BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0120.p (122 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAC80681.1| putative transcriptional activator [Listeria grayi] 96 3e-19 ref|ZP_00069143.1| COG0789: Predicted transcriptional regulators... 87 1e-16 ref|NP_274322.1| transcriptional regulator, MerR family [Neisser... 87 2e-16 ref|NP_438354.1| transcriptional regulator [Haemophilus influenz... 86 3e-16 ref|ZP_00156027.1| COG0789: Predicted transcriptional regulators... 85 5e-16 >emb|CAC80681.1| putative transcriptional activator [Listeria grayi] Length = 127 Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 45/112 (40%), Positives = 69/112 (61%), Gaps = 1/112 (0%) Query: 4 IFTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMS 63 +FTIG A K G++IG +RFYE KGL+ P RN R+YT+++I+ F+R LR +GM Sbjct: 3 LFTIGTTAKKTGISIGTLRFYEEKGLVSPS-RNASKQRIYTEEQISLPTFIRYLRRSGMP 61 Query: 64 VEEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLER 115 + I Y + G TL ER ++Q QK +L +ID+K+ +L + K+ + Sbjct: 62 INTIHYYLQLAATGPETLSERQAILQRQKANILSEIDEKQHELAAINFKIAK 113 >ref|ZP_00069143.1| COG0789: Predicted transcriptional regulators [Oenococcus oeni MCW] Length = 123 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 72/110 (65%) Query: 5 FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64 FTIGQVA ++ +R+Y+ +GLL V R++ NR++T++E+ WL ++CL+ TGMS+ Sbjct: 10 FTIGQVAQIKTISTYTLRYYDDQGLLPKVFRDKNGNRIFTNEELKWLDMIKCLKNTGMSL 69 Query: 65 EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLE 114 E+IK + D G+ TL RI L+ Q + + D+I++++ L + K++ Sbjct: 70 EKIKTFVDDTYQGSRTLQARILLLNTQAKKIKDNIEEQQTYLNKINQKIK 119 >ref|NP_274322.1| transcriptional regulator, MerR family [Neisseria meningitidis MC58] ref|NP_284233.1| putative transcriptional regulator [Neisseria meningitidis Z2491] pir||E81097 transcription regulator, MerR family NMB1303 [imported] - Neisseria meningitidis (strain MC58 serogroup B, strain Z2491 serogroup A) gb|AAF41678.1| transcriptional regulator, MerR family [Neisseria meningitidis MC58] emb|CAB84745.1| putative transcriptional regulator [Neisseria meningitidis Z2491] Length = 135 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 74/116 (63%) Query: 5 FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64 +T + A K+G++ +RFY+++GLL + R+E NR +TD+++ WL L+CL+ TGMS+ Sbjct: 3 YTTAKAAEKIGISAHTLRFYDKEGLLPNIGRDEYGNRCFTDNDLQWLGLLQCLKNTGMSL 62 Query: 65 EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERYYRGE 120 ++IK++ + G T+ ER+ L ++Q + + I + K L LE+KL Y + + Sbjct: 63 KDIKRFAECTVIGDDTIEERLSLFENQIENVKCQIAELKRYLDLLEYKLAFYQKAK 118 >ref|NP_438354.1| transcriptional regulator [Haemophilus influenzae Rd KW20] ref|ZP_00154695.1| COG0789: Predicted transcriptional regulators [Haemophilus influenzae R2846] sp|P44558|Y186_HAEIN Putative HTH-type transcriptional regulator HI0186 pir||I64052 probable DNA-binding protein homolog - Haemophilus influenzae (strain Rd KW20) gb|AAC21856.1| transcriptional regulator, putative [Haemophilus influenzae Rd] Length = 135 Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 73/116 (62%) Query: 5 FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64 +T + A K+G++ +RFY+++GLL V R+E NR +TD ++ WL L+CL+ TGMS+ Sbjct: 3 YTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSL 62 Query: 65 EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERYYRGE 120 ++IK++ + G T+ ER+ L ++Q + + I + K L LE+KL Y + + Sbjct: 63 KDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAK 118 >ref|ZP_00156027.1| COG0789: Predicted transcriptional regulators [Haemophilus influenzae R2866] Length = 135 Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 72/116 (62%) Query: 5 FTIGQVAAKVGLNIGAIRFYERKGLLDPVVRNEQNNRLYTDDEINWLIFLRCLRETGMSV 64 +T + A K G++ +RFY+++GLL V R+E NR +TD ++ WL L+CL+ TGMS+ Sbjct: 3 YTTAKAAEKTGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGMSL 62 Query: 65 EEIKKYYDMVKAGTSTLPERIKLIQDQKQALLDDIDKKKAQLVHLEHKLERYYRGE 120 ++IK++ + G T+ ER+ L ++Q + + I + K L LE+KL Y + + Sbjct: 63 KDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFYQKAK 118 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.140 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 179,376,330 Number of extensions: 6842517 Number of successful extensions: 25229 Number of sequences better than 1.0e-05: 176 Number of HSP's gapped: 25358 Number of HSP's successfully gapped: 176 Length of query: 122 Length of database: 757,237,578 Length adjustment: 86 Effective length of query: 36 Effective length of database: 523,739,064 Effective search space: 18854606304 Effective search space used: 18854606304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)