BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0001.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K334.1 B3K334_9BACI ABC transporter related 436 e-121 B1DKW2.1 B1DKW2_9BACL ABC transporter related 401 e-110 C0ZBC7.1 C0ZBC7_BREBN Probable ABC transporter ATP-binding protein 317 8e-85 B7DP02.1 B7DP02_9BACL ABC transporter related protein 312 2e-83 Q9KDS1.1 Q9KDS1_BACHD Sugar ABC transportor (ATP-binding protein) 311 2e-83 >B3K334.1 B3K334_9BACI ABC transporter related Length = 376 Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust. Identities = 213/245 (86%), Positives = 224/245 (91%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LL+RKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET Sbjct: 130 LLERKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 189 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 TCIYVTHDQTEAMTMGDRIVVM DGIIQQA SPE+LYN P NLFVAGFIGSPTMNFING Sbjct: 190 TCIYVTHDQTEAMTMGDRIVVMQDGIIQQADSPEQLYNNPNNLFVAGFIGSPTMNFINGK 249 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 LS+ G V F ++ L+V+VPGGKA LL+NK IGKEVIMGVRPEDIHEEPVFLEASPNTI Sbjct: 250 LSEQNGGVYFTSQGLNVQVPGGKAQLLKNKSMIGKEVIMGVRPEDIHEEPVFLEASPNTI 309 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 FT+ VDVTENLGHEMLLYLSGLG TVI RVDGRSTTREG KLA+DMNK+HIFDKESE Sbjct: 310 FTAKVDVTENLGHEMLLYLSGLGTDTVIGRVDGRSTTREGDNVKLALDMNKVHIFDKESE 369 Query: 241 LNVLL 245 LNVLL Sbjct: 370 LNVLL 374 >B1DKW2.1 B1DKW2_9BACL ABC transporter related Length = 373 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 190/244 (77%), Positives = 215/244 (88%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKPKALSGGQRQRVALGRAIVR+PQVFLMDEPLSNLDAKLRGQMRAEI+KL KRLET Sbjct: 128 LLDRKPKALSGGQRQRVALGRAIVREPQVFLMDEPLSNLDAKLRGQMRAEISKLTKRLET 187 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQ EAMTMGDRIVVM DG IQQ ASPEELYN P N+FVAGFIG+P+MNFI GT Sbjct: 188 TTIYVTHDQIEAMTMGDRIVVMKDGFIQQTASPEELYNHPVNIFVAGFIGAPSMNFITGT 247 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 L+D GG ++F+ +DV VP GKA LR+KGYIGKEV++G+RPED+HEEPVFLEAS NTI Sbjct: 248 LTDQGGTLKFKTTGVDVVVPEGKAATLRSKGYIGKEVVLGIRPEDLHEEPVFLEASANTI 307 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 + V+V ENLGHEM LYL+G+G+ TVIARVDGRST R+GS KLA+DMNK+H+FDKESE Sbjct: 308 VNANVEVAENLGHEMYLYLNGIGSDTVIARVDGRSTLRDGSSVKLALDMNKVHMFDKESE 367 Query: 241 LNVL 244 LN+ Sbjct: 368 LNIF 371 >C0ZBC7.1 C0ZBC7_BREBN Probable ABC transporter ATP-binding protein Length = 371 Score = 317 bits (811), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 152/245 (62%), Positives = 184/245 (75%), Gaps = 1/245 (0%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKPKALSGGQRQRVALGRAIVR+PQVFLMDEPLSNLDAKLR QMR EI KL +RL T Sbjct: 127 LLDRKPKALSGGQRQRVALGRAIVREPQVFLMDEPLSNLDAKLRVQMRTEILKLHQRLNT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTMGDRIVVM DG+IQQ A+P E+YN P NLFVA FIGSP MNF+ G Sbjct: 187 