BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0007.p (514 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8T9.1 B3K8T9_9BACI Gluconate kinase 801 0.0 Q2BA58.1 Q2BA58_9BACI Gluconate kinase (2-dehydro-3-deoxyglucono... 731 0.0 Q6HG42.1 Q6HG42_BACHK Gluconate kinase (2-dehydro-3-deoxyglucono... 729 0.0 A0RGG3.1 A0RGG3_BACAH Gluconate kinase (2-dehydro-3-deoxyglucono... 729 0.0 C2TJ66.1 C2TJ66_BACCE Gluconokinase 729 0.0 >B3K8T9.1 B3K8T9_9BACI Gluconate kinase Length = 515 Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/506 (74%), Positives = 433/506 (85%) Query: 4 SYMIGVDIGTTSTKAVLFEENGRITAQANQGYPLHTPSPSVAEQDPEQILSAVFHTISTV 63 +YM+GVDIGTTSTKAVLF+ENG + A+A YPL TP+PS AEQDPEQI V ++ V Sbjct: 5 NYMMGVDIGTTSTKAVLFKENGEVVAKAGGEYPLLTPTPSTAEQDPEQIFQTVIASVQGV 64 Query: 64 MKDSAVRPDSVLFLSFSSAMHSVIAVDRTGNPLTPCITWADNRSAGCAARLRDELGGHAL 123 M S + P VLF+SFS+AMHSVIAVD G PLT CITWADNRSA +A+L+ ELGG L Sbjct: 65 MTQSGIDPAQVLFVSFSAAMHSVIAVDSQGTPLTRCITWADNRSAAWSAKLKKELGGMEL 124 Query: 124 YLRTGTPIHPMSPLTKLMWLGEEQPDLFRQTFKFISIKEYIFAKLFGEYVIDYSIASSTG 183 YLRTGTPIHPMSP+TKLMW+ E P LF Q KFISIKEY++ KLFG+YV+D+SIASSTG Sbjct: 125 YLRTGTPIHPMSPVTKLMWMRHELPSLFSQAAKFISIKEYVYFKLFGQYVVDHSIASSTG 184 Query: 184 MFNLQQLGWDEEALHIAGITAERLSKPVPTTRIMQGLLPGMAERLGLLPSTPFIVGATDG 243 M NL+ L WD +AL +AGIT + LS VPTT IM+GL A +GL STPF++GA DG Sbjct: 185 MMNLEALAWDPQALELAGITEDHLSTIVPTTHIMEGLKSEYAAAMGLSVSTPFVLGAADG 244 Query: 244 VLSNLGVGAIKPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKHWVIGGPVNNGG 303 VLSNLGV AI+PGVVAATIGTSGAIRTVVD+P+TDPKGRIFCYALTEKHWVIGG VNNGG Sbjct: 245 VLSNLGVNAIQPGVVAATIGTSGAIRTVVDKPMTDPKGRIFCYALTEKHWVIGGAVNNGG 304 Query: 304 LLFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLWNPD 363 ++FRWVRDEFAASE+ETAKRLGI+PY+VLT+IA+++PPGSNGLLFHPYLTGERAPLW+P+ Sbjct: 305 MIFRWVRDEFAASEIETAKRLGINPYDVLTKIADRIPPGSNGLLFHPYLTGERAPLWDPN 364 Query: 364 ARGSFFGLTMNHHKEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARSSLWRQ 423 ARGSFFGLT+NH KEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARS +WRQ Sbjct: 365 ARGSFFGLTLNHKKEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARSPIWRQ 424 Query: 424 MMADIFDQEVVIPESFESSCLGAVVLGLYATGRTDSFDIVFSMIGSTHQHQPVKEHARVY 