BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0147.p (654 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_834530.1| ABC transporter permease protein [Bacillus cere... 231 3e-59 ref|NP_658861.1| DUF214, Predicted permease [Bacillus anthracis ... 227 7e-58 ref|NP_981277.1| ABC transporter, permease protein [Bacillus cer... 227 7e-58 ref|NP_834523.1| ABC transporter permease protein [Bacillus cere... 213 1e-53 ref|NP_471553.1| similar to ABC transporter (permease) [Listeria... 202 2e-50 >ref|NP_834530.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] gb|AAP11731.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] Length = 649 Score = 231 bits (590), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 177/664 (26%), Positives = 316/664 (47%), Gaps = 30/664 (4%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +RN++RNF+ Y +Y SMI ++I FTF +L YN + A + + Sbjct: 1 MTLSSIALRNIQRNFKDYFVYFASMIFSIVIYFTFKALQYNSQMEKAAEASKKISGAFQV 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N FF ++RKKE G+Y L G+ +RQI +M+FYE ++M +SL G Sbjct: 61 SSVMLIIFVAVFIIYSNGFFTRKRKKEVGLYSLLGIRKRQIGKMLFYENMLMGLMSLVIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I IG +LSKLF LL+++M N + PM +I T +F ++ + S+Q Y ++ R + Sbjct: 121 IAIGSVLSKLFLELLVNMMGLNLNVHFEVPMAAIIDTAIIFFVIILYTSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A+++ E + S A+I+V L+G + L +V + D+ V++ + + Sbjct: 181 LIELFRAEREGEAMPKGSVIMALISVFLIGSGYFLALMYMKAVMYADFMVVALY-ILLAT 239 Query: 241 IAGTFLFFRQLAGW-LAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 +AGT+L F + L +A + + +Y G M+ TS L ++I+GN +L I++ SA + Sbjct: 240 VAGTYLLFMFFTVFVLKRARNNKSAFYNGMNMVTTSQLLYRIKGNAKSLATIAILSAVTL 299 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLI--RSSGHEVRYHLTQEAI 357 + Y F P ++E ++ + +++ ++ + H V Y E I Sbjct: 300 TAVGTSVTMYYNTFTQSKVAAPYSYSYEKKDAALDKKVNEILAGEKNNHPVTYESEVEMI 359 Query: 358 VAEPV--SDMGPAFENPEY-YTPYLLLVSEQTYNGLMQERDPKQILDLQGEEAVT----L 410 + + N Y T L+S+ ++N ++ D + + +L EA Sbjct: 360 PVKGTFKGERADQVLNAHYNVTNQYQLISQSSFNKHVKHLDVEPV-NLSANEAFVYDSLY 418 Query: 411 AQGSDFAQSYAANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPAVLVISD 470 + DF Y N F V E K+ G ++ + ++ +++ D Sbjct: 419 IEKLDFGPLYTGN-TAVFPVGN---------ESKELKIKGVNNRSLTNL--NELFVIVPD 466 Query: 471 EAYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYSK---QIE 527 + Y +++ + ++ + + ++EL+ ++ +I+ F D Y+ +E Sbjct: 467 KTYEQVKQVNETRTVKNIDVKGERNSKELTAKLASIMPAGESEVLKPFNDFYTGFQMGLE 526 Query: 528 XXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKSVIRKQX 587 S+IYFKQL EA+ +R +Y +L K+GV ++MK I KQ Sbjct: 527 TTGLMMFIGLFLGLVFLLATGSIIYFKQLTEASADRDRYIVLHKVGVTKQEMKKAIAKQV 586 Query: 588 XXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVSSTNVYY 647 G+ HS F +K L ++ F + + I GVY +IY+ +Y + YY Sbjct: 587 SFIFAIPLVIGILHSLFALKG--LSNILPFEIMIPLLISI-GVYGVIYIGYYFLTVRSYY 643 Query: 648 KIVN 651 KIV+ Sbjct: 644 KIVS 647 >ref|NP_658861.1| DUF214, Predicted permease [Bacillus anthracis A2012] ref|NP_847274.1| ABC transporter, permease protein [Bacillus anthracis str. Ames] gb|AAP28760.1| ABC transporter, permease protein [Bacillus anthracis str. Ames] Length = 649 Score = 227 bits (579), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 176/664 (26%), Positives = 310/664 (46%), Gaps = 30/664 (4%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +RN++RNF+ Y +Y SMI ++I FTF +L YN + A + + Sbjct: 1 MTLSSIALRNIQRNFKDYFVYFASMIFSIVIYFTFKALQYNSQMEKAAEASKKISGAFQV 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N FF ++RKKE G+Y L G+ +RQI +M+FYE ++M +SL G Sbjct: 61 SSVMLIIFVAVFIIYSNGFFTRKRKKEVGLYSLLGIRKRQIGKMLFYENMLMGLMSLIIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I IG +LSKLF LL+ +M + PM +I T +F ++ + S+Q Y ++ R + Sbjct: 121 IAIGSVLSKLFLELLVSMMGLKLNVHFEVPMAAIVDTAIIFFVIILYTSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A+++ E + S A+I+V L+G + L +V + D+ V++ + + Sbjct: 181 LIELFRAEREGEAMPKGSVIMALISVFLIGSGYFLALMYMKAVMYADFMVVALY-ILLAT 239 Query: 241 IAGTFLFFRQLAGW-LAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 +AGT+L F + L +A + + +Y G M+ TS L ++I+GN +L I++ SA + Sbjct: 240 VAGTYLLFMFFTVFILKRARNNKSAFYNGMNMVTTSQLLYRIKGNAKSLATIAILSAVTL 299 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLI--RSSGHEVRYHLTQEAI 357 + Y F P ++E + + +++ ++ + H V Y E I Sbjct: 300 TAVGTSVTMYYNTFTQSKVAAPYSYSYEKKDEALDKKVNEILAGEKNNHPVTYESEFEMI 359 Query: 358 VAEPV--SDMGPAFENPEY-YTPYLLLVSEQTYNGLMQERDPKQILDLQGEEAVT----L 410 + + N Y T L+S+ +N + + D + + +L EA Sbjct: 360 PVKGTFKGERADQVLNTHYNVTKQYQLISQSNFNTIAKHLDIEPV-NLSANEAFVYDSLY 418 Query: 411 AQGSDFAQSYAANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPAVLVISD 470 + DF Y N F V E K+ G +S V ++ +++ D Sbjct: 419 IETLDFGPLYTGN-TAVFPVGN---------ESKELKIKGVNSRSVTNL--NELFVIVPD 466 Query: 471 EAYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYS---KQIE 527 + Y ++ + + + + ++EL+ ++ +++ F D Y+ +E Sbjct: 467 QTYEQAKQVNETRIVKNIDVKGERNSKELTAKLASVMPAGESEILKPFHDFYTGFQTGLE 526 Query: 528 XXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKSVIRKQX 587 S+IYFKQL EA+ +R +Y +L K+GV ++MK I KQ Sbjct: 527 TTGLMMFIGLFLGLVFLLATGSIIYFKQLTEASADRDRYVVLHKVGVTKQEMKKAIAKQV 586 Query: 588 XXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVSSTNVYY 647 G+ HS F +K L ++ + + + I GVY +IY+ +Y + YY Sbjct: 587 SFIFAIPLVIGILHSLFALKG--LGNILPYEIMIPLLISI-GVYGVIYIGYYFLTVRSYY 643 Query: 648 KIVN 651 KIV+ Sbjct: 644 KIVS 647 >ref|NP_981277.1| ABC transporter, permease protein [Bacillus cereus ATCC 10987] gb|AAS43885.1| ABC transporter, permease protein [Bacillus cereus ATCC 10987] Length = 649 Score = 227 bits (578), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 179/680 (26%), Positives = 317/680 (46%), Gaps = 62/680 (9%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L + +RN++RNF+ Y +Y SMI ++I FTF +L YN + A + + Sbjct: 1 MTLSSIALRNIQRNFKDYFVYFASMIFSIVIYFTFKALQYNSQMEKAAEASKKISGAFQV 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N FF ++RKKE G+Y L G+ +RQI +M+FYE ++M +SL G Sbjct: 61 SSVMLIIFVAVFIIYSNGFFTRKRKKEVGLYSLLGIRKRQIGKMLFYENMLMGLMSLIIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I IG +LSKLF LL+ +M N + P+ +I T +F ++ + S+Q Y ++ R + Sbjct: 121 IAIGSVLSKLFLELLVSMMGLNLNVHFEVPIAAIIDTALIFFVIILYTSLQGYRLIYRFK 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A+++ E + S A I+V+L+G + L +V + D+ V++ + + Sbjct: 181 LIELFRAEREGEAMPKGSVIMAFISVVLIGSGYFLALMFMKAVKYADFMAVALY-ILLAT 239 Query: 241 IAGTFLFFRQLAGW-LAQAVSRRKKYYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 + GT+L F + L +A + + +Y G M+ TS L ++I+GN +L IS+ SA + Sbjct: 240 VLGTYLLFMFFTVFVLKRARTNKSSFYNGMNMVTTSQLLYRIKGNAKSLATISILSAVTL 299 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRSSGHEVRYHLTQEAIVA 359 + Y F P ++E + + +++++ E + H ++ Sbjct: 300 TAVGTSVTMYYNTFTQSKAVAPYSYSYEKKDAELDKKVNAIF---AEEKKNHPIKDQFEI 356 Query: 360 EPVSDMGPAFENPEYYTPYLL-----------LVSEQTYNGLMQERDPKQILDLQGEEAV 408 E V G FE + ++L +S+ +N ++ D + + GE + Sbjct: 357 ETVPVKGK-FEGDK--VDFILNMNYRISEKYQFMSQSEFNKFAKKIDAETVNVAAGEAFI 413 Query: 409 ---TLAQGSDFAQSYAANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPA- 464 + +G +F+ +Y N+ T F+I + +++ IK A Sbjct: 414 YDSSYMEGHEFSPTYKGNK-----------TVFQI------------GNETKTLTIKDAN 450 Query: 465 ----------VLVISDEAYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAY 514 V+V+SDE Y ++ + + + D ++ L++++ ++ Sbjct: 451 NTAITNLGELVVVVSDEMYEQAKQAFGTRVVKNIDVKDEKDSKVLTEKLTKVMPAGESEM 510 Query: 515 YSSFADVYSK---QIEXXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRK 571 SF D Y+ +E S+IYFKQL EA +R +Y +L K Sbjct: 511 VLSFRDFYTGFHMGLEGTGLMMFIGMFLGLVFLLATGSIIYFKQLTEANADRERYVVLHK 570 Query: 572 MGVDDRQMKSVIRKQXXXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVY 631 +GV ++MK I KQ G+ HS F +K L ++ F + + I GVY Sbjct: 571 IGVTKQEMKKAIAKQVSFIFAIPLVIGILHSLFALKG--LATLIQFEIMIPLLISI-GVY 627 Query: 632 FLIYVLFYVSSTNVYYKIVN 651 +IY+ +Y + YYKIV+ Sbjct: 628 GVIYIGYYFLTVRSYYKIVS 647 >ref|NP_834523.