BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0600.0010.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00091076.1| COG4127: Uncharacterized conserved protein [A... 243 4e-63 ref|NP_463349.1| putative restriction endonuclease [Salmonella t... 234 1e-60 ref|ZP_00173613.1| hypothetical protein Mflag045901 [Methylobaci... 204 2e-51 ref|NP_419439.1| hypothetical protein [Caulobacter crescentus CB... 88 3e-16 ref|NP_736724.1| hypothetical protein [Corynebacterium efficiens... 69 1e-10 >ref|ZP_00091076.1| COG4127: Uncharacterized conserved protein [Azotobacter vinelandii] Length = 339 Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/314 (41%), Positives = 181/314 (57%), Gaps = 16/314 (5%) Query: 1 MKSMWLVRAGERAYLIDEFKEKQAVAIGWAQLGDIGAVNT-LQEMKRLLKVTYPGYKEGK 59 M MW+VR GE L D F+E+ A+GW QL +++ L + P K+G Sbjct: 10 MARMWMVR-GEGGSLYDAFRERGVAAVGWNQLAAHAKPGVGRKQLIALYQSAEPQAKQGT 68 Query: 60 INITAGQIFRFVSEFKIDDQVITYNPEERLYYIGRIKSNYEFKPNYITD-KPHIRRIDWE 118 + A Q++RFV++ + D VITY+P RLY IG++ E P + P R++ W+ Sbjct: 69 VVSGASQVWRFVNDIQDGDWVITYSPANRLYSIGKVTGTAEHHPEWAEQGMPLARKVQWQ 128 Query: 119 GT-VSRDVLTASARNTLGSIMTIISIPNDVQKELLKQMVTGQTAGNQPSQPIESVHXXXX 177 + RD L S +N+LGS +T+ +P+ E+L + +P+ +E Sbjct: 129 TQELPRDSLGTSTKNSLGSTLTLFEVPSSAAAEVLAAL------KGKPAPAVED------ 176 Query: 178 XXXXXXXXIKEDVIEKSNEFIKDKIAKLDWKQMQKFVAGILRGMGYKTRISPDGPDRGRD 237 D+ ++ E IKD++ +LDW MQ+ VAGILR M YKT++SP G DRG+D Sbjct: 177 EAEEVIADPLADIESQALERIKDRVNELDWDDMQQLVAGILRAMSYKTQVSPPGSDRGKD 236 Query: 238 IFASPDGLGLEEPRIIVEVKHRSGSMGSNQIRSFTGGLRVGDRGIYVSTGGFTKEAKYEA 297 I ASPDG G E PRI+VEVKHR G MGS +IRSF GG DRG+YVSTGGFTK+A+YEA Sbjct: 237 IVASPDGFGFEHPRIVVEVKHRKGQMGSQEIRSFLGGRHKDDRGLYVSTGGFTKDAQYEA 296 Query: 298 DRSNIPXXXXXXXH 311 DR++IP H Sbjct: 297 DRASIPLAMWTLDH 310 >ref|NP_463349.1| putative restriction endonuclease [Salmonella typhimurium LT2] gb|AAL23308.1| putative Mrr restriction endonuclease [Salmonella typhimurium LT2] Length = 329 Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 130/298 (43%), Positives = 180/298 (60%), Gaps = 13/298 (4%) Query: 10 GERAYLIDEFKEKQAVAIGWAQLGD-IGAVNTLQEMKRLLKVTYPGYKEGKINITAGQIF 68 G+ L D+F++KQ VAIGW+QL + + +++ + P K G + A Q++ Sbjct: 4 GDGGKLYDDFRDKQVVAIGWSQLAPYVKPGCSREQLFTRYQELEPQTKSGTVRSGASQVW 63 Query: 69 RFVSEFKIDDQVITYNPEERLYYIGRIKSNYEFKPNYITDKPHI-RRIDWEGT-VSRDVL 126 RFV+E + D ITY+P R Y IG+I S++EF ++ D