BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0153.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060316.1| hypothetical protein [Clostridium thermocellu... 318 5e-86 ref|NP_617121.1| predicted protein [Methanosarcina acetivorans s... 110 3e-23 ref|NP_722248.1| hypothetical protein [Streptococcus mutans UA15... 109 7e-23 ref|NP_967777.1| conserved hypothetical protein [Bdellovibrio ba... 82 2e-14 ref|NP_599310.1| hypothetical protein NCgl0057 [Corynebacterium ... 79 1e-13 >ref|ZP_00060316.1| hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 260 Score = 318 bits (816), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 158/244 (64%), Positives = 200/244 (81%), Gaps = 2/244 (0%) Query: 1 MAIEVFNRYENKYLLDHAAYQKLYNDLLEYMEPDDYNK-QHEFYSITNLYYDTAHDSLIR 59 +AIEVFNRYE KYL+D+ Y+K+ + L EYME D+YNK + +Y+I N+YYDT + LIR Sbjct: 4 LAIEVFNRYEKKYLMDNDTYEKIKDILAEYMELDEYNKVNNTYYTICNIYYDTQDNQLIR 63 Query: 60 SSLAKPKYKEKLRLRAYGVPDQDTKVYLEIKKKVFGLVNKRRTSLKLQEAYDFVATGVEP 119 S++KP+YKEKLRLR+YGVP D KVYLEIKKKV GLVNKRRT L L+EAY+F ATG++P Sbjct: 64 HSVSKPRYKEKLRLRSYGVPSLDAKVYLEIKKKVNGLVNKRRTKLTLREAYEFAATGIKP 123 Query: 120 EYREYMNKQVIEEIKYFLSRYDLMPKVYLSYERKALFCKNNRDLRITFDTNIRSRRYDLK 179 +Y+ YMNKQV+ EI+Y LS YDL PK+YL+Y+R A F NNRDLRITFDTNIRSRR DL+ Sbjct: 124 KYQSYMNKQVLNEIEYILSVYDLEPKLYLAYDRIAYFGINNRDLRITFDTNIRSRRTDLR 183 Query: 180 LEHGTHGEYLMPQGQWLMEVKAEKTIPVWLAKMLSEHRMYRTSFSKYGNEYKQMLKASKI 239 LE G +GE L+ +G WLMEVKAEK+I VWL++MLSE+ +++TSFSKYG EYK+M+ + I Sbjct: 184 LELGDYGEPLLDEGVWLMEVKAEKSISVWLSRMLSENGLFKTSFSKYGTEYKKMI-LNNI 242 Query: 240 EKES 243 KE+ Sbjct: 243 AKEN 246 >ref|NP_617121.1| predicted protein [Methanosarcina acetivorans str. C2A] gb|AAM05601.1| predicted protein [Methanosarcina acetivorans str. C2A] Length = 288 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 3 IEVFNRYENKYLLDHAAYQKLYNDLLEYMEPDDYNKQHEFYSITNLYYDTAHDSLIRSSL 62 I FNR+E KYLL +L + Y+ PD Y+ Y IT+LYYD+ + Sbjct: 45 IRKFNRFELKYLLTIKQANELKEQVKHYLIPDPYSWASGDYVITSLYYDSPDLQCYWEKV 104 Query: 63 AKPKYKEKLRLRAYGVPD---QDTKVYLEIKKKVFGLVNKRRTSLKLQEAYDFVATGVEP 119 K+++KLR+R Y + +D+ +++E+K++ + KRR +K +++ + P Sbjct: 105 NGIKFRKKLRIRFYETKEKLTEDSLIFVEVKQRYDKTIQKRRVEMKYKDSLTLCNERIIP 164 Query: 120 EYREYMNKQVIEEIKYFLSRYDLMPKVYLSYERKALFCKNNRD--LRITFDTNIRSRRYD 177 E+ E + VIEEI + +L P + SY R A F + D LRITFD+NIR R D Sbjct: 165 EHNE-EDTPVIEEILAMVEERNLQPTLITSYFRHA-FVGTDYDIGLRITFDSNIRYRIND 222 Query: 178 LKLEHGTHGEYLMPQGQWLMEVKAEKTIPVWLAKMLSEHRMYRTSFSKY 226 L L G +++ + ++E+KA + +P WL ++++++ SKY Sbjct: 223 LDLNSKKPGRFIVSPDRVILEIKANERVPFWLTELIAQNNYRLVRISKY 271 >ref|NP_722248.1| hypothetical protein [Streptococcus mutans UA159] gb|AAN59554.1| hypothetical protein SMU.1945 [Streptococcus mutans UA159] Length = 254 Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 121/232 (52%), Gaps = 13/232 (5%) Query: 6 FNRYENKYLLDHAAYQKLYNDLLEYMEPDDYNKQHEFYSITNLYYDTAHDSLIRSSLAKP 65 F R E KYL++ +++L + +Y+ PD + SITN+Y+D LI+ S+ Sbjct: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHS----SITNIYFDNPDFQLIKDSINHR 65 Query: 66 KYKEKLRLRAYGV-PDQDTKVYLEIKKKVFGLVNK-----RRTSLKLQEAYDFVATGVEP 119 EK+R+R Y P Q ++ +LEIKKK + + R TS L ++V G+ Sbjct: 66 HASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLC-NYVQQGI-I 123 Query: 120 EYREYMNKQVIEEIKYFLSRYD-LMPKVYLSYERKALFCKNNRDLRITFDTNIRSRRYDL 178 + + + E+ RY L+PK+++ YER +L N LR+TFD N+ R ++ Sbjct: 124 DNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRHENV 183 Query: 179 KLEHGTHGEYLMPQGQWLMEVKAEKTIPVWLAKMLSEHRMYRTSFSKYGNEY 230 L G +G L+ Q +ME+K + +P W+ K+ +H++ SFSKY Y Sbjct: 184 NLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAY 235 >ref|NP_967777.