BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0006.p (383 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9F0.1 B3K9F0_9BACI Acyltransferase 3 290 2e-76 B1D5R8.1 B1D5R8_9BACL Acyltransferase 3 279 4e-73 B1D5R6.1 B1D5R6_9BACL Putative uncharacterized protein 268 5e-70 A3I592.1 A3I592_9BACI Acyltransferase 3 239 3e-61 B3K342.1 B3K342_9BACI Putative uncharacterized protein 238 6e-61 >B3K9F0.1 B3K9F0_9BACI Acyltransferase 3 Length = 394 Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 164/387 (42%), Positives = 229/387 (59%), Gaps = 13/387 (3%) Query: 4 KERIPQLDXXXXXXXXXXXXXXXTSRTLAETLDTSMFHPFLFINKFSQFAVPSFVFLSGF 63 +ER+P+L TS ++ D+ F + F+N F ++ P+F+FLS Sbjct: 9 RERLPELQLVRAFAIIGVLSVHSTSYAVSAMTDSKYFFIYNFMNIFMKYGTPTFIFLSSL 68 Query: 64 VLFYNYIDRPLTGKTLGKFYSRRLIYIIVPYVVFSLMYFILKMTAGHTWNLPLDEMAHKL 123 VLFYNY DRP T K +G FY +RL+YII+PY +FS+ YF L + H P E Sbjct: 69 VLFYNYYDRPTTKKLIGGFYKKRLLYIIIPYTLFSVFYFGL-LHYLHYQGRPFGETMESF 127 Query: 124 GKYLLTGTAYTHLYYIIIIIQFYVLFPLMLWCLQKVRRLAAWAPLIGLLLQWGFVLLNKY 183 + LLTG AYTHLY++ I IQFYVLFPL+LW +K+ +LA WA IGL++QW F+L+NKY Sbjct: 128 IQKLLTGKAYTHLYFVFISIQFYVLFPLVLWLFKKMPQLAKWAIPIGLVIQWTFILMNKY 187 Query: 184 MTNHGYWHL-SKGSLSITYFSYFLLGAAIAVYYGTLKRWLILSREGWLSGKGPGWIVLWV 242 YW + +KGS +++Y +YF+LGA I +YY LK WL++SR + W +LW+ Sbjct: 188 -----YWQVPNKGSWALSYIAYFMLGAFIGIYYPKLKAWLVISRSNAQPYRIAAWTMLWI 242 Query: 243 LWAAAGIIHVELWFNSYTKKTVINSLWYEGFSNLHALLSCIVLLQLSFLLYGTGRRVLSR 302 WAAAG+ HV +++N+ T NS YE N+H +VLLQ + L Y G R + Sbjct: 243 AWAAAGLGHVYIYYNNRLHGTGYNSTLYELLWNMHTYFGALVLLQFAILFYRAGVRGWTP 302 Query: 303 MLISIGACSFGIYLLHPALLFLYRKLPFHGGSLAYTAA-IAGGWLVALLGSWLVVAVVFR 361 L +GA SFGIYL+HP L +YR+ P G+ T AGG+ AL SW+VV + R Sbjct: 303 ALERLGAVSFGIYLIHPFFLLVYRQFPLTTGNSILTHLWYAGGFAAALGCSWIVVELTVR 362 Query: 362 YVKPAWVVFGSGPH-----KPQKKAAL 383 Y+ +WV+FG+ P KP A+ Sbjct: 363 YIPGSWVIFGNIPKAKRSGKPTDTPAV 389 >B1D5R8.1 B1D5R8_9BACL Acyltransferase 3 Length = 396 Score = 279 bits (713), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 151/384 (39%), Positives = 224/384 (58%), Gaps = 13/384 (3%) Query: 1 MGQKERIPQLDXXXXXXXXXXXXXXXTSRTLAETLDTSMFHPFLFINKFSQFAVPSFVFL 60 + ++++IP+L TS +++ F + F N F + +F+FL Sbjct: 8 LQKRDKIPELSLVRAMAITGVLSVHSTSFATIAMINSKYFFLYNFFNIFMKIGTTTFIFL 67 Query: 61 SGFVLFYNYIDRPLTGKTLGKFYSRRLIYIIVPYVVFSLMYFILKMTAGHTWNLPLDEMA 120 S FVLFYNY RPL + LG FY +RL+YII+PY+VFSL YF + + + + L Sbjct: 68 SSFVLFYNYYSRPLDKQLLGSFYKKRLLYIIIPYLVFSLFYFTI-LHFLYYPDRSLSNEI 126 Query: 121 HKLGKYLLTGTAYTHLYYIIIIIQFYVLFPLMLWCLQKVRRLAAWAPLIGLLLQWGFVLL 180 H+ + +LTG+AYTHLY++ I IQFY++FPL LW L+K R+ WA G LQWGF LL Sbjct: 127 HRFIEKVLTGSAYTHLYFVFINIQFYLMFPLFLWLLKKYPRMVKWAIPAGFALQWGFFLL 186 Query: 181 