483 MMADIFDQ+V++PES+ESSCLGAVVLGLYATGR +S DIV +M+G TH+HQPVKE A +Y Sbjct: 425 MMADIFDQQVIVPESYESSCLGAVVLGLYATGRVESLDIVETMVGGTHEHQPVKESADIY 484 Query: 484 KQLLPIYISLFRSLESQYQAIAEFQR 509 K LLPI+I + R LE Y+AI EFQR Sbjct: 485 KALLPIFIRISRKLEEDYEAITEFQR 510 >Q2BA58.1 Q2BA58_9BACI Gluconate kinase (2-dehydro-3-deoxygluconokinase) Length = 514 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/509 (66%), Positives = 414/509 (81%) Query: 5 YMIGVDIGTTSTKAVLFEENGRITAQANQGYPLHTPSPSVAEQDPEQILSAVFHTISTVM 64 YM+GVDIGTTSTK+VLF + G++ A+ + GYPLHTPSPS AEQDP+ IL+AV T+ M Sbjct: 6 YMLGVDIGTTSTKSVLFNKEGKVAAKHSIGYPLHTPSPSAAEQDPDIILAAVAGTLKACM 65 Query: 65 KDSAVRPDSVLFLSFSSAMHSVIAVDRTGNPLTPCITWADNRSAGCAARLRDELGGHALY 124 ++ + +L +SFSSAMHS+IAVD G PLT ITWADNRSAG A +++ L GH +Y Sbjct: 66 EEGGISSADLLCVSFSSAMHSLIAVDGDGIPLTKSITWADNRSAGWAEKIKRNLNGHEIY 125 Query: 125 LRTGTPIHPMSPLTKLMWLGEEQPDLFRQTFKFISIKEYIFAKLFGEYVIDYSIASSTGM 184 LRTGTPIHPMSPL+KL+W+ E+ +++ Q KFISIKEY+F K FGEY++DYSIAS+TGM Sbjct: 126 LRTGTPIHPMSPLSKLLWMKNEEKEIYNQAAKFISIKEYVFFKFFGEYIVDYSIASATGM 185 Query: 185 FNLQQLGWDEEALHIAGITAERLSKPVPTTRIMQGLLPGMAERLGLLPSTPFIVGATDGV 244 FNL+ L WD EAL +AGI ++LS+PVPTT ++GL + GL S PF+VGA+DGV Sbjct: 186 FNLKDLSWDAEALEVAGIQGDKLSEPVPTTYTLKGLKEEYQKLTGLDASVPFVVGASDGV 245 Query: 245 LSNLGVGAIKPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKHWVIGGPVNNGGL 304 LSNLGV AI PGVVA TIGTSGAIR V DRP+TDPKGRIFCYALTEKHWVIGGPVNNGG+ Sbjct: 246 LSNLGVNAIDPGVVAVTIGTSGAIRAVTDRPVTDPKGRIFCYALTEKHWVIGGPVNNGGM 305 Query: 305 LFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLWNPDA 364 +FRWVRDE AASEVETAKRLG+D Y+VLT+IA V PG++GL+FHPY+TGERAPLWN +A Sbjct: 306 IFRWVRDELAASEVETAKRLGMDAYDVLTKIAAAVRPGADGLIFHPYMTGERAPLWNSNA 365 Query: 365 RGSFFGLTMNHHKEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARSSLWRQM 424 RGSFFGL+++H KEHMIRSVLEGVI+N++TVLLA+EE IG P KI ATGGFARS LWRQM Sbjct: 366 RGSFFGLSLHHKKEHMIRSVLEGVIYNLFTVLLALEELIGEPKKIQATGGFARSELWRQM 425 Query: 425 MADIFDQEVVIPESFESSCLGAVVLGLYATGRTDSFDIVFSMIGSTHQHQPVKEHARVYK 484 MADIF+QEVV+PES+ESSCLGA +LGLYA G + IV M+G T H+P E+A VY+ Sbjct: 426 MADIFNQEVVVPESYESSCLGAAILGLYAVGEIEDLSIVSGMVGDTFSHKPNPENAAVYQ 485 Query: 485 QLLPIYISLFRSLESQYQAIAEFQREQAG 