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] gb|AAP11724.1| ABC transporter permease protein [Bacillus cereus ATCC 14579] Length = 634 Score = 213 bits (542), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 170/662 (25%), Positives = 316/662 (47%), Gaps = 38/662 (5%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 MSL + +RN+KRNF+ Y IY SMI ++I FTF +L YN I +A N G + Sbjct: 1 MSLSSIALRNIKRNFKDYFIYFASMIFSIVIYFTFKALQYNSQISEAGDNIGR---GFQL 57 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 AS Y+N FF ++RKKE G+Y L G+ +++I +M+FYE ++M SL G Sbjct: 58 ASVMLIIFVAIFIIYSNDFFTRKRKKEIGVYSLLGIRKKEIGKMLFYENMLMGLSSLVIG 117 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 I+IG LLSK F LL++++ + + P+ ++ T +F L+ + S + Y ++ + + Sbjct: 118 IVIGSLLSKGFLKLLLNMLELHVNVHFEVPVGAVIDTTVIFCLIILYTSFKGYRVIYQFK 177 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALISSGKGSVFWQDYATVSMIAVTIGI 240 L ELF A + E + S A I++LL+G + L + +V ++ +++ + + Sbjct: 178 LIELFRADNEGEVMPKGSKIMAFISLLLIGSGYFLSVTAIKNVSGDNFMPLAL-YILLAT 236 Query: 241 IAGTFLFFRQLAGWLAQAVSRRKK-YYEGNTMLWTSSLRFQIRGNTLNLTFISLFSAAIM 299 + GT+L F ++ + V +K +Y G M+ TS L ++I+GN +L I++ SA + Sbjct: 237 VLGTYLLFMFFTVFVLKRVRNKKSAFYNGMKMVTTSQLLYRIKGNAKSLATIAVLSAVTL 296 Query: 300 LLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRSSGHEV--RYHLTQEAI 357 + Y + + P ++E + +++ +++ +EV +Y L + Sbjct: 297 TAVGTSVTMYYNTYMQAKKYHPVSYSYEKKDMELDRKVNEILKEGQNEVIHQYELETVKV 356 Query: 358 VAEPVSDMGPAFENPEYYTPYLLLVSEQTYNGLMQERDPKQILDLQGEEAVTL----AQG 413 V E E L+++ ++N + + + ++ LDL+ E ++G Sbjct: 357 VGEYGDGTSLQSRTTE-------LIAQSSFNTIAKYLN-EETLDLKKNELYAFDGMYSEG 408 Query: 414 SDFAQSYAANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSMVIKPAVLVISDEAY 473 + Y NR+ F ++ A + ++ K+ L ++V+ DE Y Sbjct: 409 KRDSGVY-KNRKATFPIEEVAPVQVKDVQAKNITNL------------YELLVVVPDEVY 455 Query: 474 RSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSSFADVYS---KQIEXXX 530 ++ + + + D ++ L++++ +++E F+D Y+ IE Sbjct: 456 EQAKKTIGSHTVKNIDVKDERNSKVLTEKLKKVISEEDAEGREQFSDFYTIFRSGIETSG 515 Query: 531 XXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDRQMKSVIRKQXXXX 590 S+IYFKQL EA +R +Y +LRK+GV ++MK + KQ Sbjct: 516 LMMFSGIFLGLVFLLATGSIIYFKQLTEAHADRERYIVLRKLGVTKKEMKKAVAKQMRFI 575 Query: 591 XXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVLFYVSSTNVYYKIV 650 G+ H+ F +K L +V + + I GVY +IY+ +Y + Y++IV Sbjct: 576 FFIPLVVGILHTLFALKG--LATVIPYEIAVPLLISI-GVYSVIYIGYYCLTVRSYFRIV 632 Query: 651 NE 652 ++ Sbjct: 633 SK 634 >ref|NP_471553.1| similar to ABC transporter (permease) [Listeria innocua] pir||AI1709 ABC transporter (permease) homolog lin2220 [imported] - Listeria innocua (strain Clip11262) emb|CAC97449.1| lin2220 [Listeria innocua] Length = 646 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 171/673 (25%), Positives = 316/673 (46%), Gaps = 54/673 (8%) Query: 1 