BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0135.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_800529.1| conserved hypothetical protein [Vibrio parahaem... 87 3e-16 ref|NP_344574.1| conserved hypothetical protein [Streptococcus p... 82 4e-15 ref|NP_357618.1| Conserved hypothetical protein [Streptococcus p... 82 6e-15 ref|NP_784660.1| unknown [Lactobacillus plantarum WCFS1] >gi|282... 73 4e-12 ref|NP_404097.1| putative phosphoglycerate mutase [Yersinia pest... 62 7e-09 >ref|NP_800529.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] dbj|BAC62362.1| conserved hypothetical protein [Vibrio parahaemolyticus] Length = 175 Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 78/155 (50%) Query: 13 LVRHGEPQWDINEHYKLKGHGRDLVPLTNKGINQVYLTAKDQRLKEAEIIVSSPYPRALQ 72 VRHG P + + + + +D PL +++++ + +A+ I+ SPY RALQ Sbjct: 5 FVRHGVPDFSLADERCMTQLEKDYAPLDRAYLSELHQKLTNAVFDDAQAIICSPYTRALQ 64 Query: 73 TAAILSKELGLEIMVEFDLREWQPDLTFEYDSLERLKELGDDYDANHGVYPPGINKLWET 132 TA IL++ G E+ VE DLREW+ D Y SL +Y + P ++ +E Sbjct: 65 TAEILNRRHGFELFVEHDLREWRADTAGGYISLAERDRRWHEYRELLKLRLPMSDERYEH 124 Query: 133 KELLKNRMEKVIDKYLEFQKVIITGHGMAFRTLVG 167 LK R V+++Y ++ KVI+ H F L G Sbjct: 125 VTALKARTMAVLERYRQYDKVIVVSHFNVFEALQG 159 >ref|NP_344574.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] pir||E95002 conserved hypothetical protein SP0022 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK74214.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4] Length = 171 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 4/154 (2%) Query: 13 LVRHGEPQWDINEHYKLKGHGRDLVPLTNKGINQVYLTAKDQRLKEAEIIVSSPYPRALQ 72 VRHGEP + E G G DL PL+ G QV +K+ L AEIIVSS RAL+ Sbjct: 5 FVRHGEPDYRELEERSYIGFGIDLAPLSEMGRQQVQKLSKNPLLSSAEIIVSSAVTRALE 64 Query: 73 TAAILSKELGLEIMVEFDLREWQPDLTFEYDSLERLKELGDDYDANHGVYPPGINKLWET 132 TA+ + GL + VE L EWQ T +E + + N G P +ET Sbjct: 65 TASYVVCATGLPLRVEPLLHEWQVYKT----GIENFETARRLFLENKGELLPNSPIQYET 120 Query: 133 KELLKNRMEKVIDKYLEFQKVIITGHGMAFRTLV 166 +K+R + + KY E Q V++ H M R V Sbjct: 121 ATEMKSRFLECMSKYREHQTVVVVAHRMLMRQFV 154 >ref|NP_357618.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] pir||H97874 conserved hypothetical protein spr0024 [imported] - Streptococcus pneumoniae (strain R6) gb|AAK98828.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] Length = 192 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 74/154 (48%), Gaps = 4/154 (2%) Query: 13 LVRHGEPQWDINEHYKLKGHGRDLVPLTNKGINQVYLTAKDQRLKEAEIIVSSPYPRALQ 72 VRHGEP + E G G DL PL+ G QV +K+ L AEIIVSS RAL+ Sbjct: 26 FVRHGEPDYRELEERSYIGFGIDLAPLSEMGRQQVQKLSKNPLLSSAEIIVSSAVTRALE 85 Query: 73 TAAILSKELGLEIMVEFDLREWQPDLTFEYDSLERLKELGDDYDANHGVYPPGINKLWET 132 TA+ + GL + VE L EWQ T +E + + N G P +ET Sbjct: 86 TASYVVCATGLPLRVEPLLHEWQVYKT----GIENFETARRLFLENKGELLPNSPIQYET 141 Query: 133 KELLKNRMEKVIDKYLEFQKVIITGHGMAFRTLV 166 +K+R + + KY E Q V++ H M R V Sbjct: 142 ATEMKSRFLECMSKYREHQTVVVVAHRMLMRQFV 175 >ref|NP_784660.1| unknown [Lactobacillus plantarum WCFS1] emb|CAD63507.1| unknown [Lactobacillus plantarum WCFS1] Length = 176 Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 2/156 (1%) Query: 10 QFYLVRHGEPQWDINEHYKLKGHGRDLVPLTNKGINQVYLTAKDQRLKEAEIIVSSPYPR 69 + YL+RH EP ++ L G GR+L LT++GI A+ + ++I+SSPY R Sbjct: 2 KVYLIRHSEPTYEQVTTAGLTGFGRELGSLTDRGIMLAQQCAQQPLFAQVQLILSSPYTR 61 Query: 70 ALQTAAILSKELGLEIMVEFDLREWQPDLT-FEYDSLERLKELGDDYDANHGVYPPGINK 128 ALQTA + + + + VE L EW PD T D+ E+ Y + G + Sbjct: 62 ALQTALEIVRFNDIPLKVELGLHEWLPDDTGSRTDTDEQAATAYKLYRQHAGKRTAASPR 121 Query: 129 LWETKELLKNRMEKVIDKY-LEFQKVIITGHGMAFR 163 +E+ +K R+ ++KY + + + HG R Sbjct: 122 PYESAAEMKARVLATLNKYAVSYDCIACVTHGEVMR 157 >ref|NP_404097.1| putative phosphoglycerate mutase [Yersinia pestis] ref|NP_671021.1| phosphoglyceromutase 2 [Yersinia pestis KIM] ref|NP_994999.1| putative phosphoglycerate mutase [Yersinia pestis biovar Mediaevails str. 91001] sp|Q8ZIP0|GPMB_YERPE Probable phosphoglycerate mutase gpmB (Phosphoglyceromutase) (PGAM) pir||AD0056 probable phosphoglycerate mutase (EC 5.4.2.1) [imported] - Yersinia pestis (strain CO92) emb|CAC89311.1| putative phosphoglycerate mutase [Yersinia pestis CO92] gb|AAM87272.1| phosphoglyceromutase 2 [Yersinia pestis KIM] gb|AAS63876.1| putative phosphoglycerate mutase [Yersinia pestis biovar Mediaevails str. 91001] Length = 215 Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 17/174 (9%) Query: 8 MTQFYLVRHGEPQWDINEHYKLKGHGRDLVPLTNKGINQVYLTAKDQRLKEAEIIVSSPY 67 M Q YLVRHGE W N +++G PLT GI Q +L A+ R + I+SS Sbjct: 1 MLQVYLVRHGETLW--NAARRIQGQSDS--PLTEIGIRQAHLVAQRVRNQGITHIISSDL 56 Query: 68 PRALQTAAILSKELGLEIMVEFDLREWQPDLTFEYDSLERLKELGDDY-----DANHGVY 122 R QTA I++ GL ++ + LRE + E ++ L + + + G Sbjct: 57 GRTQQTAKIIADACGLTMVTDPRLRELNMGV-LENRPIDSLTPEEEQWRKQMVNGTEGAR 115 Query: 123 PPGINKLWETKELLKNRMEKVIDKYLEF---QKVIITGHGMAFRTLVGEVGEIP 173 P + E L RM +D LE K ++ HGMA L+ + +P Sbjct: 116 IPEGESMTE----LGRRMHAALDSCLELPAGSKPLLVSHGMALGCLLSTLLGLP 165 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 301,822,580 Number of extensions: 12249920 Number of successful extensions: 32232 Number of sequences better than 1.0e-05: 24 Number of HSP's gapped: 32301 Number of HSP's successfully gapped: 24 Length of query: 189 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 70 Effective length of database: 434,140,797 Effective search space: 30389855790 Effective search space used: 30389855790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)