BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0121.p (620 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_470258.1| similar to transcription antiterminator BglG fa... 200 8e-50 ref|NP_464444.1| similar to transcription antiterminator BglG fa... 187 6e-46 ref|NP_391739.1| transcriptional regulator (antiterminator) [Bac... 184 5e-45 ref|NP_977204.1| transcription antiterminator, BglG family [Baci... 167 6e-40 ref|NP_830596.1| Transcription antiterminator, BglG family [Baci... 165 3e-39 >ref|NP_470258.1| similar to transcription antiterminator BglG family [Listeria innocua] pir||AG1547 transcription antiterminator BglG family homolog lin0919 [imported] - Listeria innocua (strain Clip11262) emb|CAC96151.1| lin0919 [Listeria innocua] Length = 632 Score = 200 bits (509), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 148/590 (25%), Positives = 295/590 (50%), Gaps = 28/590 (4%) Query: 1 MKTQYIDLIQYLSSQNNKWVSSQSLASKYDVSKRTIKSYISEINAIHHGLILSSNKGYKV 60 M TQ +++ YL Q +KWV+S LA + RTI++ I +IN LI S+ +GY Sbjct: 1 MDTQK-EILAYLYKQEDKWVTSNELADFCKCTTRTIRNNIYKINEATPNLINSTKQGY-- 57 Query: 61 DTHQVNRFLTSEQKAIPQTQPERMAYILKKLVQTNEPIYIYDLSDALFISESTLRLDLKL 120 Q+NR + + +A + +L+ + + + + ++DL+D LFISE TL+ D++ Sbjct: 58 ---QINRAIHFDFQAESDVSERKSKLLLELIKNSTKGVDLFDLADILFISEVTLKKDIQQ 114 Query: 121 VKEKLTKNNLELQLIKDHVRLQGKEKDKRKLMSSILYEEANGSFIDIDKIKGVYKEL--- 177 +K +L + N+++ + K+ ++L GKE+ KRK M S+LYEE + IKG +E+ Sbjct: 115 LKNELKEANVQIVIDKNQIKLVGKERAKRKYMISLLYEEGGYR----ESIKGHIQEMLEI 170 Query: 178 -NIDYIREVVIGTFSAHHFFTNDYYLTDVIIHITIALDRMKHXXXXXXXXXXXXXXYSMD 236 +ID ++ +V + TN Y + ++++H I++ R++ +S + Sbjct: 171 VSIDKLQSIVKEVLAEEAITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKE 230 Query: 237 NNAFLIAKEIASKLESYFHVTYPEEEIADLAILISC--NGTNVNFTQIEVSDLENIAGID 294 + I+K+IA L + + + E E L +L N N Q E LE Sbjct: 231 ---YEISKKIAGILSEEYQIHFSEAETKQLGLLYVGLQNEQAANANQAE---LEQFVDKK 284 Query: 295 CIDLVSEIAVDLDKYYYISIADSDFITRFTLHVKNLLMRLKNHHSTKNPLTNSIKRECPL 354 I+ + + ++++ Y I + + + +HV++L R + T+N IK P+ Sbjct: 285 IIEALKIVLTNVEEMYLIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPV 344 Query: 355 IYDCAVHASHVIKERTGYTISDDEIAYLAFHLGYAIELQRQSNVKISCTVLFPLYYNMNV 414 +D AV+ S +++E+ ++DEI+++A H+G +E + + +K+ +L Y+++ Sbjct: 345 TFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIKLEIGILVDDYHDLKT 404 Query: 415 QIINKLQQYFGDDISIHSIVTDESDLSHATSDFIISSAQLHKIPEVPYVVITPFFIESDR 474 ++ KL+ F +D +I I + D + D I+++ + + + + I P D Sbjct: 405 NMLKKLRTLFENDATIEVIENERCDEHY---DIILTTNRDTALEKAGSIFIHPLLTAKDI 461 Query: 475 