BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0133.p
         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_821962.1| hypothetical protein [Streptomyces avermitilis ...    70   2e-11
ref|NP_104819.1| weak similarity to chloramphenicol phosphotrans...    64   1e-09
ref|NP_822052.1| putative chloramphenicol 3-O phosphotransferase...    62   5e-09
gb|EAG68302.1| unknown [environmental sequence]                        55   6e-07

>ref|NP_821962.1| hypothetical protein [Streptomyces avermitilis MA-4680]
 dbj|BAC68497.1| hypothetical protein [Streptomyces avermitilis MA-4680]
          Length = 218

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 58/104 (55%)

Query: 2   GLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQYD 61
           G N++VD  +    R  D LDL     T+ VGV C   EL RRE  RGDR+ GLA  QY 
Sbjct: 96  GNNLVVDYPLSRRWRLLDLLDLLVPEDTVLVGVRCPLPELERRESERGDRQPGLAAMQYG 155

Query: 62  KIYSFTEYDLEVNTGELSPTECAEKILSFIKSDQDYSAFKKLSK 105
            ++S   +DL++++   +P ECA +I  F+      +AF+ L +
Sbjct: 156 AVHSHELHDLDIDSSLHTPAECALRIRDFLPDRPRPTAFETLRR 199


>ref|NP_104819.1| weak similarity to chloramphenicol phosphotransferase
           [Mesorhizobium loti MAFF303099]
 dbj|BAB50605.1| weak similarity to chloramphenicol phosphotransferase
           [Mesorhizobium loti]
          Length = 239

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 2   GLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQYD 61
           G ++IVD V+ N +  +D +DL        VGV+   E L  RE  R DR  GLA  QY+
Sbjct: 149 GNDLIVDDVLCNGE-LSDCVDLLSAFDFHLVGVMAPLEVLEAREARRADRLPGLARWQYE 207

Query: 62  KIYSFTEYDLEVNTGELSPTECAEKI 87
           ++++   YDLEV+T + +P ECA +I
Sbjct: 208 RVHAGISYDLEVDTSQSTPLECARRI 233


>ref|NP_822052.1| putative chloramphenicol 3-O phosphotransferase [Streptomyces
           avermitilis MA-4680]
 dbj|BAC68587.1| putative chloramphenicol 3-O phosphotransferase [Streptomyces
           avermitilis MA-4680]
          Length = 176

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 2   GLNVIVDTV----IDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLAN 57
           G  VIVD V     D+ +R+   L    D   L+VGV C       RE  RGDR IG+A 
Sbjct: 85  GARVIVDEVFLGGADSQQRWQKALR---DLRVLWVGVRCDGAVAAGREIARGDRVIGMAA 141

Query: 58  SQYDKIYSFTEYDLEVNTGELSPTECAEKILSFIK 92
           SQ D ++    YDLEV+T      ECA  I + ++
Sbjct: 142 SQADVVHRGVVYDLEVDTTHAESMECARAIATHVR 176


>gb|EAG68302.1| unknown [environmental sequence]
          Length = 205

 Score = 55.1 bits (131), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 2   GLNVIVDTVIDNDKRFNDFLDLFFDHPTLFVGVLCSKEELTRREQIRGDREIGLANSQYD 61
           G NVI+D ++      +D++ +     T FVGV CS E +  RE  R  R  G A S Y+
Sbjct: 100 GTNVIIDDLLFKRAYLDDYVAVLDPARTWFVGVKCSLEIVKAREAKRPGRFPGTATSHYE 159

Query: 62  KIYSFTE-YDLEVNTGELSPTECAEKIL 88
           +++   E YDLEV+T   S  + A +I+
Sbjct: 160 QVHEHGESYDLEVDTSAASARQVAMQII 187


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 163,052,788
Number of extensions: 6235246
Number of successful extensions: 14533
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 14532
Number of HSP's successfully gapped: 4
Length of query: 111
Length of database: 757,237,578
Length adjustment: 77
Effective length of query: 34
Effective length of database: 548,174,955
Effective search space: 18637948470
Effective search space used: 18637948470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)