BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0005.p (166 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K340.1 B3K340_9BACI Transferase hexapeptide repeat containing ... 276 3e-73 B1DKW8.1 B1DKW8_9BACL Transferase hexapeptide repeat containing ... 246 4e-64 A7GUU2.1 A7GUU2_BACCN Transferase with hexapeptide repeat 228 1e-58 B3Z8X3.1 B3Z8X3_BACCE Bacterial transferase hexapeptide domain p... 228 2e-58 Q4MLY2.1 Q4MLY2_BACCE CAPG protein 227 3e-58 >B3K340.1 B3K340_9BACI Transferase hexapeptide repeat containing protein Length = 168 Score = 276 bits (707), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 134/158 (84%), Positives = 145/158 (91%) Query: 1 VEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRNVLGMKVGKHTAFGLMA 60 VEG N+LW IYRTVSP+KGV+NFIFIQIARYCPILP+KNWIYR++LGMKVGKHTAFGLM Sbjct: 10 VEGPNALWQIYRTVSPFKGVKNFIFIQIARYCPILPMKNWIYRHMLGMKVGKHTAFGLMV 69 Query: 61 MVDVFFPEKITVGENSVIGYNTTILAHEYLIKEYRLGEVIIGENVLIGANTTILPGVIIG 120 MVDVFFPEKIT+GENSVIGYNTTILAHEYLIKEYRLGEV IGENVLIGANTTILPGV IG Sbjct: 70 MVDVFFPEKITIGENSVIGYNTTILAHEYLIKEYRLGEVRIGENVLIGANTTILPGVTIG 129 Query: 121 DGAVIAAGSVVHKDVAAGSFVGGNPLRELRPSARNDRD 158 DGAV+AAGSVVHKDVA G FVGGNPLREL+ ++ Sbjct: 130 DGAVVAAGSVVHKDVAPGVFVGGNPLRELKRASTESES 167 >B1DKW8.1 B1DKW8_9BACL Transferase hexapeptide repeat containing protein Length = 175 Score = 246 bits (628), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/164 (73%), Positives = 137/164 (83%), Gaps = 3/164 (1%) Query: 1 VEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRNVLGMKVGKHTAFGLMA 60 VEG N+LW +YRTVS +K VRNFI IQ ARYCP L VKNWIYRN+LGMKVGK TAF LM Sbjct: 9 VEGPNALWQMYRTVSRFKAVRNFIAIQAARYCPELTVKNWIYRNILGMKVGKETAFALMV 68 Query: 61 MVDVFFPEKITVGENSVIGYNTTILAHEYLIKEYRLGEVIIGENVLIGANTTILPGVIIG 120 MVDVFFPE+I VG+N++IGYNTTIL HEYLIKEYRLG V IG NV+IGAN+TILPGV IG Sbjct: 69 MVDVFFPERIEVGDNTIIGYNTTILTHEYLIKEYRLGSVKIGSNVMIGANSTILPGVTIG 128 Query: 121 DGAVIAAGSVVHKDVAAGSFVGGNPLRELRPSARNDRDDSEDND 164 D AVIAAGSVVHKDV+A +FVGGNP+RE+R R D + ++ D Sbjct: 129 DNAVIAAGSVVHKDVSANTFVGGNPIREIR---RTDAGEHKNED 169 >A7GUU2.1 A7GUU2_BACCN Transferase with hexapeptide repeat Length = 166 Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 106/156 (67%), Positives = 128/156 (82%) Query: 1 VEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRNVLGMKVGKHTAFGLMA 60 V G NSLW +Y+TVS WK ++NFI IQIARY P L +KNW+YR L M+VGK TAF LM Sbjct: 11 VSGANSLWNVYKTVSFWKVMKNFIVIQIARYTPFLTIKNWLYRTFLRMEVGKQTAFALMV 70 Query: 61 MVDVFFPEKITVGENSVIGYNTTILAHEYLIKEYRLGEVIIGENVLIGANTTILPGVIIG 120 M D+ FPEKITVG NS+IGYNTTILAHEYLI EYRLGEVIIG+ V+IGAN+TILPGV IG Sbjct: 71 MPDIMFPEKITVGANSIIGYNTTILAHEYLITEYRLGEVIIGDEVMIGANSTILPGVTIG 130 Query: 121 DGAVIAAGSVVHKDVAAGSFVGGNPLRELRPSARND 156 DGA+++AG++VH+DV +G+FVGGNP+R + P D Sbjct: 131 DGAIVSAGTLVHRDVPSGAFVGGNPMRIIYPKEDQD 166 >B3Z8X3.1 B3Z8X3_BACCE Bacterial transferase hexapeptide domain protein Length = 170 Score = 228 bits (580), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 105/147 (71%), Positives = 125/147 (85%) Query: 1 VEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRNVLGMKVGKHTAFGLMA 60 V G NSLW +Y+TVS WK ++NFI IQIARY P L VKNW+YR L MKVGK T+F LM Sbjct: 9 VSGENSLWNVYKTVSFWKVMKNFIIIQIARYTPFLSVKNWLYRTFLRMKVGKKTSFALMV 68 Query: 61 MVDVFFPEKITVGENSVIGYNTTILAHEYLIKEYRLGEVIIGENVLIGANTTILPGVIIG 120 M D+ FPEKITVGENS+IGYNTT+LAHEYLI+EYRLGE+ IG V+IGANTTILPGV IG Sbjct: 69 MPDIMFPEKITVGENSIIGYNTTLLAHEYLIREYRLGEIFIGNEVMIGANTTILPGVKIG 128 Query: 121 DGAVIAAGSVVHKDVAAGSFVGGNPLR 147 DGA+++AG++VHKDV +G+FVGGNP+R Sbjct: 129 DGAIVSAGTLVHKDVPSGAFVGGNPMR 155 >Q4MLY2.1 Q4MLY2_BACCE CAPG protein Length = 168 Score = 227 bits (579), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 104/147 (70%), Positives = 126/147 (85%) Query: 1 VEGHNSLWYIYRTVSPWKGVRNFIFIQIARYCPILPVKNWIYRNVLGMKVGKHTAFGLMA 60 V G NSLW +Y+TVS WK ++NFI IQIARY P L VKNW+YR L MKVGK T+F LM Sbjct: 9 VSGENSLWNVYKTVSFWKVMKNFIIIQIARYTPFLSVKNWLYRTFLRMKVGKKTSFALMV 68 Query: 61 MVDVFFPEKITVGENSVIGYNTTILAHEYLIKEYRLGEVIIGENVLIGANTTILPGVIIG 120 M D+ FPEKITVGENS+IGYNTT+LAHEYLI+EYRLGE+I+G V+IGANTTILPGV IG Sbjct: 69 MPDIMFPEKITVGENSIIGYNTTLLAHEYLIREYRLGEIIVGNEVMIGANTTILPGVKIG 128 Query: 121 DGAVIAAGSVVHKDVAAGSFVGGNPLR 147 DGA+++AG++VH+DV +G+FVGGNP+R Sbjct: 129 DGAIVSAGTLVHRDVPSGAFVGGNPMR 155 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,092,643,720 Number of extensions: 47439153 Number of successful extensions: 150147 Number of sequences better than 1.0e-05: 2385 Number of HSP's gapped: 148478 Number of HSP's successfully gapped: 2385 Length of query: 166 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 41 Effective length of database: 1,883,069,328 Effective search space: 77205842448 Effective search space used: 77205842448 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)