EKVSDKIFELKEQKKKNQFKINLESFLDERHFCSSTKRSD--KEDVLRFICQIMNQDGYT 532 +K++ +I K+ + N ++ ++ + + S+ + + + M + + Sbjct: 462 KKITSRIHTKKKMLENNLLGQQIDRYIVPSLYSNQIDPSELTPQKIREQMVSKMEKAAFV 521 Query: 533 DDDFFCKIMEREAMSSTAF-GQVAIPHAIKMDSRKTGMFIYLNPNGIQWD 581 DF K+ +RE M+ T+F +AIPH+IK D+ ++G+ + I W+ Sbjct: 522 KPDFKEKVEKREQMAPTSFPSGIAIPHSIKNDAIRSGVSMMTLQEPIYWN 571 >ref|NP_464444.1| similar to transcription antiterminator BglG family [Listeria monocytogenes EGD-e] pir||AF1189 transcription antiterminator BglG family homolog lmo0918 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98996.1| lmo0918 [Listeria monocytogenes] Length = 632 Score = 187 bits (476), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 147/592 (24%), Positives = 302/592 (51%), Gaps = 32/592 (5%) Query: 1 MKTQYIDLIQYLSSQNNKWVSSQSLASKYDVSKRTIKSYISEINAIHHGLILSSNKGYKV 60 M TQ +++ YL Q NKWV+S LA+ + + RTI++ I +IN + LI S+ +GY++ Sbjct: 1 MDTQK-EILAYLHKQENKWVTSNELAAFCECTTRTIRNNIYKINEVTPNLINSTKQGYQI 59 Query: 61 DTHQVNRFLTSEQKAIPQTQPERMAYILKKLVQ-TNEPIYIYDLSDALFISESTLRLDLK 119 + + F SE ER + +L +L++ + + + +++L+D L+ISE TL+ D++ Sbjct: 60 NLNIPFEF-QSESDV-----TERKSKLLLELIKNSTKGVDLFELADILYISEVTLKKDIQ 113 Query: 120 LVKEKLTKNNLELQLIKDHVRLQGKEKDKRKLMSSILYEEANGSFIDIDKIKGVYKELNI 179 +K +L + ++++ + KD ++L GKE+ KRK M S+LYEE +I+ + + ++I Sbjct: 114 QLKNELKEADVKIVISKDRIKLIGKERAKRKYMISLLYEEGGYRESIKSRIQEMIEFVSI 173 Query: 180 DYIREVVIGTFSAHHFFTNDYYLTDVIIHITIALDRMKHXXXXXXXXXXXXXXYSMDNNA 239 D ++ +V + TN Y + ++++H I++ R++ +S + Sbjct: 174 DKLQNIVKEVLAQESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKE--- 230 Query: 240 FLIAKEIASKLESYFHVTYPEEEIADLAILISC--NGTNVNFTQIEVSDLENIAGIDCID 297 + I+K+IA L + + + E E L +L N + N E+ + ID + Sbjct: 231 YEISKKIAKILSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIDALK 290 Query: 298 LVSEIAVDLDKYYYISIADSDFITRFTLHVKNLLMRLKNHHSTKNPLTNSIKRECPLIYD 357 +V ++++ Y I + + + +HV++L R + T+N IK P+ +D Sbjct: 291 IV---LANVEETYLIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPVTFD 347 Query: 358 CAVHASHVIKERTGYTISDDEIAYLAFHLGYAIELQRQSNVKISCTVLFPLYYNMNVQII 417 AV+ S +++E+ ++DEI+++A H+G +E + + +++ +L Y+++ ++ Sbjct: 348 IAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLVDDYHDLRTNML 407 Query: 418 NKLQQYFGDDISIHSIVTDESDLSHATSDFIISSAQLHKIPEVPYVVITPFFIESDREKV 477 KL+ F ++ +I I E++ D I+++ + + + + I P D +K+ Sbjct: 408 KKLRARFDNEATIELI---ENEDYEENFDIILTTNRDVALEKAGSIFIHPLLTTKDIKKI 464 Query: 478 SDKIFELKEQKKKNQFKINLESFLDERHFCSS--TKRSDKED-----VLRFICQIMNQDG 530 + +I Q KK + N+ +R+ S + + D + + + M + Sbjct: 465 TSRI-----QTKKKILENNIRGQQIDRYIVRSLYSNQIDPSELTPAKIREQMISKMEKQT 