I R++ W + RD L Sbjct: 64 RFVNEMQKGDWAITYSPSNRTYLIGKIASDFEFHAEWLEDGMGIARKVKWNAEEIKRDSL 123 Query: 127 TASARNTLGSIMTIISIPNDVQKELLKQMVTGQTAGNQP-SQPIESVHXXXXXXXXXXXX 185 + + RNTLGS +T+ +P+ EL++ G +P S + V Sbjct: 124 SDATRNTLGSTLTVFQVPDFAVNELVQ--------GKKPVSDVVPEVPVSGEEDEVVSNP 175 Query: 186 IKEDVIEKSNEFIKDKIAKLDWKQMQKFVAGILRGMGYKTRISPDGPDRGRDIFASPDGL 245 ++ D+ + E IKD+I +LDW +MQ VAG+LR MGYKT++SP G DR +DI ASPDG Sbjct: 176 LR-DMEMIAFEGIKDRINRLDWDEMQNLVAGVLRSMGYKTQVSPAGADREKDIIASPDGF 234 Query: 246 GLEEPRIIVEVKHRSGSMGSNQIRSFTGGLRVGDRGIYVSTGGFTKEAKYEADRSNIP 303 G E PRIIVEVKHR M S QIRSF GG DRG+YVSTGGF+K+A+YEADRS IP Sbjct: 235 GFENPRIIVEVKHRREQMSSQQIRSFIGGRHKDDRGLYVSTGGFSKDARYEADRSTIP 292 >ref|ZP_00173613.1| hypothetical protein Mflag045901 [Methylobacillus flagellatus KT] Length = 254 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 108/239 (45%), Positives = 146/239 (61%), Gaps = 17/239 (7%) Query: 76 IDDQVITYNPEERLYYIGRIKSNYEFKPNYITD-KPHIRRIDWEGT-VSRDVLTASARNT 133 +DD VITY+P R Y IG I S E++ + ++ +RR+ W+ ++RD L+ ++N+ Sbjct: 1 MDDWVITYSPINRTYLIGNILSESEYRHDLVSQGMALVRRVKWQTQELARDDLSTPSKNS 60 Query: 134 LGSIMTIISIPNDVQKELLKQMVTGQT-AGNQPSQPIESVHXXXXXXXXXXXXIKEDVIE 192 LGS MT+ +P V E+L + T G P + I+ D+ Sbjct: 61 LGSTMTVFEVPAAVATEILGILQGSSTGCGTPPDEIIDDP--------------LADIDS 106 Query: 193 KSNEFIKDKIAKLDWKQMQKFVAGILRGMGYKTRISPDGPDRGRDIFASPDGLGLEEPRI 252 ++ E IKD + KLDW MQ+ VAGILR MGYKT+++P G DRG+DI ASPDG G E PRI Sbjct: 107 QALERIKDMVNKLDWDDMQQLVAGILRAMGYKTQVAPPGSDRGKDIVASPDGFGFEHPRI 166 Query: 253 IVEVKHRSGSMGSNQIRSFTGGLRVGDRGIYVSTGGFTKEAKYEADRSNIPXXXXXXXH 311 +VEVKH G +GS IRSF GG DRG+YVSTGGFTK+A+YEADR++IP H Sbjct: 167 VVEVKHHKGQIGSQDIRSFLGGRHKDDRGLYVSTGGFTKDAQYEADRASIPLAMWTLDH 225 >ref|NP_419439.1| hypothetical protein [Caulobacter crescentus CB15] pir||C87326 hypothetical protein CC0622 [imported] - Caulobacter crescentus gb|AAK22607.1| hypothetical protein [Caulobacter crescentus CB15] Length = 347 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 125/304 (41%), Gaps = 18/304 (5%) Query: 1 MKSMWLVRAGERAYLIDEFKEKQAVAIGWAQLGDIGAVNTLQEMKRLLKVTYPGYKEGKI 60 M +W+VRAG E + + G+ ++ D+ + + + R+L TYP + Sbjct: 1 MTRLWIVRAGRHGERELEAITQGRLLPGFGEVADLTGLKDREAILRVLAATYPTEGANTL 60 Query: 61 NITAGQIFRFVSEFKIDDQVITYNPEERLYYIGRIKSNYEFKPNYITDKPHIRRIDW-EG 119 A Q+ +FV+ + D V+ IGR+ Y P H R ++W Sbjct: 61 RNFAAQMNQFVNTIGVGDLVVLPRKVTSGVAIGRVTGPYRHDPA--APIAHTRAVEWLNE 