NKY-----MTNHGYWHLSKGSLSITYFSYFLLGAAIAVYYGTLKRWLILSREGWLSGKGP 235 NKY + N G W S +YFSY+LLGAA+ +YY +K W+I ++E + + Sbjct: 187 NKYGLPAPVPNRGSW-------SFSYFSYYLLGAALGIYYPKVKEWIIAAKENATAVRVT 239 Query: 236 GWIVLWVLWAAAGIIHVELWFNSYTKKTVINSLWYEGFSNLHALLSCIVLLQLSFLLYGT 295 W++LW W AG+ HV L+ + +K NS ++ N+H +L+ +VLLQL+F+L Sbjct: 240 AWVILWACWIVAGLTHVYLYHETRLQKQSFNSTLFDLVWNIHGILTALVLLQLAFILTRK 299 Query: 296 GRRVLSRMLISIGACSFGIYLLHPALLFLYRKLPFHGGSLAYTAAIAGGWLVALLGSWLV 355 + ++R++ +G+ SFGIYL+HP L +YR+ P H + GG+ +AL GSW V Sbjct: 300 LPKAINRLIARLGSLSFGIYLIHPFFLLVYREFPPHAEAWMLHLWYLGGFALALAGSWFV 359 Query: 356 VAVVFRYVKPAWVVFGSGPHKPQK 379 V RYV W+ FG+ P K Q+ Sbjct: 360 VGFFARYVPFNWIAFGNLPKKQQQ 383 >B1D5R6.1 B1D5R6_9BACL Putative uncharacterized protein Length = 398 Score = 268 bits (686), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 154/388 (39%), Positives = 230/388 (59%), Gaps = 14/388 (3%) Query: 1 MGQKERIPQLDXXXXXXXXXXXXXXXTSRTLAETLDTSMFHPFLFINKFSQFAVPSFVFL 60 + +++ IPQL TS +D++ F + F N F + +F+FL Sbjct: 8 LQKRDNIPQLLLVRAMAIIGVLSVHSTSFATVTMVDSNYFFLYNFFNIFMKIGTTTFIFL 67 Query: 61 SGFVLFYNYIDRPLTGKTLGKFYSRRLIYIIVPYVVFSLMYFILKMTAGHTWNLP---LD 117 S FVLFYNY RPL + LG FY +RL+YII+PY+VFSL YF T H P L Sbjct: 68 SSFVLFYNYYTRPLDKQLLGSFYKKRLLYIIIPYLVFSLFYF----TVLHYLYYPDRSLS 123 Query: 118 EMAHKLGKYLLTGTAYTHLYYIIIIIQFYVLFPLMLWCLQKVRRLAAWAPLIGLLLQWGF 177 H +LTG AYTHLY++ I IQFY++FPL LW ++K R WA G+ +QW F Sbjct: 124 TEIHNFIDKVLTGKAYTHLYFVYINIQFYLMFPLFLWLMKKYPRTVKWAIPAGIAIQWAF 183 Query: 178 VLLNKY-MTNHGYWHLSKGSLSITYFSYFLLGAAIAVYYGTLKRWLILSREGWLSGKGPG 236 ++NK+ + G ++GS S +YFSY+LLGAA+ +YY +K W+I++R+ + + Sbjct: 184 FIINKHVLPAPGV--PNRGSWSFSYFSYYLLGAALGIYYPKIKEWIIIARKHATNARVVT 241 Query: 237 WIVLWVLWAAAGIIHVELWFNSYTKKTVINSLWYEGFSNLHALLSCIVLLQLSFLLYGTG 296 W LW LW AAG+ HV L++ + N+ ++ N+H +L+ +VLLQ+SF+L Sbjct: 242 WFALWALWIAAGLAHVYLYYETRLHLKSFNTTLFDLVWNIHGVLTALVLLQISFILSKKL 301 Query: 297 RRVLSRMLISIGACSFGIYLLHPALLFLYRKLPFHGGSLAYTAAI--AGGWLVALLGSWL 354 +VL++++ +GA SFG+YL+HP L LYR+ P H G+ A+ + GG+++AL SW+ Sbjct: 302 PKVLTKVISRLGALSFGVYLIHPFFLLLYREYPLHTGT-AWLLHLWYLGGFVLALTASWI 360 Query: 355 VVAVVFRYVKPAWVVFGSGPHKPQKKAA 382 VV RYV W+ FG+ P KP+K+ + Sbjct: 361 VVGFFARYVPFNWIAFGNLP-KPKKRPS 387 >A3I592.1 A3I592_9BACI Acyltransferase 3 Length = 375 Score = 239 bits (611), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 137/354 (38%), Positives = 217/354 (61%), Gaps = 13/354 (3%) Query: 27 TSRTLAETLDTSMFHPFLFINKFSQFAVPSFVFLSGFVLFYNYIDRPLTGKTLGKFYSRR 86 ++ A ++++ ++ ++F+N F +FAVP F+FLSGFVLFYNYI + T + +FY +R Sbjct: 27 STPVTALSIESRLYSIYVFLNIFPKFAVPVFIFLSGFVLFYNYIQKDFTKTLIVRFYKKR 86 Query: 87 LIYIIVPYVVFSLMYFI-LKMTAGHTWNLPLDEM-AHKLGKYLLTGTAYTHLYYIIIIIQ 144 + I++PY+ FS+ Y+ ++ H ++L + + + + LL G YTHLYYI