BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0003.p (343 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DKW6.1 B1DKW6_9BACL Prolipoprotein diacylglyceryl transferase 349 2e-94 B3K336.1 B3K336_9BACI Prolipoprotein diacylglyceryl transferase 239 4e-61 A6CNC9.1 A6CNC9_9BACI Prolipoprotein diacylglyceryl transferase ... 206 3e-51 Q2B730.1 Q2B730_9BACI Prolipoprotein diacylglyceryl transferase ... 196 3e-48 C1P8N5.1 C1P8N5_BACCO Prolipoprotein diacylglyceryl transferase 195 4e-48 >B1DKW6.1 B1DKW6_9BACL Prolipoprotein diacylglyceryl transferase Length = 320 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 171/305 (56%), Positives = 200/305 (65%), Gaps = 2/305 (0%) Query: 4 SLAIDPIVFSIGSLPVHWYXXXXXXXXXXXXXXXIQEGKRFNIPQEFFMDMLLLGVPSAI 63 +L IDP FSIG + V WY +QEGKRF + EFFMD+LLLGVPSA+ Sbjct: 2 NLLIDPTAFSIGDIHVRWYGIILGTAALVGLLLAVQEGKRFGVKPEFFMDLLLLGVPSAV 61 Query: 64 IGARIYFVAFKWEDYKDNLIDVFKIWNXXXXXXXXXXXXXXXXXXYFRYKGYAFWRIADI 123 I ARIY+VAF W++YK+NL+DVFKIWN YFRYKGY+FWR+ DI Sbjct: 62 ICARIYYVAFTWDEYKNNLVDVFKIWNGGIAIYGALIGAFLCGFFYFRYKGYSFWRMVDI 121 Query: 124 CAPGLLAGQMIGRWGNFVNQEAYGGVVEESFLRDKLHLPDFIVNQMYIGD--AFHHPTFX 181 CAPGLLAGQMIGRWGNF+NQEAYGG V+ESFLR+ LHLPDFIV QMY+ +HHP F Sbjct: 122 CAPGLLAGQMIGRWGNFMNQEAYGGPVDESFLRNTLHLPDFIVKQMYVASEGVYHHPAFL 181 Query: 182 XXXXXXXXXXXXXXXXRRQKFVRAGEIFLSYFIWYSIGRFFIEALRTDSLAFKGNSGLAS 241 RRQKF+RAGE+ YFIWYSIGRFFIE +RTDSLAF+G L S Sbjct: 182 YESLWSLVGIIILLVIRRQKFLRAGELVAFYFIWYSIGRFFIEGIRTDSLAFQGPGALGS 241 Query: 242 FLNGLWSPMKWLGFEQGYLDPAYGNIRSSQXXXXXXXXXXXXXXXVRRVTGQPKDHYSDP 301 ++ LW+PM W GFEQG+LDPAYG++R SQ VRRV G Y+DP Sbjct: 242 LMDALWTPMTWFGFEQGFLDPAYGDVRISQLLAVLLVIAAVIFIVVRRVNGWATVRYNDP 301 Query: 302 IVSTK 306 IVSTK Sbjct: 302 IVSTK 306 >B3K336.1 B3K336_9BACI Prolipoprotein diacylglyceryl transferase Length = 222 Score = 239 bits (609), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 119/177 (67%), Positives = 128/177 (72%) Query: 4 SLAIDPIVFSIGSLPVHWYXXXXXXXXXXXXXXXIQEGKRFNIPQEFFMDMLLLGVPSAI 63 +L IDP+ FSIGSL VHWY I+EGKRF IPQEFFMD+LLLGVPSAI Sbjct: 3 TLLIDPVAFSIGSLRVHWYGLILGLGALAGLLLAIREGKRFGIPQEFFMDLLLLGVPSAI 62 Query: 64 IGARIYFVAFKWEDYKDNLIDVFKIWNXXXXXXXXXXXXXXXXXXYFRYKGYAFWRIADI 123 IGARIY+VAFKWEDYKDN +DVFKIWN Y R KGY FWRIADI Sbjct: 63 IGARIYYVAFKWEDYKDNFLDVFKIWNGGIAIFGALIGAIICALIYVRRKGYNFWRIADI 122 Query: 124 CAPGLLAGQMIGRWGNFVNQEAYGGVVEESFLRDKLHLPDFIVNQMYIGDAFHHPTF 180 CAP LLAGQ+IGRWGNFVNQEAYGG V ESFLR +LHLPDFIVNQM + FHHPTF Sbjct: 123 CAPSLLAGQIIGRWGNFVNQEAYGGPVSESFLRGELHLPDFIVNQMNVQGVFHHPTF 179 >A6CNC9.1 A6CNC9_9BACI Prolipoprotein diacylglyceryl transferase EC=2.4.99.