BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0004.p (396 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K601.1 B3K601_9BACI Putative uncharacterized protein 241 7e-62 B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein 143 3e-32 C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein 103 3e-20 Q2BC58.1 Q2BC58_9BACI Putative uncharacterized protein 79 7e-13 B1HYF9.1 B1HYF9_LYSSC Putative uncharacterized protein 76 6e-12 >B3K601.1 B3K601_9BACI Putative uncharacterized protein Length = 397 Score = 241 bits (616), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 159/406 (39%), Positives = 234/406 (57%), Gaps = 22/406 (5%) Query: 1 MGKWQGRTESRKMEDIRQMVQNHELPVDSFSDLIMKRIGEEGMGKRASAKRGGRFLKKTL 60 MG+ +TE +M + Q ++ LP+ S SD IM RIGE M R S K +K+ + Sbjct: 1 MGQLPEQTEYAEMNALEQRIRESSLPMRSMSDQIMNRIGEREM-TRLSTKPKPNVIKRAI 59 Query: 61 VATSTAAVLGAGIIGSGFVSPVMADTLKQIPIVGNIFKDIEDKGLQAAGEKGLSTAPNQS 120 + S AAVLG +IGSGFVSPVMA TLKQIP++G +++ + ++AA E+G+ + PN S Sbjct: 60 LVASAAAVLGGTVIGSGFVSPVMAATLKQIPVLGVLYEGTSEDAVKAAIEQGILSEPNLS 119 Query: 121 VTHDGVTLKLTDIYYDGTRLALAIEREGIDNDETMAKQIIEP---IAFDPAVKEKKAKVT 177 +THDGVTLK+ D+ YDGTRL+ +EREG+D T + I E I + K KV Sbjct: 120 LTHDGVTLKVADLLYDGTRLSFILEREGVDLPGTASPYISEDATLIGNQDSEYVKSRKVA 179 Query: 178 LDQSVKGLLGSAVLKMP----DGKEVAYGMSMSGDVEGKKNTLLYDFRKLSNTEGYGNEF 233 + KG ++MP DG+EVA G GD + N + + L+ ++F Sbjct: 180 KEDQEKGY-----IEMPRILVDGQEVAMGEGTFGDYPQQDNAYIVE---LAKGLKLPDQF 231 Query: 234 ELSVSIPVTQITEPFEFKVPVKKVTEGIVKLDLNQTKKTQEFSYTIKKLELTPATSRMVV 293 EL++ VTQ+ E FEFK+PV IV TK FSYT+K+L+++P ++R+V+ Sbjct: 232 ELTIQANVTQVNETFEFKIPVNVANPSIVVKPDQATKSDGPFSYTVKQLDISPVSTRLVL 291 Query: 294 NEAGKVPSLPKPISGYNASEMLYDIVGDQSNNVLSQQG--YYYSPVVTTHPIADLDFEPF 351 + G+VP+ + Y+AS + Y++V DQ NVLS + Y++S T + I L + P Sbjct: 292 DSKGEVPASVEQTGDYSASMVYYELVDDQ-GNVLSPRKFEYFHSEPQTEYHIDQL-YSPL 349 Query: 352 PKTPKTITVKPFTHAVD-KDLKPL-KDANGKPVKHYYPELEQTIQI 395 TPK+IT+KPFT V+ KD + +D + K Y +LE TI + Sbjct: 350 NGTPKSITIKPFTLTVNPKDWSVIGQDQDSVGDKTYLKDLEMTIPV 395 >B1HMS9.1 B1HMS9_LYSSC Putative uncharacterized protein Length = 365 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 38/347 (10%) Query: 56 LKKTLVATSTAAVLGAGIIGSGFVSPVMADTLKQIPIVGNIFKDIEDKGLQAAGEKGLST 115 +K L T++ A++ + II +G +SP MA +K++P++ ++FK D GL AA EKGLST Sbjct: 46 VKIYLGVTASVAMIFSLIIVTGLISPTMAAAMKEVPLLSSVFKFTRDLGLHAADEKGLST 105 Query: 116 APNQSVTHDGVTLKLTDIYYDGTRLALAIE---REGIDNDETMAKQIIEPIAFDPAVKEK 172 N SVTH+G TL +T++ YDGTR+A+ IE +EG ++ E+++ Q+ Sbjct: 