I++Q Sbjct: 87 VTQILIPYLFFSVFYYAAMQFYVTHDFSLTWHALFSVEFLEKLLIGKTYTHLYYIFIMVQ 146 Query: 145 FYVLFPLMLWCLQKVRRLAAWAPLIGLLLQWGFVLLNKYMTNHGYWHLSKGSLSITYFSY 204 FY+LFPL L+ L+K L+ IGL LQW F+ N + + +GS+S +Y Y Sbjct: 147 FYLLFPLFLYILKKKPALSPHLIWIGLALQWIFIQFNAEFWQYPF----RGSISFSYILY 202 Query: 205 FLLGAAIAVYYGTLKRWLILSREGWLSGKGPGWI-VLWVLWAAAGIIHVELWFNSYTKKT 263 FL GA + +Y+ KRW L++E + P I +W +W + I ++ L++ Y+ +T Sbjct: 203 FLAGAFLGIYFEKYKRWFQLTKENF-----PVSIYFIWAIWLFSTIYNIYLYYFVYSSQT 257 Query: 264 VI-NSLWYEGFSNLHALLSCIVLLQLSFLLYGTGRRVLSRMLISIGACSFGIYLLHPALL 322 + NS+ +E L +L +CIV+LQLSF +Y G + LI++G SFGIYLLHP L Sbjct: 258 YLANSIVFELVFQLQSLSACIVVLQLSFWIYERGNKTFVNALINLGTLSFGIYLLHPFFL 317 Query: 323 FLYRKLPFHGGSLAYTAAIAGGWLVALLGSWLVVAVVFRYVKPAWVVFGSGPHK 376 FLYR++P G SL + GG++VAL +W+VV +V +Y+K W+ FG P + Sbjct: 318 FLYRQIPVSGNSLLFHVWSVGGFIVALFATWIVVFLVGKYIKYHWIAFGPIPKE 371 >B3K342.1 B3K342_9BACI Putative uncharacterized protein Length = 341 Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 139/324 (42%), Positives = 194/324 (59%), Gaps = 10/324 (3%) Query: 64 VLFYNYIDRPLTGKTLGKFYSRRLIYIIVPYVVFSLMYFILKMTAGHTWNLPLDEMAHK- 122 +LFYNY DRPLT + FY RRL+YI++PYV+FS++YF ++M N D A Sbjct: 1 MLFYNYADRPLTKDLIKNFYKRRLLYILLPYVLFSIIYFFVRMYQNGMLNSSFDLWAQMP 60 Query: 123 -LGKYLLTGTAYTHLYYIIIIIQFYVLFPLMLWCLQKVRRLAAWAPLIGLLLQWGFVLLN 181 + L G YTHLY++ I +QFY+LFP+ L + R L WA IG LLQWGF++ N Sbjct: 61 LFFERLARGQNYTHLYFVFISLQFYILFPIFLKLFKSSRFLVRWAVPIGFLLQWGFIIWN 120 Query: 182 KYMTNHGYWHLSKGSLSITYFSYFLLGAAIAVYYGTLKRWLILSREGWLSGKGPGWIVLW 241 KY + + KGSL+I+Y +Y++LGA +A+ Y K WL S + SG+ G IVLW Sbjct: 121 KYELQYTF----KGSLAISYLAYYMLGAYLAMNYDKFKGWLTSSWKKQTSGQRAGTIVLW 176 Query: 242 VLWAAAGIIHVELWFNSYTKKTVINSLWYEGFSNLHALLSCIVLLQLSFLLYGTGRRVLS 301 W A + HV++W+N +SL YE NLH + S IVL+QL+ LY +G +++ Sbjct: 177 AGWLAMALTHVQIWYNQRLHGAKYDSLLYELLWNLHTVFSAIVLMQLASWLYSSGWKLIV 236 Query: 302 RMLISIGACSFGIYLLHPALLFLYRKLP--FHGGSLAYTAAIAGGWLVALLGSWLVVAVV 359 ++L IG SF IYL+HP LFLYR+ + + Y I GG + AL+ S LVV V Sbjct: 237 KVLTRIGELSFAIYLVHPLWLFLYREFDPKLNPVTDDYLIWIYGGMVTALIVSALVVQTV 296 Query: 360 FRYVKPAWVVFGSGPH--KPQKKA 381 FR++ +W++ GS P KP KA Sbjct: 297 FRWIPGSWMLLGSVPRSLKPSSKA 320 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,373,861,905 Number of extensions: 103544196 Number of successful extensions: 330334 Number of sequences better than 1.0e-05: 196 Number of HSP's gapped: 330093 Number of HSP's successfully gapped: 196 Length of query: 383 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 246 Effective length of database: 1,770,017,148 Effective search space: 435424218408 Effective search space used: 435424218408 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 132 (55.5 bits)