- Length = 273 Score = 206 bits (524), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 102/228 (44%), Positives = 134/228 (58%), Gaps = 1/228 (0%) Query: 7 IDPIVFSIGSLPVHWYXXXXXXXXXXXXXXXIQEGKRFNIPQEFFMDMLLLGVPSAIIGA 66 +DP+ F G L VHWY ++E R +P++ F+D+++ +P AII A Sbjct: 8 LDPVAFEFGPLQVHWYGLIIGLGIALALYLAVKESDRLGLPKDTFIDLIVWAIPIAIISA 67 Query: 67 RIYFVAFKWEDYKDNLIDVFKIWNXXXXXXXXXXXXXXXXXXYFRYKGYAFWRIADICAP 126 RIY+VAF+W+ Y N D+ KIWN + R KG +FW+IADI AP Sbjct: 68 RIYYVAFEWDYYSQNPGDIIKIWNGGIAIHGALIGSVATAYFFARAKGLSFWKIADIAAP 127 Query: 127 GLLAGQMIGRWGNFVNQEAYGGVVEESFLRDKLHLPDFIVNQMYIGDAFHHPTFXXXXXX 186 ++ GQ IGRWGNF+NQEA+GG V FL + L LP+FI+NQMYI ++HPTF Sbjct: 128 SIILGQAIGRWGNFMNQEAHGGEVSRQFL-ENLMLPEFIINQMYINGTYYHPTFLYESLW 186 Query: 187 XXXXXXXXXXXRRQKFVRAGEIFLSYFIWYSIGRFFIEALRTDSLAFK 234 RR+ +R GE+FLSY IWYSIGRFFIEA+RTDSL Sbjct: 187 NIAGFILLLVIRRKLNLRVGELFLSYVIWYSIGRFFIEAMRTDSLMLT 234 >Q2B730.1 Q2B730_9BACI Prolipoprotein diacylglyceryl transferase EC=2.4.99.- Length = 274 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 97/238 (40%), Positives = 140/238 (58%), Gaps = 2/238 (0%) Query: 7 IDPIVFSIGSLPVHWYXXXXXXXXXXXXXXXIQEGKRFNIPQEFFMDMLLLGVPSAIIGA 66 +DPI FS+G + VHWY ++EG++ + +E F D++L +P AI+ A Sbjct: 10 LDPIAFSLGPIQVHWYGLIIGTGIALALWLAMREGEKRGLQKELFADLMLWAIPIAILSA 69 Query: 67 RIYFVAFKWEDYKDNLIDVFKIWNXXXXXXXXXXXXXXXXXXYFRYKGYAFWRIADICAP 126 R+Y+V F+W+ Y N ++ KIW+ + + KG +FW++ADI AP Sbjct: 70 RLYYVIFEWDYYAQNPAEIIKIWHGGIAIHGALIGSVITAYVFAKKKGISFWQLADITAP 129 Query: 127 GLLAGQMIGRWGNFVNQEAYGGVVEESFLRDKLHLPDFIVNQMYIGDAFHHPTFXXXXXX 186 ++ GQ IGRWGNF+NQEA+G V SFL + LHLP+FI+NQMYI ++HPTF Sbjct: 130 SIILGQAIGRWGNFMNQEAHGREVTRSFL-ENLHLPEFIINQMYINGTYYHPTFLYESLW 188 Query: 187 XXXXXXXXXXXRRQKFVRAGEIFLSYFIWYSIGRFFIEALRTDSLAFKGNSGLASFLN 244 RR +R GE+FL+Y IWYSIGRFF+E +RTDSL + +A F++ Sbjct: 189 NIAGFIILLSLRRVN-LRRGELFLTYVIWYSIGRFFVEGMRTDSLMLTESLRMAQFIS 245 >C1P8N5.1 C1P8N5_BACCO Prolipoprotein diacylglyceryl transferase Length = 271 Score = 195 bits (496), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 97/238 (40%), Positives = 132/238 (55%), Gaps = 1/238 (0%) Query: 7 IDPIVFSIGSLPVHWYXXXXXXXXXXXXXXXIQEGKRFNIPQEFFMDMLLLGVPSAIIGA 66 ++PI F +G VHWY ++E R ++ Q D+ + +P +II A Sbjct: 8 LNPIAFHLGGFSVHWYGIIIGCGILLGLALAMREADRLSVDQNIIADLCIWAIPVSIICA 67 Query: 67 RIYFVAFKWEDYKDNLIDVFKIWNXXXXXXXXXXXXXXXXXXYFRYKGYAFWRIADICAP 126 RIY+V F+WE Y + ++ KIWN + R KG +FW+IADI AP Sbjct: 68 RIYYVLFEWEYYAQHTSEIIKIWNGGIAIHGALIGAVVTAILFTRAKGVSFWKIADIVAP 127 Query: 127 GLLAGQMIGRWGNFVNQEAYGGVVEESFLRDKLHLPDFIVNQMYIGDAFHHPTFXXXXXX 186 L+ GQ IGRWGNF+NQEA+G V +FL + LHLPD+I+NQMYI ++ PTF Sbjct: 128 SLILGQAIGRWGNFMNQEAHGRAVSRAFL-ENLHLPDWIINQMYINGTYYQPTFLYESLW 186 Query: 187 XXXXXXXXXXXRRQKFVRAGEIFLSYFIWYSIGRFFIEALRTDSLAFKGNSGLASFLN 244 RR+ + GEIFL+Y IWYSIGRFFIE LRTDSL + +A ++ Sbjct: 187 DLAGFIFLLLLRRRAAMHRGEIFLTYLIWYSIGRFFIEGLRTDSLMLTAHIRMAQVVS 244 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.143 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,719,925,359 Number of extensions: 58120046 Number of successful extensions: 167820 Number of sequences better than 1.0e-05: 822 Number of HSP's gapped: 166388 Number of HSP's successfully gapped: 822 Length of query: 343 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 207 Effective length of database: 1,779,438,163 Effective search space: 368343699741 Effective search space used: 368343699741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)