MSLLELTVRNVKRNFRLYSIYLFSMIAGVIIQFTFTSLMYNKDIMDALQNRANFQTGVGI 60 M+L +L +N++ NF Y +Y SMI ++I FTF L + ++ + + T Sbjct: 1 MTLFDLAKKNIRHNFVHYFLYFASMIFSIMIYFTFLVLSKDPSVVARIDQSSKLSTAFSS 60 Query: 61 ASXXXXXXXXXXXXYANSFFMKQRKKEFGMYLLYGLNERQITRMVFYETLIMSAISLFTG 120 +S Y+N+FF ++RKKE G+Y L GL +++I RM+FYE IM +L G Sbjct: 61 SSVILLIFVAIFILYSNNFFTRKRKKEIGLYSLLGLRKKEIGRMLFYENFIMGLGALVIG 120 Query: 121 ILIGGLLSKLFGMLLMDLMNYNQVISLSFPMPSIAATIGVFLLLAMIISVQSYIMLNRVQ 180 IL G LLSK+F +L++L+N + + +F ++ T VF+++ + S Y ++ R Sbjct: 121 ILAGTLLSKIFVTILLNLINLDSIGGFAFSWGAVLQTSIVFIIITLFTSFTGYRIIYRTT 180 Query: 181 LTELFHAKQKMETPVRVSSAWAMIAVLLLGMAFALIS---SGKGSVFWQDYATVSMIAVT 237 L +LFH++ K E + S A+++++L+ + + + K S++ Q ++ + + Sbjct: 181 LLDLFHSESKREKSPKPSFILALLSIVLIALGYFIAGQPLDSKNSLWAQLGFSIGALVIL 240 Query: 238 IGIIAGTFLFFRQLAGWLAQAVSRRKK-YYEGNTMLWTSSLRFQIRGNTLNLTFISLFSA 296 +I GT LF +L + K+ +Y+G+ ++ TS L F+I N L IS+ SA Sbjct: 241 ASVIIGTSLFITFFLPYLLTKLRNNKRIFYKGSNIISTSQLNFRISSNAKTLIIISILSA 300 Query: 297 AIMLLLSFMTINYKVQFEAVGRNLPNDIAFESLASSTNNRIDSLIRS----SGHEVRYHL 352 + + ++ Y + + P+ +FE S D ++++ S H V Y Sbjct: 301 TTLSAIGTISSIYYQANTSANTSAPS--SFEYQVPSDKALNDKIVKTAESDSDHPVEYEQ 358 Query: 353 --TQEAIVAEPVSDMGPAFENPEYYTPYLLLVSEQTYNGLMQER-DPKQILDLQGEEAVT 409 T + AE ++ E + ++S+ YN L++++ +P+ +L+ EA Sbjct: 359 KSTYYTVKAEGTRPDFVEYDINEGFP----VISQSEYNSLVKKQGNPENAANLKANEAQM 414 Query: 410 L--------AQGSDFAQSY--AANRQPEFKVKTDAETAFRIIEKKDYAYLGWSSDPVRSM 459 + AQ + Y A+ +P ++K+ + + P+ S+ Sbjct: 415 VLSVTYDEKAQKQMIGEKYTLASPSKPNVEIKSVVQNS-----------------PIASV 457 Query: 460 VIKPAVLVISDE--AYRSLREHADKKSFEIYGIADAGRAEELSKQVHAIVTETPGAYYSS 517 + +LV+ DE A ++ ++ E + DA +A++L K++ ++V + S Sbjct: 458 M---GLLVLPDERVAMIGTDKNIPSQTVESITVKDAKQAQDLDKKMQSLVPKDSNLI--S 512 Query: 518 FADVYSKQIEXXXXXXXXXXXXXXXXXXXXXSVIYFKQLREATDERMQYTILRKMGVDDR 577 +A Y + I S+IYFKQL EA ++ + IL+K+G+ + Sbjct: 513 YAATYQQIITVTGVLLFIGMFIGFVFLAATGSIIYFKQLTEAYNDIGTFDILKKIGLTKK 572 Query: 578 QMKSVIRKQXXXXXXXXXXXGVCHSWFIIKYYILDSVQGFTGLTATVWGIMGVYFLIYVL 637 ++ ++ KQ G+ HS F + I S LT V GVY L+Y++ Sbjct: 573 DIRKILAKQLLVVFLIPLVIGIAHSSFAL---IGLSHMLALDLTLPVVISTGVYTLMYIV 629 Query: 638 FYVSSTNVYYKIV 650 +Y + N Y IV Sbjct: 630 YYFVTLNSYTNIV 642 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 801,350,957 Number of extensions: 29172350 Number of successful extensions: 110483 Number of sequences better than 1.0e-05: 88 Number of HSP's gapped: 110314 Number of HSP's successfully gapped: 90 Length of query: 654 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 522 Effective length of database: 398,844,510 Effective search space: 208196834220 Effective search space used: 208196834220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)