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100] emb|CAE78770.1| conserved hypothetical protein [Bdellovibrio bacteriovorus] Length = 261 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 112/250 (44%), Gaps = 12/250 (4%) Query: 8 RYENKYLLDHAAYQKLYNDLLEYMEPDDYN--KQHEFYSITNLYYDTAHDSLIRSSLAKP 65 RYE KYL+ + + + + Y E D Y+ + Y+I +LY DT L+R + Sbjct: 12 RYELKYLIPASLVEPISRFVETYCEMDYYSTVSPDKHYTINSLYLDTPSLYLLRFKESAN 71 Query: 66 KYKEKLRLRAYGVPDQDTKVYLEIKKKVFGLVNKRRTSLKLQEAYDFVATGVEPEYREYM 125 Y +R+R+YG + + EIK K+ V K+R + + D + G P + + Sbjct: 72 AYSFNMRIRSYG-DNPKPPYFFEIKYKLREFVRKKRALVHDENWADILEWGAIPAHIQGS 130 Query: 126 NKQVIEEIKYFLSRYDLMPKVYLSYERKALFCKNNRDLRITFDTNIR--------SRRYD 177 ++ +EE Y++ P + Y RKA + R+TFD ++R R Sbjct: 131 SRGNLEEFLRVKMTYNVGPVILTQYRRKAYLSVVDDYARVTFDRDLRYQEMNEWCVRPNA 190 Query: 178 LKLEHGTHGE-YLMPQGQWLMEVKAEKTIPVWLAKMLSEHRMYRTSFSKYGNEYKQMLKA 236 L H H + + P ++E+K EK IP W+ ++ + SFSK+GN + Sbjct: 191 HLLSHYDHPDSFEEPGCNVVLELKCEKKIPYWMVDLIRRFELESGSFSKFGNSMLTLFGV 250 Query: 237 SKIEKESALY 246 ++ LY Sbjct: 251 PEVLSPGPLY 260 >ref|NP_599310.1| hypothetical protein NCgl0057 [Corynebacterium glutamicum ATCC 13032] dbj|BAB97451.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] emb|CAF18626.1| Conserved HYPOTHETICAL PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 280 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/239 (27%), Positives = 100/239 (41%), Gaps = 23/239 (9%) Query: 6 FNRYENKYLLDHAAYQKLYNDLLEYMEPDDYNKQHEFYSITNLYYDTAHDSLIRSSLAKP 65 FNR+E KYL+ L L M D + Y + +LY+D+A + Sbjct: 25 FNRFEIKYLITEQDVPALREQLATRMSTDPLSPPGG-YRVESLYFDSADLRCYTEKIEGL 83 Query: 66 KYKEKLRLRAYG--VPDQDTKVYLEIKKKVFGLVNKRRTSLKLQEAYDF-----VATG-- 116 K++ KLR+R YG V ++ V +EIK++V + KRR L A A G Sbjct: 84 KFRRKLRIRTYGDGVLTPESTVSVEIKQRVNKVTQKRRLDLPFIYALALGDSTGAAVGEQ 143 Query: 117 --------VEPEYREYMNKQVIEEIKYFLSRYDLMPKVYLSYERKALFCKNNRDL-RITF 167 + PE + + I E+ F Y L P Y R+A + + R+T Sbjct: 144 VDVEKLLEISPENQHAL----IHEMASFAKNYRLRPIATTKYHREAFVGADAEESSRVTI 199 Query: 168 DTNIRSRRYDLKLEHGTHGEYLMPQGQWLMEVKAEKTIPVWLAKMLSEHRMYRTSFSKY 226 D + R D L + QG ++E+K ++ +P WL M ++ M SKY Sbjct: 200 DHGVSGRDRDFLLGQDLEDRPTVAQGLAVVEIKCDERVPFWLTDMTAQLEMSVIRMSKY 258 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 371,101,635 Number of extensions: 15388780 Number of successful extensions: 41584 Number of sequences better than 1.0e-05: 20 Number of HSP's gapped: 41569 Number of HSP's successfully gapped: 20 Length of query: 247 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 125 Effective length of database: 425,995,500 Effective search space: 53249437500 Effective search space used: 53249437500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)