BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0126.p
         (127 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_562085.1| conserved hypothetical protein [Clostridium per...    61   7e-09

>ref|NP_562085.1| conserved hypothetical protein [Clostridium perfringens]
 dbj|BAB80875.1| conserved hypothetical protein [Clostridium perfringens str. 13]
          Length = 214

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 8/124 (6%)

Query: 5   LVGPLINWI----HPFIANMNLADLSLFIKIVIVILANLCFSITYVLLMNFGNGMYAIDA 60
           +VGP I+ I    H F  + +L++ +LF K VIV ++ +  +I +  L++   G+   D 
Sbjct: 85  VVGPTIDAIMGILHRFGLDTSLSNFNLFTKCVIVAVSCIIIAIGFSFLVSTELGVAPNDL 144

Query: 61  VLRYMESKFGLRYAFGRIGADALFLSSGFLFGGIVGIGTVIAFALTGPGTVL----LEKM 116
           V   +  K   +Y + RIG D  FL  G+L  G+VG+GT+IA   TGP         EK+
Sbjct: 145 VPLIIRDKTNFQYRWIRIGLDLSFLVVGYLLAGVVGLGTIIAVLFTGPAIQFFMPPCEKI 204

Query: 117 LFKF 120
           + KF
Sbjct: 205 VHKF 208


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.335    0.151    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 177,577,507
Number of extensions: 6518359
Number of successful extensions: 30038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 30054
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 757,237,578
Length adjustment: 90
Effective length of query: 37
Effective length of database: 512,878,668
Effective search space: 18976510716
Effective search space used: 18976510716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 120 (50.8 bits)