118 Query: 120 TVSRDVLTASARNTLGSIMTIISIPNDVQKELLKQMVTGQTAGNQPSQPIESVHXXXXXX 179 V R+ R++ G+ +TI + + E L ++ G P P+ Sbjct: 119 AVPREAFAQDLRHSFGAFLTICEVKRN---EALARVEAVLKTGKDPG-PLLGKQGVVTVK 174 Query: 180 XXXXXXIKEDVIEKSNEFIKDKIAKL-----DWKQMQKFVAGILRGMGYKTRISPDGPDR 234 EDV + + +I L + VA ILR GY T++SP GPD Sbjct: 175 APVEDAEAEDVELDVEDIARQQIIALIKSAFAGHDLAYLVAEILRIEGYVTKVSPPGPDG 234 Query: 235 GRDIFASPDGLGLEEPRIIVEVKHRSGSMGSNQ--IRSFTGGLRVGD--RGIYVSTGGFT 290 G DI A+ LGL E RI V+VK SG +NQ + G ++ G+ VS G Sbjct: 235 GVDILAAGGRLGLGEDRICVQVK--SGDAPANQEVVLKLMGSVQAAKARTGLLVSIAGVN 292 Query: 291 KEAK 294 A+ Sbjct: 293 GPAQ 296 >ref|NP_736724.1| hypothetical protein [Corynebacterium efficiens YS-314] dbj|BAC16924.1| hypothetical protein [Corynebacterium efficiens YS-314] Length = 351 Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 133/304 (43%), Gaps = 17/304 (5%) Query: 5 WLVRAGERAYLIDEFKEKQAVAIGWAQLG-DIGAVNTLQEMKRLLKVTYPGYKEGKINIT 63 W++RAG+ + K GW + G ++ + T +E++ ++ Y NI Sbjct: 4 WVIRAGKHGERAEWAWSKGFSGGGWYEAGPELLSCTTREEVQAHVERAYAHESTAIPNII 63 Query: 64 AGQIFRFVSEFKIDDQVITYNPEERLYYIGRIKSNYEFKPNYITDKPHIRR---IDWEGT 120 A Q++ V K+ D + + R +G I + ++ + + P R I+W Sbjct: 64 A-QLWMLVGRIKVGDLIAMPIKQTREIALGWITTPLQYLDD--QEDPEKRLVFGINWINR 120 Query: 121 VSRDVLTASARNTLGSIMTIISIPNDVQKELLKQMV-TGQTAGNQPSQPIESVHXXXXXX 179 V R + +LG+ +T+ S + + LK ++ TG G Q ++ Sbjct: 121 VPRTAVKQDLLYSLGATLTVFSPSRNQAEYRLKTLLETGTDPGIQQESLGKAAMAATVAT 180 Query: 180 XXXXXXIKEDVIEKSNEFIKDKIAKLDWKQ-----MQKFVAGILRGMGYKTRISPDGPDR 234 V + E D+I++L ++ + + ++ ILR G+ SP+GPD Sbjct: 181 AENEDPNVPTVQQDIEEMALDQISELISQEFTGHGLTRLISDILRAEGFHVEESPEGPDG 240 Query: 235 GRDIFASPDGLGLEEPRIIVEVKHRSGSMGSNQIRSFTGGLRV--GDRGIYVSTGGFTKE 292 G DI A LGLE P+I+V+VK + + ++ TG + D G+ V+ GG T Sbjct: 241 GIDIIAGRGLLGLESPKILVQVK--TPKVDRPVVQQLTGLVSSHEADYGLIVAWGGLTSA 298 Query: 293 AKYE 296 A+ E Sbjct: 299 ARQE 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 443,174,352 Number of extensions: 18177785 Number of successful extensions: 41231 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 41239 Number of HSP's successfully gapped: 10 Length of query: 311 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 186 Effective length of database: 417,850,203 Effective search space: 77720137758 Effective search space used: 77720137758 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)