BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0122.p
         (86 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_464440.1| similar to PTS system, IIB component [Listeria ...    56   2e-07
ref|NP_470254.1| similar to PTS system, IIB component [Listeria ...    56   2e-07

>ref|NP_464440.1| similar to PTS system, IIB component [Listeria monocytogenes
          EGD-e]
 pir||AB1189 PTS system, IIB component homolog lmo0914 [imported] - Listeria
          monocytogenes (strain EGD-e)
 emb|CAC98992.1| lmo0914 [Listeria monocytogenes]
          Length = 101

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 46/63 (73%)

Query: 20 ARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDGEAALND 79
          A  E++I+  I++ID LL+GPHLAY++D++++   D DV V ++  + Y TL+GE AL+ 
Sbjct: 36 AASESQIDERINEIDYLLIGPHLAYMLDDLKQKVADKDVLVSIIPQATYGTLNGEKALDL 95

Query: 80 LLS 82
          +L+
Sbjct: 96 ILN 98


>ref|NP_470254.1| similar to PTS system, IIB component [Listeria innocua]
 pir||AB1547 PTS system, IIB component homolog lin0914 [imported] - Listeria
          innocua (strain Clip11262)
 emb|CAC96146.1| lin0914 [Listeria innocua]
          Length = 101

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 46/63 (73%)

Query: 20 ARGEAEIENYIDDIDALLVGPHLAYIVDEIEELTRDSDVKVLLMKPSYYSTLDGEAALND 79
          A  E++I+  I++ID LL+GPHLAY++D++++   D DV V ++  + Y TL+GE AL+ 
Sbjct: 36 AASESQIDERINEIDYLLIGPHLAYMLDDLKQKVADKDVLVSVIPQATYGTLNGEKALDL 95

Query: 80 LLS 82
          +L+
Sbjct: 96 ILN 98


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.139    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 100,454,081
Number of extensions: 3290678
Number of successful extensions: 10231
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10236
Number of HSP's successfully gapped: 2
Length of query: 86
Length of database: 757,237,578
Length adjustment: 55
Effective length of query: 31
Effective length of database: 607,907,133
Effective search space: 18845121123
Effective search space used: 18845121123
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)