106 KLNTSVTHEGFTLNVTEVVYDGTRVAIGIEGHHKEGENSKESLSDQM------------- 152 Query: 173 KAKVTLDQSVKGLLGSAVLKMPDGKEVAYGMSMSGDVEGKKNTLLYDFRKLSNTEG--YG 230 +++ L L + V M S D N+ + +F L N G + Sbjct: 153 -------SNIEFSLNGEPLNHTNYSGVY--MQPSKD----NNSAVLEFADLENKNGGIFQ 199 Query: 231 NEFELSVSIPVTQITEPFEFKVPVKKVTEGIVKLDLNQTKKTQEFSYTIKKLELTPATSR 290 +F L++S +T I+EPF+ +PV+ + + L N ++K + +TI+++ LTP T+ Sbjct: 200 KKFNLTLSTTITGISEPFKMDIPVRDIG-NYINLQPNISRKYKNNQFTIEQIILTPITTS 258 Query: 291 MVVNEAGKVPSLPKPISGYNASEMLYDIVGDQSNN--VLSQQGYYYSPVVTTHPIADLDF 348 + ++ L K S + ++ +Q +++ G + + I DL Sbjct: 259 ITT----RIALLDKSTSVDFREGIRIEVYDEQGRELKLINGNGGRETNKGNSDFIMDLRV 314 Query: 349 EPFPKTPKTITVKPFTHAVDKDLKPLKDANGKPVKHYYPELEQTIQI 395 PF PK IT+KP+ H D + D NG P Y PELE TI I Sbjct: 315 HPFETLPKAITIKPYIHLYDFEGSYQLDENGDPKIQYIPELEITIPI 361 >C0ZI66.1 C0ZI66_BREBN Putative uncharacterized protein Length = 368 Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 124/250 (49%), Gaps = 17/250 (6%) Query: 48 SAKRGGRFLKKTLVATSTAAVLGAGIIGSGFVSPVMADTLKQIPIVGNIFKDIE-DKGLQ 106 S +R + L+K + A +LGA + SGF+SPVMA ++KQIP+VG++F IE D GL+ Sbjct: 40 SRERKVQRLRKAPYVAAAAVILGATVFTSGFISPVMAQSIKQIPLVGSLFSFIEADLGLR 99 Query: 107 AAGEKGLSTAPNQSVTHDGVTLKLTDIYYDGTRLALAIEREGIDNDETMAKQIIEPIAFD 166 AAGE+GLS+ N+S++H + L++T+ +DGTR + + + M E + Sbjct: 100 AAGEQGLSSKVNRSISHHDMKLEVTETVFDGTRAVYLLNVTAPNLKDGMFDTGAEVVKLS 159 Query: 167 PAVKEKKAKVTLDQSVKGLLGSAVLKMPDGKEVAYGMSMSGDVEGKKNTLLY-DFRKLSN 225 A++ VT KG D + G E N L++ + K + Sbjct: 160 DAIE----NVTFSIDGKG--------QDDPDSLVTGGFFYSAGESHPNFLVFEEILKTPD 207 Query: 226 TEGYG---NEFELSVSIPVTQITEPFEFKVPVKKVTEGIVKLDLNQTKKTQEFSYTIKKL 282 G + F V + + I + F+ +P +K T ++L N + S+ + ++ Sbjct: 208 HNSTGKIPDSFHAEVVVKLAGIDQAFKLDIPFQKATNNTIQLKPNAIQSNDGISFEVSEV 267 Query: 283 ELTPATSRMV 292 +TP T+R++ Sbjct: 268 NVTPVTTRLL 277 >Q2BC58.1 Q2BC58_9BACI Putative uncharacterized protein Length = 436 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 52/344 (15%) Query: 25 LPVDSFSDLIMKRIGEEGMGKRASAKRGGRFLKKTLVATSTAAVLGAGIIGSGFVSPVMA 84 +P D +I K + E + G +K TS AA A IGS SP +A Sbjct: 17 VPEDELDQIISKAVRE--------TRIKGTLRRKAFYTTSAAAAGFALFIGSAIYSPAIA 68 Query: 85 DTLKQIPIVGNIFKDIEDKGLQAAGEKGLSTAPNQSVTHDGVTLKLTDIYYDGTRLALAI 144 +IP+VG F D+GL+ AG KGL+ +S T G+TL + +++YDGTRLA Sbjct: 69 KIASEIPVVGTFFSGSGDEGLEIAGAKGLTQVVGKSATDKGITLTINEVFYDGTRLAFGF 128 Query: 145 EREGIDNDETMAKQIIEPIAFDPAVKEKKAKVTLDQSVKGLLGSAVLKMPDGKEVAYGMS 204 E + M + PA+ DG E+ + Sbjct: 129 THESLLAIGEMER---------PAI-----------------------YVDGNEINFSSG 