513 +LLP++I L R+LE +Y+ IA FQ++ G Sbjct: 486 ELLPVFIRLSRALEGEYENIARFQKKHLG 514 >Q6HG42.1 Q6HG42_BACHK Gluconate kinase (2-dehydro-3-deoxygluconokinase) EC=2.7.1.12 Length = 513 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/510 (65%), Positives = 409/510 (80%) Query: 1 LGTSYMIGVDIGTTSTKAVLFEENGRITAQANQGYPLHTPSPSVAEQDPEQILSAVFHTI 60 + + YMIGVDIGTTSTK+VLF +G + A YPL++P+P AEQDPE+I AV HTI Sbjct: 2 VSSKYMIGVDIGTTSTKSVLFSTDGSVIASHGIEYPLYSPTPETAEQDPEEIFRAVIHTI 61 Query: 61 STVMKDSAVRPDSVLFLSFSSAMHSVIAVDRTGNPLTPCITWADNRSAGCAARLRDELGG 120 ++ S+V+P +L +SFSSAMHS+IAVD G PLT CITWADNRSA A ++++++ G Sbjct: 62 KETVQTSSVQPHDILCVSFSSAMHSIIAVDEKGKPLTRCITWADNRSASWAEKIKNDMNG 121 Query: 121 HALYLRTGTPIHPMSPLTKLMWLGEEQPDLFRQTFKFISIKEYIFAKLFGEYVIDYSIAS 180 H +YLRTGTPIHPMSPL+KL+WL EQ +LF +T+KFISIKEY+F KL+ EYVIDYSIAS Sbjct: 122 HEIYLRTGTPIHPMSPLSKLVWLQNEQAELFAKTYKFISIKEYVFYKLYKEYVIDYSIAS 181 Query: 181 STGMFNLQQLGWDEEALHIAGITAERLSKPVPTTRIMQGLLPGMAERLGLLPSTPFIVGA 240 +TGMFNL+ L WDEEALH+AGIT ++LSK VPTT + GL +A + +L STPF+VGA Sbjct: 182 ATGMFNLKSLKWDEEALHVAGITDDKLSKLVPTTHSLTGLDEELANEMNVLVSTPFVVGA 241 Query: 241 TDGVLSNLGVGAIKPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKHWVIGGPVN 300 +DGVLSNLGV AI PGVVA TIGTSGAIR V +RP+TDPKGRIFCYALTE HWVIGGPVN Sbjct: 242 SDGVLSNLGVNAIDPGVVAVTIGTSGAIRAVTNRPVTDPKGRIFCYALTEDHWVIGGPVN 301 Query: 301 NGGLLFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLW 360 NGG++FRW RD+ SE+E AKRLG DPYEVLT IA +V PGS+GLLFHPYL GERAPLW Sbjct: 302 NGGMIFRWARDQLGTSEIELAKRLGKDPYEVLTEIAAKVNPGSDGLLFHPYLAGERAPLW 361 Query: 361 NPDARGSFFGLTMNHHKEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARSSL 420 N +ARGSFFGL ++H KEH+IR+VLEGVI+N+YTVLLA++E IG P KI ATGGFARS L Sbjct: 362 NANARGSFFGLGLHHKKEHLIRAVLEGVIYNLYTVLLALKELIGEPKKIQATGGFARSEL 421 Query: 421 WRQMMADIFDQEVVIPESFESSCLGAVVLGLYATGRTDSFDIVFSMIGSTHQHQPVKEHA 480 WRQMMADIF Q+V +PESFESSCLGA +LGLY+ G D+ +V M+G+ H+P E Sbjct: 422 WRQMMADIFHQDVYVPESFESSCLGAAILGLYSLGEVDTLHVVSEMVGANFHHEPNMESV 481 Query: 481 RVYKQLLPIYISLFRSLESQYQAIAEFQRE 510 YK L PIYI L R LE +Y++IA++Q++ Sbjct: 482 EKYKDLTPIYIRLSRQLEEEYESIADYQKK 511 >A0RGG3.1 A0RGG3_BACAH Gluconate kinase (2-dehydro-3-deoxygluconokinase) Length = 513 