BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0146.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471552.1| similar to ABC transporter (ATP-binding protein... 282 4e-75 ref|NP_465638.1| similar to ABC transporter (ATP-binding protein... 281 1e-74 ref|NP_834531.1| ABC transporter ATP-binding protein [Bacillus c... 268 6e-71 ref|NP_658862.1| ABC_tran, ABC transporter [Bacillus anthracis A... 266 3e-70 ref|NP_981278.1| ABC transporter, ATP-binding protein [Bacillus ... 266 3e-70 >ref|NP_471552.1| similar to ABC transporter (ATP-binding protein) [Listeria innocua] pir||AH1709 ABC transporter (ATP-binding protein) homolog lin2219 [imported] - Listeria innocua (strain Clip11262) emb|CAC97448.1| lin2219 [Listeria innocua] Length = 255 Score = 282 bits (722), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 136/249 (54%), Positives = 182/249 (73%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTTA----VLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV+Q +N+ K YG+ L+NI + I+ GEFT +MGPSG+GKSTL+NVLSTID+ Sbjct: 1 METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKP 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T GE+ FR++++GFIFQDYNLLDTLT +ENI+LPL+L + V+E Sbjct: 61 TSGEIMISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ME+ L I I EIL KYPSE+SGGQKQR A++RAIIT+PS++FADEPTGALDS+SA Sbjct: 121 MEEKLANISEKFGITEILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE L +LN TIMMVTHD +AAS+CKR++F++DG + EIY G +T+K F+ +I Sbjct: 181 TNLLESLRDLNEQDKATIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKI 240 Query: 237 LETQSLMGG 245 L+ + +GG Sbjct: 241 LDVLAKLGG 249 >ref|NP_465638.1| similar to ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AB1339 ABC transporter (ATP-binding protein) homolog lmo2114 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00192.1| lmo2114 [Listeria monocytogenes] Length = 255 Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 135/249 (54%), Positives = 183/249 (73%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTTA----VLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV+Q +N+ K YG+ L+NI + I+ GEFT +MGPSG+GKSTL+NVLSTID+ Sbjct: 1 METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSGAGKSTLLNVLSTIDKP 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T G++ FR++++GFIFQDYNLLDTLT +ENI+LPL+L + V+E Sbjct: 61 TSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLTIRENIILPLALAKRPVKE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ME+ L I I EIL KYPSE+SGGQKQR A++RAIIT+PS++FADEPTGALDS+SA Sbjct: 121 MEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAIITSPSLIFADEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE L +LN +TIMMVTHD +AAS+CKR++F++DG + EIY G +T+K F+ +I Sbjct: 181 TNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIKDGELYTEIYRGTKTRKEFFQKI 240 Query: 237 LETQSLMGG 245 L+ + +GG Sbjct: 241 LDVLAKLGG 249 >ref|NP_834531.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP11732.