156 Query: 205 MSGD-VEGKKNTLLYDFRKLSNTEGYGNEFELSVSI-PVTQITEPFEFKVPVKKVTEGIV 262 SG+ V K + D ++ TE EF + + V + +EF+ PVK+ E + Sbjct: 157 SSGEFVTPAKYQGILD---INPTEELPEEFTMKFRVDAVGLMPGKWEFEFPVKQSGE-VT 212 Query: 263 KLDLNQTKKTQEFSYTIKKLELTPATSRMVVNEAGKVPSLPKPISGYNASEMLYDIVGDQ 322 + +TK Q + +++ PA + + V+ + + Y +++ ++IV +Q Sbjct: 213 VIRPKETKNIQGMEVNVNSVKIGPAGTDLSVSLTADLEQ--TKLDPY--TDLHFNIVDNQ 268 Query: 323 SNNVLSQQGYYYSPVVTTHPIADLD--FEPFPKTPKTITVKPFT 364 + G + V A L + P + K++++ P+T Sbjct: 269 GLALRQMSGSGHGDTVDGKEEATLSMLYSPVKEGTKSLSIIPYT 312 >B1HYF9.1 B1HYF9_LYSSC Putative uncharacterized protein Length = 353 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 94/377 (24%), Positives = 170/377 (45%), Gaps = 69/377 (18%) Query: 12 KMEDIRQMVQNHELPVDSFSDLIMKRIGEEGMGKRASAKRGGRFLK-KTLVATSTAAVLG 70 K+ ++ + N +P+D +I K I E + +RG + L+ K + + S+ AV Sbjct: 4 KIPSFKEGIDNIHVPLDKLDTIISKTIHE-------NVQRGKKSLRIKIVYSLSSVAVAS 56 Query: 71 AGIIGSGFVSPVMADTLKQIPIVGNIFKDIEDKGLQAAGEKGLSTAPNQSVTHDGVTLKL 130 I S SPVMA+ + +IPI+G +F D D GL+ E+GL+ + G ++ L Sbjct: 57 ILFISSTTFSPVMANIVSKIPIIGAVFSDSGDPGLEKVNEQGLTNLIADTKNTGGTSITL 116 Query: 131 TDIYYDGTR--LALAIEREGIDNDETMAK--QI-IEPIAFDPAVKEKKAKVTLDQSVKGL 185 +++YDGTR + +I E + + ++ +I I+ AF A + K++ G+ Sbjct: 117 DEVFYDGTRFTIGFSITSEKVIEESYLSSGPEIKIKGQAFSNASTYSETKISPTHRT-GI 175 Query: 186 LGSAVLKMPDGKEV-AYGMSMSGDVEGKKNTLLYDFRKLSNTEGYGNEFELSVSIPVTQI 244 + + + D E G++ +G V+GK+ +DF S PV+ Sbjct: 176 I--TIDSLDDLSEAFTLGVNFTG-VDGKQ----WDF-----------------STPVSMK 211 Query: 245 TEPFEFKVPVKKVTEGIVKLDLNQTKKTQEFSYTIKKLELTPATSRMVVN-EAGKVPSLP 303 TE V+ VT +N ++ ++ + T+ LE++ A R N + K+ L Sbjct: 212 TE-------VEYVT-------INHSQTVKDINLTVSNLEISAAGLRFNFNADTEKINYLT 257 Query: 304 KPISGYNASEMLYDIVGDQSNNVLSQQGYYYSPVVTTHP--IADLDFEPFPKTPKTITVK 361 +GY + + ++ D+ N ++S G V L +P KT+TV Sbjct: 258 ---NGY----LDFKVIDDKGNELISHSGGSQIQNVDAKEELTGSLLIDPITDNAKTLTVI 310 Query: 362 PFTH------AVDKDLK 372 P+ + +V+ DLK Sbjct: 311 PYVNFHQGGTSVEVDLK 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,392,953,357 Number of extensions: 105292744 Number of successful extensions: 219694 Number of sequences better than 1.0e-05: 21 Number of HSP's gapped: 219697 Number of HSP's successfully gapped: 21 Length of query: 396 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 258 Effective length of database: 1,760,596,133 Effective search space: 454233802314 Effective search space used: 454233802314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)