519 Query: 531 YTDDDFFCKIMEREAMSSTAF-GQVAIPHAIKMDSRKTGMFIYLNPNGIQWD 581 + +F K+ +RE M+ T+F +AIPH+IK D+ ++G+ I I W+ Sbjct: 520 FVTPEFKEKVEKREQMAPTSFPSGIAIPHSIKNDALQSGVSIMTLQEPIYWN 571 >ref|NP_391739.1| transcriptional regulator (antiterminator) [Bacillus subtilis] sp|P46321|LICR_BACSU Probable licABCH operon regulator pir||H69651 lichenan operon transcription antiterminator licR - Bacillus subtilis emb|CAA90284.1| putative cel operon regulator [Bacillus subtilis] dbj|BAA11742.1| cel operon regulator [Bacillus subtilis] emb|CAB15886.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 641 Score = 184 bits (467), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 153/584 (26%), Positives = 280/584 (47%), Gaps = 41/584 (7%) Query: 20 VSSQSLASKYDVSKRTIKSYISEINAI--HHGLILSSNKG----YKVDTHQVNRFLTSEQ 73 V+S A++ +V+ RT+++ I E+ + HG + S +G ++D QV R L ++ Sbjct: 20 VTSSFFAAQLNVTTRTVRNDIKELQGVLSGHGAFVQSVRGSGYKLRIDDEQVFRTLLQDE 79 Query: 74 ----KAIPQTQPERMAYILKKLVQTNEPIYIYDLSDALFISESTLRLDLKLVKEKLTKNN 129 K +P ERMAY++K+L+ + + + +L++ LFIS+STL+ DLK VK++L Sbjct: 80 FQQKKGLPVLPEERMAYLMKRLLLADHYLKLDELAEELFISKSTLQTDLKEVKKRLLPYR 139 Query: 130 LELQLIKDH-VRLQGKEKDKRKLMSSILYEEANGSFIDIDKIKGVYKELNIDYIREVVIG 188 + ++ ++ +L+G E R M+ + +E +++ + + I+ IR ++ Sbjct: 140 IVMETRPNYGFKLRGDEVQMRYCMAEYIVDERETEIDVLNEKADILPKEEIEIIRSAILK 199 Query: 189 TFSAHHFFTNDYYLTDVIIHITIALDRMKHXXXXXXXXXXXXXXYSMDNNAFLIAKEIAS 248 ++ L ++IIHI IA R++ + + + A+ I Sbjct: 200 KMKNDRIPLSNMGLNNLIIHIAIACKRIR--TENYVSLFPKDMDHILHQKEYQAAEAIVK 257 Query: 249 KLESYFHVTYPEEEIADLAI-------LISCNGTNVNFTQIEVSDLENIAGIDCIDLVSE 301 +LES VT+P++E A + + + F+ E +D +A I +D + Sbjct: 258 ELESKLSVTFPKDETAYITMHLLGTKRMTQSQCGEDTFSIEEETDQLTLAMIKAVDRELK 317 Query: 302 IAVDLDKYYYISIADSDFITRFTLHVKNLLMRLKNHHSTKNPLTNSIKRECPLIYDCAVH 361 + + DK I +A LH+K + R + + +NP+ +IK PL ++ + Sbjct: 318 LGILHDKELKIGLA---------LHMKPAISRNRYGMNLRNPMLAAIKEHYPLAFEAGII 368 Query: 362 ASHVIKERTGYTISDDEIAYLAFHLGYAIELQRQSNVKISCTVLFPLYYNMNVQIINKLQ 421 A VIKE+TG I ++EI YLA H G AIE ++ + C ++ + KL+ Sbjct: 369 AGIVIKEQTGIEIHENEIGYLALHFGAAIERKKTESPPKRCIIVCASGAGSAQLLREKLR 428 Query: 422 QYFGDDISIHSIVTDES--DLSHATSDFIISSAQLHKIPEVPYVVITPFFIESDREKVSD 479 +FG + I S +S+ + DF+IS+ + K VP + + +D K+ Sbjct: 429 SHFGKRLDILGTAEYYSLDQMSYESIDFVISTIPIKKELPVPVLKVNTILGGTDFTKIES 488 Query: 480 KIFELKEQKKKNQFKINLESFLDERHFCSSTKRSDKEDVLRFICQIMNQDGYTDDDFFCK 539 + + E++K N++ E F RS KE+V++F+ Q + + G+ D++ Sbjct: 489 ILSD--EKEKANRY------LKKELVFFQEDLRS-KEEVIQFLGQKVVECGFADEEIIDS 539 Query: 540 IMEREAMSSTAFGQ-VAIPHAIKMDSRKTGMFIYLNPNGIQWDT 