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/510 (65%), Positives = 409/510 (80%) Query: 1 LGTSYMIGVDIGTTSTKAVLFEENGRITAQANQGYPLHTPSPSVAEQDPEQILSAVFHTI 60 + + YMIGVDIGTTSTK+VLF +G + A YPL++P+P AEQDPE+I AV HTI Sbjct: 2 VSSKYMIGVDIGTTSTKSVLFSTDGSVIASHGIEYPLYSPTPETAEQDPEEIFRAVIHTI 61 Query: 61 STVMKDSAVRPDSVLFLSFSSAMHSVIAVDRTGNPLTPCITWADNRSAGCAARLRDELGG 120 ++ S+V+P +L +SFSSAMHS+IAVD G PLT CITWADNRSA A ++++++ G Sbjct: 62 KETVQTSSVQPHDILCVSFSSAMHSIIAVDEKGKPLTRCITWADNRSASWAEKIKNDMNG 121 Query: 121 HALYLRTGTPIHPMSPLTKLMWLGEEQPDLFRQTFKFISIKEYIFAKLFGEYVIDYSIAS 180 H +YLRTGTPIHPMSPL+KL+WL EQ +LF +T+KFISIKEY+F KL+ EYVIDYSIAS Sbjct: 122 HEIYLRTGTPIHPMSPLSKLVWLQNEQAELFAKTYKFISIKEYVFYKLYKEYVIDYSIAS 181 Query: 181 STGMFNLQQLGWDEEALHIAGITAERLSKPVPTTRIMQGLLPGMAERLGLLPSTPFIVGA 240 +TGMFNL+ L WDEEALH+AGIT ++LSK VPTT + GL +A + +L STPF+VGA Sbjct: 182 ATGMFNLKSLKWDEEALHVAGITDDKLSKLVPTTHSLTGLDEELANEMNVLVSTPFVVGA 241 Query: 241 TDGVLSNLGVGAIKPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKHWVIGGPVN 300 +DGVLSNLGV AI PGVVA TIGTSGAIR V +RP+TDPKGRIFCYALTE HWVIGGPVN Sbjct: 242 SDGVLSNLGVNAIDPGVVAVTIGTSGAIRAVTNRPVTDPKGRIFCYALTEDHWVIGGPVN 301 Query: 301 NGGLLFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLW 360 NGG++FRW RD+ SE+E AKRLG DPYEVLT IA +V PGS+GLLFHPYL GERAPLW Sbjct: 302 NGGMIFRWARDQLGTSEIELAKRLGKDPYEVLTEIAAKVNPGSDGLLFHPYLAGERAPLW 361 Query: 361 NPDARGSFFGLTMNHHKEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARSSL 420 N +ARGSFFGL ++H KEH+IR+VLEGVI+N+YTVLLA++E IG P KI ATGGFARS L Sbjct: 362 NANARGSFFGLGLHHKKEHLIRAVLEGVIYNLYTVLLALKELIGEPKKIQATGGFARSEL 421 Query: 421 WRQMMADIFDQEVVIPESFESSCLGAVVLGLYATGRTDSFDIVFSMIGSTHQHQPVKEHA 480 WRQMMADIF Q+V +PESFESSCLGA +LGLY+ G D+ +V M+G+ H+P E Sbjct: 422 WRQMMADIFHQDVYVPESFESSCLGAAILGLYSLGEVDTLHVVSEMVGANFHHEPNMESV 481 Query: 481 RVYKQLLPIYISLFRSLESQYQAIAEFQRE 510 YK L PIYI L R LE +Y++IA++Q++ Sbjct: 482 EKYKDLTPIYIRLSRQLEEEYESIADYQKK 511 >C2TJ66.1 C2TJ66_BACCE Gluconokinase Length = 513 Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/510 (65%), Positives = 409/510 (80%) Query: 1 LGTSYMIGVDIGTTSTKAVLFEENGRITAQANQGYPLHTPSPSVAEQDPEQILSAVFHTI 60 + + YMIGVDIGTTSTK+VLF +G + A YPL++P+P AEQDPE+I AV