BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0010.p (296 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8T6.1 B3K8T6_9BACI 6-phosphogluconate dehydrogenase, decarbox... 425 e-117 C0ZD51.1 C0ZD51_BREBN 6-phosphogluconate dehydrogenase EC=1.1.1.44 424 e-117 A6CP55.1 A6CP55_9BACI 6-phosphogluconate dehydrogenase, decarbox... 416 e-114 Q2BA63.1 Q2BA63_9BACI 6-phosphogluconate dehydrogenase EC=1.1.1.44 409 e-112 C3ILT9.1 C3ILT9_BACTU Putative uncharacterized protein 406 e-111 >B3K8T6.1 B3K8T6_9BACI 6-phosphogluconate dehydrogenase, decarboxylating Length = 299 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/295 (70%), Positives = 251/295 (85%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 MIGLGKMG NL NL++H H +V D+N + Q AE GA A+S E +V KL+ PRI+W Sbjct: 5 MIGLGKMGLNLVQNLIHHQHQVVAYDLNTELVAQAAECGAEAAASTELLVAKLDKPRIVW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 +MVPAG++V VI++L LLE+GDI+IDGGNSHYK+SI R+ +L E+GI+ FDAGTSGG Sbjct: 65 MMVPAGKVVDSVIESLTPLLESGDILIDGGNSHYKDSIARAARLAEQGIHYFDAGTSGGM 124 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA +G CFM+GG+ +VF+ IEPLF+D+AVE GYLY+GESGSGHFLKMVHNGIEYGMMQS Sbjct: 125 EGAHNGGCFMIGGNRDVFSGIEPLFKDMAVENGYLYAGESGSGHFLKMVHNGIEYGMMQS 184 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 IAEGFE+LEKS+FD+NYE+VA++WS GSVIR WLMEL QNAF+KDPKL GI+GVM SSGE Sbjct: 185 IAEGFEVLEKSAFDFNYEDVARVWSKGSVIRSWLMELTQNAFSKDPKLEGIKGVMKSSGE 244 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAVVQGE 295 GKWTV+TAL+++ S PVIA+SL MRYRSL+ DTFHGKVVAALRNEFGGHAV + E Sbjct: 245 GKWTVETALEVQASAPVIAMSLFMRYRSLDQDTFHGKVVAALRNEFGGHAVEKSE 299 >C0ZD51.1 C0ZD51_BREBN 6-phosphogluconate dehydrogenase EC=1.1.1.44 Length = 298 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 193/291 (66%), Positives = 244/291 (83%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 ++GLGKMGYNL LNLL+H H++V D++ R +L+ GA+PA S+ED + KL PR++W Sbjct: 5 ILGLGKMGYNLTLNLLSHQHEVVAYDVDSTRAEELSHEGAIPAFSVEDAMEKLPTPRVVW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 +MVPAGEIV ++D L+ LL GDI+IDGGNSHYK+S+ R +L+E+GI+ DAGTSGG Sbjct: 65 LMVPAGEIVDQLVDQLSTLLAVGDIVIDGGNSHYKQSLDRYARLKEKGIHFMDAGTSGGM 124 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA HGAC M+GGD E F+ IEP+ RD+ VE GYLY+GE+GSGHFLKM+HNGIEYGMMQ+ Sbjct: 125 EGARHGACMMIGGDREAFSHIEPMIRDINVENGYLYAGEAGSGHFLKMIHNGIEYGMMQA 184 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 I EGFE+L KS +++++ VA++W+NGSVIRGWLM+L + AF KD KL IRGVMHSSGE Sbjct: 185 IGEGFEVLAKSQYNFDFAEVARVWANGSVIRGWLMDLTERAFRKDAKLDEIRGVMHSSGE 244 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAV 291 GKWT++TALDL+ +TPVIA+SLLMRYRSL++DTFHGKVVAALRNEFGGHAV Sbjct: 245 GKWTLETALDLQAATPVIAMSLLMRYRSLDEDTFHGKVVAALRNEFGGHAV 295 >A6CP55.1 A6CP55_9BACI 6-phosphogluconate dehydrogenase, decarboxylating EC=1.1.1.44 Length = 300 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 193/296 (65%), Positives = 241/296 (81%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 MIGLGKMGY L+LNL +H H +V D+N +++ G A+S+E++V+KLE PR +W Sbjct: 5 MIGLGKMGYQLSLNLTDHKHQVVAFDLNKDAMKKISAEGVGTAASIEELVSKLEKPRTVW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 +MVPAG+ V + LE GD IIDGGN+HYK+S+ R + E+G+YLFD GTSGG Sbjct: 65 MMVPAGDATESVFQQVLPHLEEGDRIIDGGNAHYKDSLRRDEQAAEKGVYLFDCGTSGGV 124 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 +GA HGAC