582 I ERE MS T FG VAIPH + ++ T + I W++ Sbjct: 540 IFEREDMSPTCFGNLVAIPHPLVPQTKTTFWAVCTLKKPIDWES 583 >ref|NP_977204.1| transcription antiterminator, BglG family [Bacillus cereus ATCC 10987] gb|AAS39812.1| transcription antiterminator, BglG family [Bacillus cereus ATCC 10987] Length = 643 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 147/589 (24%), Positives = 272/589 (46%), Gaps = 59/589 (10%) Query: 25 LASKYDVSKRTIKSYISEINAI--HHGLILSSNKG--YKVDTHQVNRF-------LTSEQ 73 LAS+ VS +TI+ I +N I +G + S +G Y+++ Q +F + Sbjct: 24 LASRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQAKKFEEFCVSLFQKQT 83 Query: 74 KAIPQTQPERMAYILKKLVQTNEPIYIYDLSDALFISESTLRLDLKLVKEKLTKNNLELQ 133 + IP + ER+AYIL++++ T+ + + L++ +++S+ST+ L +K V + + L+++ Sbjct: 84 EKIPTSYEERIAYILQRILTTDGYVKLSQLAEEIYVSKSTVNLIMKDVTDICGRYQLQIE 143 Query: 134 LIKDH-VRLQGKEKDKRKLMS---------SILYE--EANGSFIDIDKIKGVYKELNIDY 181 + +R+ G+E R +S + +E E N +++ + +I Sbjct: 144 KRPYYGIRIVGEEFHIRSCLSQYGLPRYDHTPFHEQFEQNDTYLSLP---------HIPL 194 Query: 182 IREVVIGTFSAHHFFTNDYYLTDVIIHITIALDRMKHXXXXXXXXXXXXXXYSMDNNAFL 241 IR V++ + +D + +++IHI IAL R + + + Sbjct: 195 IRSVILKYIEGGTIYLSDIEIDNLVIHIAIALKRCEDQHYMKGLHAEQAEL--IIKKEYT 252 Query: 242 IAKEIASKLESYFHVTYPEEEIADLAILISCNGTNVNFTQIEVSDLENIAGIDCIDLVSE 301 IAKEI LE H+++PEEE+ L + + T V + ++E + G D + Sbjct: 253 IAKEILGDLEKELHLSFPEEEV--LYVTMHLLSTAVT-AKDRYENVEELLGKDLYAFMQH 309 Query: 302 IAVDLDK-----YYYISIADSDFITRFTLHVKNLLMRLKNHHSTKNPLTNSIKRECPLIY 356 I + + +YY D + + F +H+K LL RLK +T+NPL +K+ P + Sbjct: 310 ILFKVAEERNLIFYY----DEELLFGFGVHLKTLLNRLKYKLNTRNPLLAEVKKNYPYAF 365 Query: 357 DCAVHASHVIKERTGYTISDDEIAYLAFHLGYAIELQRQSNVKISCTVLFPLYYNMNVQI 416 + AV +I E TG +I + EI Y+A H G A+ ++ N K C ++ + Sbjct: 366 EIAVLVGDIIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKRCLLVCATGQGSAQLL 425 Query: 417 INKLQQYFGDDISIHSIVT----DESDLSHATSDFIISSAQLHKIPEVPYVVITPFFIES 472 K+ F D + I I DL D IIS+ + VP + + F + Sbjct: 426 KYKILSQFRDKLEIVGITGYYQLKVEDLYKEKIDCIISTMHIPSGLPVPVIKVNSIFDDK 485 Query: 473 DREKVSDKIFELKEQKKKNQFKINLESFLDERHFCSSTKRSDKEDVLRFICQIMNQDGYT 532 + + + ++F +++ ++ E + S KE+V++F+C+ + Y Sbjct: 486 EIQSIGQQLF--------AHVNTSVQQYMKEDLIFLNHSASTKEEVIQFLCEKAAEKNYV 537 Query: 533 DDDFFCKIMEREAMSSTAFGQ-VAIPHAIKMDSRKTGMFIYLNPNGIQW 580 + F+ +MERE S TA G VAIPH +++ S KT + ++W Sbjct: 538 PESFYDSVMERENTSPTAVGNLVAIPHPMQLLSEKTFLMFCTLDKAVEW 586 >ref|NP_830596.1| Transcription antiterminator, BglG family [Bacillus cereus ATCC 14579] gb|AAP07797.1| Transcription antiterminator, BglG family [Bacillus cereus ATCC 14579] Length = 643 