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 256 Score = 268 bits (686), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 127/249 (51%), Positives = 176/249 (70%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTT----AVLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV++ +N+ K Y T A LK I+L ++ GEF +MGPSGSGK+TL+NVLSTID Sbjct: 1 MKTVLEAKNIEKVYDTGGNKFAALKGINLQVKEGEFVGIMGPSGSGKTTLLNVLSTIDNA 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T GE+ FR++ +GFIFQDYNLLDTLT KENI LPL+L +VK E Sbjct: 61 TNGEILIDGKDIVKMNDDKLALFRRDHLGFIFQDYNLLDTLTVKENIALPLALSKVKASE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ++ +L I + I+ IL ++P ++SGGQKQR A++RAI+TNPS++F DEPTGALDS+SA Sbjct: 121 IDRRVLEISKKFGIDHILSQFPYQVSGGQKQRCAASRAIVTNPSMIFGDEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE + LN +TI+MVTHD +AASYCKRVIF++DG + E++ G+ T+K F+ +I Sbjct: 181 TDLLESMKSLNEYDNSTILMVTHDAFAASYCKRVIFIKDGELYKELHRGESTRKQFFQKI 240 Query: 237 LETQSLMGG 245 ++ S + G Sbjct: 241 VDVMSSISG 249 >ref|NP_658862.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_847275.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP28761.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 256 Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/249 (50%), Positives = 176/249 (70%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTT----AVLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV++ +N+ K Y T A LK I+L ++ GEF +MGPSGSGK+TL+NVLSTID Sbjct: 1 MKTVLEAKNIEKVYDTGGNKFAALKGINLQVKEGEFVGIMGPSGSGKTTLLNVLSTIDNA 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T GE+ FR++ +GFIFQDYNLLDTLT KENI LPL+L +VK E Sbjct: 61 TNGEILIDGKDIVKMNDDKLALFRRDHLGFIFQDYNLLDTLTVKENIALPLALSKVKANE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ++ +L I + I+ IL ++P ++SGGQKQR A++RAI+TNPS++F DEPTGALDS+SA Sbjct: 121 IDRRVLEISKKFGIDHILSQFPYQVSGGQKQRCAASRAIVTNPSMIFGDEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE + LN +TI+MVTHD +AASYCKRVIF++DG + E++ G+ T+K F+ ++ Sbjct: 181 TDLLESMKSLNEYDNSTILMVTHDAFAASYCKRVIFIKDGELYKELHRGELTRKQFFQQV 240 Query: 237 LETQSLMGG 245 ++ S + G Sbjct: 241 VDVMSSISG 249 >ref|NP_981278.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS43886.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 256 Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 126/249 (50%), Positives = 176/249 (70%), Gaps = 4/249 (1%) Query: 1 MQTVIQTQNLSKNYGTT----AVLKNIDLMIQSGEFTAVMGPSGSGKSTLMNVLSTIDRF 56 M+TV++ +N+ K Y T A LK I+L ++ GEF +MGPSGSGK+TL+NVLSTID Sbjct: 1 MKTVLEAKNIEKVYDTGGNKFAALKGINLQVKEGEFVGIMGPSGSGKTTLLNVLSTIDNA 60 Query: 57 TGGEVWXXXXXXXXXXXXXXRQFRQERMGFIFQDYNLLDTLTAKENILLPLSLRRVKVEE 116 T GE+ FR++ +GFIFQDYNLLDTLT KENI LPL+L +VK E Sbjct: 61 TNGEILIDGKDIVKMNDDKLALFRRDHLGFIFQDYNLLDTLTVKENIALPLALSKVKASE 120 Query: 117 MEDLLLPIVRALNIEEILHKYPSELSGGQKQRVASARAIITNPSIVFADEPTGALDSRSA 176 ++ +L I + I+ IL ++P ++SGGQKQR A++RAI+TNPS++F DEPTGALDS+SA Sbjct: 121 IDRRVLEISKKFGIDHILSQFPYQVSGGQKQRCAASRAIVTNPSMIFGDEPTGALDSKSA 180 Query: 177 TQMLEQLAELNGTFGTTIMMVTHDPYAASYCKRVIFLRDGGIVNEIYAGDQTQKAFYDRI 236 T +LE + LN +TI+MVTHD +AASYCKRVIF++DG + E++ G+ T+K F+ ++ Sbjct: 181 TDLLESMKSLNEYDNSTILMVTHDAFAASYCKRVIFIKDGELYKELHRGELTRKQFFQQV 240 Query: 237 LETQSLMGG 245 ++ S + G Sbjct: 241 VDVMSSISG 249 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.135 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 322,167,457 Number of extensions: 11617607 Number of successful extensions: 101652 Number of sequences better than 1.0e-05: 18975 Number of HSP's gapped: 81752 Number of HSP's successfully gapped: 19874 Length of query: 248 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 126 Effective length of database: 425,995,500 Effective search space: 53675433000 Effective search space used: 53675433000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)