   8e-15
Q9KGI7.1 Q9KGI7_BACHD BH0074 protein                                   77   7e-13
C0ZHE9.1 C0ZHE9_BREBN Putative uncharacterized protein yabP            74   5e-12

>B3K8Z0.1 B3K8Z0_9BACI Sporulation protein YabP
          Length = 93

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 61/80 (76%)

Query: 1  MHSRKQLELTGVQNVESFDSEEFLLRTELGHLTIRGNHLHIKXXXXXXXXXXXXXXVHSL 60
          M +RK L++TGVQNVESFDSEEFLL+TELGHLTIRG +LHIK              VHSL
Sbjct: 14 MQNRKLLDITGVQNVESFDSEEFLLQTELGHLTIRGQNLHIKNLSLEEGLLSIEGQVHSL 73

Query: 61 IYLDPGAQGKNKGILGKLFK 80
          IYL+PG+Q KNK +LGKLFK
Sbjct: 74 IYLNPGSQTKNKSLLGKLFK 93


>B1DIG1.1 B1DIG1_9BACL Sporulation protein YabP
          Length = 94

 Score = 84.3 bits (207), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 51/80 (63%)

Query: 1  MHSRKQLELTGVQNVESFDSEEFLLRTELGHLTIRGNHLHIKXXXXXXXXXXXXXXVHSL 60
          M +RK LE+TGV NVESFDSEEFLL TELG L I+G +LHIK              VHSL
Sbjct: 15 MLNRKLLEITGVLNVESFDSEEFLLDTELGFLMIKGQNLHIKHLNLEQNLVAIEGYVHSL 74

Query: 61 IYLDPGAQGKNKGILGKLFK 80
           YLD     K KG+ GKLFK
Sbjct: 75 AYLDANTSTKTKGLFGKLFK 94


>Q5WAE9.1 Q5WAE9_BACSK Putative uncharacterized protein
          Length = 104

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 54/80 (67%)

Query: 1   MHSRKQLELTGVQNVESFDSEEFLLRTELGHLTIRGNHLHIKXXXXXXXXXXXXXXVHSL 60
           +  RKQL++TGV+ V+SFDSEEFLL T  G+L++RG +LH+K              +H L
Sbjct: 25  LRGRKQLDITGVKQVDSFDSEEFLLETVQGYLSVRGENLHMKNLNVEQGNVSIEGKIHDL 84

Query: 61  IYLDPGAQGKNKGILGKLFK 80
           IY+D   QGK+KG+ GKLFK
Sbjct: 85  IYVDQNQQGKSKGLFGKLFK 104


>Q9KGI7.1 Q9KGI7_BACHD BH0074 protein
          Length = 103

 Score = 76.6 bits (187), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 52/80 (65%)

Query: 1   MHSRKQLELTGVQNVESFDSEEFLLRTELGHLTIRGNHLHIKXXXXXXXXXXXXXXVHSL 60
           M +RK L++TGV+ VESFD+EEFLL TE+G L+IRG +LH+K              +  +
Sbjct: 24  MRNRKTLDITGVKQVESFDNEEFLLETEMGFLSIRGRNLHMKNLNVEEGLVSIEGKIFDM 83

Query: 61  IYLDPGAQGKNKGILGKLFK 80
           +YL+ G   K+KG  GKLFK
Sbjct: 84  VYLEQGQGEKSKGFFGKLFK 103


>C0ZHE9.1 C0ZHE9_BREBN Putative uncharacterized protein yabP
          Length = 94

 Score = 73.6 bits (179), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 1  MHSRKQLELTGVQNVESFDSEEFLLRTELGHLTIRGNHLHIKXXXXXXXXXXXXXXVHSL 60
          M +R+ L ++GV+NVESFDSEEFLL T+ G LTIRG +LH+K              VH +
Sbjct: 14 MINRRSLAISGVKNVESFDSEEFLLETDGGFLTIRGQNLHMKNLSLETGEVAIEGLVHEM 73

Query: 61 IYLDPGAQG-KNKGILGKLFK 80
           YL+ G  G +++G  GKLFK
Sbjct: 74 AYLEQGQAGDRSRGFFGKLFK 94


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.140    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 382,336,148
Number of extensions: 9353674
Number of successful extensions: 11031
Number of sequences better than 1.0e-05: 104
Number of HSP's gapped: 11032
Number of HSP's successfully gapped: 104
Length of query: 80
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 29
Effective length of database: 2,580,224,438
Effective search space: 74826508702
Effective search space used: 74826508702
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)