TIIYVTHDQTEAMTMGDRIVVMKDGLIQQVATPTEIYNHPVNLFVASFIGSPAMNFVKGN 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASP-NT 179 LS+ GA+ F A+N+ V P KA LR KGY+ K+ I G+RPEDI+ + F+EA+P + Sbjct: 247 LSEKDGALYFDAQNIHVRFPEDKAKTLREKGYVNKQAIFGIRPEDIYSDASFMEANPFES 306 Query: 180 IFTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKES 239 + V+V EN+G E+ +Y +G ++ARVD R + K KLA+D+ K H+FD E+ Sbjct: 307 TLEAEVEVVENMGSELYVYFHNIGNTQMVARVDSREALKPKMKVKLAMDLAKCHVFDSET 366 Query: 240 ELNVL 244 E+ V Sbjct: 367 EVAVF 371 >B7DP02.1 B7DP02_9BACL ABC transporter related protein Length = 384 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 152/243 (62%), Positives = 191/243 (78%), Gaps = 1/243 (0%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 LLDRKPKALSGGQRQRVALGRAIVR+PQVFLMDEPLSNLDAKLR QMRAEI KL +RL+T Sbjct: 128 LLDRKPKALSGGQRQRVALGRAIVREPQVFLMDEPLSNLDAKLRVQMRAEIRKLHQRLQT 187 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTMGDRIVVM DG+IQQA +P+ +Y++P N+FVAGFIGSP MNFI G Sbjct: 188 TVIYVTHDQTEAMTMGDRIVVMRDGVIQQADTPQVVYSQPKNMFVAGFIGSPAMNFIRGE 247 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 + G A FRA ++ + +P G+ +L+ G IGK V++GVRPED+H+E VF+ P+++ Sbjct: 248 IVQDGDAFYFRAPSISLRLPEGRYGVLKASGAIGKPVVLGVRPEDLHDEEVFMTTYPDSV 307 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 V+V E++G E+ L+ S +G T++ARV+ R GS KLAID+NKIHIFD E+E Sbjct: 308 LQMQVEVVEHMGSEVYLHCS-IGPNTIVARVNPRHVYHVGSSVKLAIDLNKIHIFDAETE 366 Query: 241 LNV 243 ++ Sbjct: 367 ESI 369 >Q9KDS1.1 Q9KDS1_BACHD Sugar ABC transportor (ATP-binding protein) Length = 365 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 154/243 (63%), Positives = 188/243 (77%), Gaps = 5/243 (2%) Query: 1 LLDRKPKALSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRGQMRAEITKLVKRLET 60 +LDRKPKA+SGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLR QMRAEITKL +RL+T Sbjct: 127 MLDRKPKAMSGGQRQRVALGRAIVRDPQVFLMDEPLSNLDAKLRVQMRAEITKLHQRLQT 186 Query: 61 TCIYVTHDQTEAMTMGDRIVVMYDGIIQQAASPEELYNEPTNLFVAGFIGSPTMNFINGT 120 T IYVTHDQTEAMTM RIV+M DG+IQQ SP+E+Y+ P N+FV GFIGSP+MNF+NG Sbjct: 187 TTIYVTHDQTEAMTMATRIVIMKDGVIQQVGSPKEVYDFPENVFVGGFIGSPSMNFLNGR 246 Query: 121 LSDVGGAVRFRAENLDVEVPGGKATLLRNKGYIGKEVIMGVRPEDIHEEPVFLEASPNTI 180 L + + N+ +EVP GK +LR GY GKE+I+G+RPEDIH+E +F+E+SP + Sbjct: 247 LE----GSQLKIGNVSIEVPEGKLAVLREHGYEGKELILGIRPEDIHDELLFIESSPGSK 302 Query: 181 FTSLVDVTENLGHEMLLYLSGLGAGTVIARVDGRSTTREGSKPKLAIDMNKIHIFDKESE 240 T+ ++V E G E +LY S L +IARVD RS + G K +LA+DMNK H FD ESE Sbjct: 303 ITAHIEVAELTGAETVLY-SQLSDQEIIARVDSRSDIQSGDKVELALDMNKCHFFDPESE 361 Query: 241 LNV 243 L + Sbjct: 362 LRI 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,428,875,823 Number of extensions: 59112619 Number of successful extensions: 290021 Number of sequences better than 1.0e-05: 48060 Number of HSP's gapped: 292131 Number of HSP's successfully gapped: 50084 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)