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 145/581 (24%), Positives = 269/581 (46%), Gaps = 43/581 (7%) Query: 25 LASKYDVSKRTIKSYISEINAI--HHGLILSSNKG--YKVDTHQVNRF-------LTSEQ 73 LA + VS +TI+ I +N I +G + S +G Y+++ Q +F + Sbjct: 24 LAGRLHVSTKTIQKDIKLLNDILEENGAKIESQRGTGYELEIIQKKKFEDFCVSLFQKQT 83 Query: 74 KAIPQTQPERMAYILKKLVQTNEPIYIYDLSDALFISESTLRLDLKLVKEKLTKNNLELQ 133 + IP + ER+AYIL++++ T + + +L++ +++S+ST+ L +K V + + L+++ Sbjct: 84 EKIPTSYEERIAYILQRVLMTEGYVKLSELAEEMYVSKSTVNLIMKDVTDICGRYKLQIE 143 Query: 134 LIKDH-VRLQGKEKDKRKLMSSI-LYEEANGSFIDIDKIKGVYKEL-NIDYIREVVIGTF 190 + +R+ G+E + R +S L + F + + Y L +I IR +++ Sbjct: 144 KRPYYGIRIVGEEFNIRSCLSQYGLPRYDHTPFHEQFEQTETYLSLPHISLIRSIILKYI 203 Query: 191 SAHHFFTNDYYLTDVIIHITIALDRMKHXXXXXXXXXXXXXXYSMDNNAFLIAKEIASKL 250 + +D + +++IHI IAL R + + + IAK+I L Sbjct: 204 EGGTIYLSDIEIDNLVIHIAIALKRFQSQHYMKGLHAEQSEL--IIKKEYTIAKQILGDL 261 Query: 251 ESYFHVTYPEEEIADLAI-LISCNGTNVNFTQIEVSDLENIAGIDCIDLVSEIAVDLDK- 308 E ++PEEE+ + + L+S T N ++E + G D + I + + Sbjct: 262 EKALKFSFPEEEVLYVTMHLLSTAVTTRN----RYENIEELLGKDIYAFMQHILFKVAEE 317 Query: 309 ----YYYISIADSDFITRFTLHVKNLLMRLKNHHSTKNPLTNSIKRECPLIYDCAVHASH 364 +YY D + + F +H+K LL RLK +T+NPL +K+ P ++ AV Sbjct: 318 RNLIFYY----DEELLFGFGIHLKTLLNRLKYKLNTRNPLLAEVKKNYPYAFEIAVLVGD 373 Query: 365 VIKERTGYTISDDEIAYLAFHLGYAIELQRQSNVKISCTVLFPLYYNMNVQIINKLQQYF 424 +I E TG +I + EI Y+A H G A+ ++ N K C ++ + K+ F Sbjct: 374 IIGEYTGESIPESEIGYIAIHFGGAMSRLQEQNQKKRCLLVCATGQGSAQLLKYKILSQF 433 Query: 425 GDDISIHSIVT----DESDLSHATSDFIISSAQLHKIPEVPYVVITPFFIESDREKVSDK 480 D + I I DL D IIS+ + VP + + F + + + + + Sbjct: 434 RDKLEIVGITGYYQLKVEDLYKEKIDCIISTIHIPSGLPVPVIKVNSIFDDKEIKSIGQR 493 Query: 481 IFELKEQKKKNQFKINLESFLDERHFCSSTKRSDKEDVLRFICQIMNQDGYTDDDFFCKI 540 +F +++ ++ E + S KEDV++F+C+ + Y ++F+ + Sbjct: 494 LF--------THVNTSVQPYIKEDLIFLNYSASTKEDVIQFLCEKAAEKRYVPENFYASV 545 Query: 541 MEREAMSSTAFG-QVAIPHAIKMDSRKTGMFIYLNPNGIQW 580 MERE S TA G VAIPH +++ S +T + + W Sbjct: 546 MERENTSPTAVGNSVAIPHPMQLLSEETFLMFCTLEKAVDW 586 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 862,155,591 Number of extensions: 35476275 Number of successful extensions: 110360 Number of sequences better than 1.0e-05: 62 Number of HSP's gapped: 110232 Number of HSP's successfully gapped: 65 Length of query: 620 Length of database: 757,237,578 Length adjustment: 132 Effective length of query: 488 Effective length of database: 398,844,510 Effective search space: 194636120880 Effective search space used: 194636120880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)