M+GG+AEVF IE +F D++VE GYLY+G++GSGHFLKMVHNG+EYGMMQ+ Sbjct: 125 DGARHGACTMIGGNAEVFKEIEQIFSDISVENGYLYTGKAGSGHFLKMVHNGVEYGMMQA 184 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 IAEGF++LEKS FDY YE VA++W+NGSVIR WLMEL +NAF+KD KL GI+GVMHSSGE Sbjct: 185 IAEGFDILEKSPFDYEYEKVARVWNNGSVIRSWLMELTENAFSKDEKLEGIKGVMHSSGE 244 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAVVQGEQ 296 GKWTV+TALDL+T+ PVIALSL+MRYRSLEDDTF GKVVAALRNEFGGHAV + ++ Sbjct: 245 GKWTVETALDLQTAAPVIALSLMMRYRSLEDDTFTGKVVAALRNEFGGHAVEKSDK 300 >Q2BA63.1 Q2BA63_9BACI 6-phosphogluconate dehydrogenase EC=1.1.1.44 Length = 300 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 187/293 (63%), Positives = 238/293 (81%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLGKMGYNLALN+ + GH++V +D+N + +++ G A+S+E++ KL P+++W Sbjct: 5 IIGLGKMGYNLALNMRDKGHEVVANDVNTEAMEKISAEGVATAASIEELAAKLPSPKVIW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 +MVPAG+I V+ + A +L GDIIIDGGNS+YKE++ R +L E+GI+ D GTSGG Sbjct: 65 MMVPAGDITEKVLSSAAAVLTEGDIIIDGGNSNYKETLRRGDELAEKGIHYIDCGTSGGQ 124 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA HG C M+GGD E F+ +E LF D++V GYLYSG+ GSGHFLKMVHNGIEYGMMQ+ Sbjct: 125 EGARHGVCTMIGGDKEAFSQVEQLFADISVPNGYLYSGKRGSGHFLKMVHNGIEYGMMQA 184 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 AEGFE+LEKS+FDY+Y+ V+++W+NGSVIR WL EL +NAF+KDPKL GIRGVM+SSGE Sbjct: 185 FAEGFEILEKSNFDYDYKEVSRVWNNGSVIRSWLSELLENAFSKDPKLEGIRGVMNSSGE 244 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAVVQ 293 GKWTV+ ALD + S PVIA+S MRYRSLEDDTFHGKVVAALRNEFGGHAVV+ Sbjct: 245 GKWTVEAALDFQASAPVIAMSQFMRYRSLEDDTFHGKVVAALRNEFGGHAVVK 297 >C3ILT9.1 C3ILT9_BACTU Putative uncharacterized protein Length = 297 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 192/291 (65%), Positives = 237/291 (81%), Gaps = 1/291 (0%) Query: 1 MIGLGKMGYNLALNLLNHGHDLVVSDINPQRGLQLAERGALPASSLEDMVTKLEHPRILW 60 +IGLGKMG NL NL++H H++V D+N ++ E GA SSL ++V L+ PRILW Sbjct: 5 LIGLGKMGLNLGKNLMDHKHEVVAFDLNTSAVEEMKEYGATGTSSLSELVQSLQSPRILW 64 Query: 61 VMVPAGEIVTGVIDTLAGLLEAGDIIIDGGNSHYKESIVRSGKLRERGIYLFDAGTSGGT 120 VMVP +V VID + LL GDI+ID GNSHYKESI R +L++ GI+ DAGTSGG Sbjct: 65 VMVPHA-VVDSVIDEVTPLLSKGDILIDAGNSHYKESIRRYEQLKKDGIHFMDAGTSGGM 123 Query: 121 EGAEHGACFMVGGDAEVFTVIEPLFRDLAVERGYLYSGESGSGHFLKMVHNGIEYGMMQS 180 EGA +GAC+M+GGD E + ++EP+FRD AVE G+LY+G++GSGHFLKMVHNGIEYGMM + Sbjct: 124 EGARNGACYMIGGDQEAWDIVEPIFRDTAVENGFLYAGKAGSGHFLKMVHNGIEYGMMAA 183 Query: 181 IAEGFELLEKSSFDYNYENVAQLWSNGSVIRGWLMELAQNAFAKDPKLSGIRGVMHSSGE 240 I EGFE+LEKS FDY+YE V+++W+NGSVIR WLMEL +NAF+KD KL I+GVMHSSGE Sbjct: 184 IGEGFEILEKSEFDYDYEKVSRVWNNGSVIRSWLMELTENAFSKDAKLDEIKGVMHSSGE 243 Query: 241 GKWTVQTALDLETSTPVIALSLLMRYRSLEDDTFHGKVVAALRNEFGGHAV 291 GKWTV+TALDL+T+TPVIA+SLLMRYRSL++DTF GKVVAALRNEFGGHAV Sbjct: 244 GKWTVETALDLQTATPVIAMSLLMRYRSLDNDTFTGKVVAALRNEFGGHAV 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,866,362,144 Number of extensions: 79812305 Number of successful extensions: 228418 Number of sequences better than 1.0e-05: 3422 Number of HSP's gapped: 222964 Number of HSP's successfully gapped: 3432 Length of query: 296 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 161 Effective length of database: 1,788,859,178 Effective search space: 288006327658 Effective search space used: 288006327658 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)