HTI Sbjct: 2 VSSKYMIGVDIGTTSTKSVLFSTDGSVIASHGIEYPLYSPTPETAEQDPEEIFRAVIHTI 61 Query: 61 STVMKDSAVRPDSVLFLSFSSAMHSVIAVDRTGNPLTPCITWADNRSAGCAARLRDELGG 120 ++ S+V+P +L +SFSSAMHS+IAVD G PLT CITWADNRSA A ++++++ G Sbjct: 62 KETVQTSSVQPHDILCVSFSSAMHSIIAVDEKGKPLTRCITWADNRSASWAEKIKNDMNG 121 Query: 121 HALYLRTGTPIHPMSPLTKLMWLGEEQPDLFRQTFKFISIKEYIFAKLFGEYVIDYSIAS 180 H +YLRTGTPIHPMSPL+KL+WL EQ +LF +T+KFISIKEY+F KL+ EYVIDYSIAS Sbjct: 122 HEIYLRTGTPIHPMSPLSKLVWLQNEQAELFAKTYKFISIKEYVFYKLYKEYVIDYSIAS 181 Query: 181 STGMFNLQQLGWDEEALHIAGITAERLSKPVPTTRIMQGLLPGMAERLGLLPSTPFIVGA 240 +TGMFNL+ L WDEEALH+AGIT ++LSK VPTT + GL +A + +L STPF+VGA Sbjct: 182 ATGMFNLKSLKWDEEALHVAGITDDKLSKLVPTTHSLTGLDEELANEMNVLVSTPFVVGA 241 Query: 241 TDGVLSNLGVGAIKPGVVAATIGTSGAIRTVVDRPLTDPKGRIFCYALTEKHWVIGGPVN 300 +DGVLSNLGV AI PGVVA TIGTSGAIR V +RP+TDPKGRIFCYALTE HWVIGGPVN Sbjct: 242 SDGVLSNLGVNAIDPGVVAVTIGTSGAIRAVTNRPVTDPKGRIFCYALTEDHWVIGGPVN 301 Query: 301 NGGLLFRWVRDEFAASEVETAKRLGIDPYEVLTRIAEQVPPGSNGLLFHPYLTGERAPLW 360 NGG++FRW RD+ SE+E AKRLG DPYEVLT IA +V PGS+GLLFHPYL GERAPLW Sbjct: 302 NGGMIFRWARDQLGTSEIELAKRLGKDPYEVLTEIAAKVNPGSDGLLFHPYLAGERAPLW 361 Query: 361 NPDARGSFFGLTMNHHKEHMIRSVLEGVIFNMYTVLLAMEEQIGRPAKIHATGGFARSSL 420 N +ARGSFFGL ++H KEH+IR+VLEGVI+N+YTVLLA++E IG P KI ATGGFARS L Sbjct: 362 NANARGSFFGLGLHHKKEHLIRAVLEGVIYNLYTVLLALKELIGEPKKIQATGGFARSEL 421 Query: 421 WRQMMADIFDQEVVIPESFESSCLGAVVLGLYATGRTDSFDIVFSMIGSTHQHQPVKEHA 480 WRQMMADIF Q+V +PESFESSCLGA +LGLY+ G D+ +V M+G+ H+P E Sbjct: 422 WRQMMADIFHQDVYVPESFESSCLGAAILGLYSLGEVDTLHVVSEMVGANFHHEPNMESV 481 Query: 481 RVYKQLLPIYISLFRSLESQYQAIAEFQRE 510 YK L PIYI L R LE +Y++IA++Q++ Sbjct: 482 EKYKDLTPIYIRLSRQLEEEYESIADYQKK 511 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,138,727,988 Number of extensions: 135379802 Number of successful extensions: 337915 Number of sequences better than 1.0e-05: 4185 Number of HSP's gapped: 324677 Number of HSP's successfully gapped: 4273 Length of query: 514 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 374 Effective length of database: 1,741,754,103 Effective search space: 651416034522 Effective search space used: 651416034522 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)