BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0117.p (168 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241561.1| BH0695~unknown conserved protein in others [Bac... 244 5e-64 ref|NP_713713.1| conserved hypothetical protein [Leptospira inte... 110 1e-23 ref|NP_924382.1| hypothetical protein gll1436 [Gloeobacter viola... 103 1e-21 ref|NP_438059.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium m... 100 2e-20 ref|NP_713714.1| conserved hypothetical protein [Leptospira inte... 94 9e-19 >ref|NP_241561.1| BH0695~unknown conserved protein in others [Bacillus halodurans] pir||G83736 hypothetical protein BH0695 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04414.1| BH0695~unknown conserved protein in others [Bacillus halodurans] Length = 169 Score = 244 bits (624), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 109/167 (65%), Positives = 136/167 (81%) Query: 2 SKMISRVEGLELVLERVFDAPRELVFKVFSEAEHLKQWWGPRGWIVPVCTVDFRPGGIWH 61 + MI + EG +L+ ERVFDAPRELVFK+F+EAEHLK WWGPRGW + VC +DFRPGG WH Sbjct: 3 NSMIFKAEGNQLIAERVFDAPRELVFKMFTEAEHLKNWWGPRGWDLTVCNIDFRPGGSWH 62 Query: 62 YCMKCVDEKQGDFFGMESWGKGVYHEIVDGEKVVYTDYFSDAEGNEAEGMPSTLVTMLFE 121 +CMKCVDE QGDF+G ESWGK +Y EIVDGEK+VY DYFSD+EGN +E MP+ +T+ F Sbjct: 63 FCMKCVDENQGDFYGYESWGKALYREIVDGEKIVYVDYFSDSEGNLSEEMPAAEITLTFI 122 Query: 122 EYDGKTKLVSRSKYESAEALKTVMDMGMEQGITETWDRLEEHLQSVK 168 + GKTK+V++ +Y SAE L+ +DMGMEQG TETWDRL E+LQ ++ Sbjct: 123 DLGGKTKIVNQVEYPSAEELQKGLDMGMEQGFTETWDRLVEYLQDIQ 169 >ref|NP_713713.1| conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601] gb|AAN50731.1| conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601] gb|AAS69285.1| conserved hypothetical protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 162 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 54/128 (42%), Positives = 82/128 (64%), Gaps = 16/128 (12%) Query: 12 ELVLERVFDAPRELVFKVFSEAEHLKQWWGPRGWIVPVCTVDFRPGGIWHYCMKCVDEKQ 71 EL++ R+F+APRE +F ++ E L +WWGP+G+ P+C +DF+ GG + +CM+ +E+ Sbjct: 11 ELLITRIFNAPRETIFDAWTIPEQLMRWWGPKGFTCPICKIDFKVGGKYLFCMRSPEEQ- 69 Query: 72 GDFFGMESWGKGVYHEIVDGEKVVYTDYFSDAEGN----EAEGMP-----STLVTMLFEE 122 E W GVY EIV EK+V TD F+D +GN A G+ S L+T++FE+ Sbjct: 70 ------EFWSTGVYKEIVRPEKIVQTDNFADKDGNVVPASAYGIQGDWPESILITLVFED 123 Query: 123 YDGKTKLV 130 + GKTKL+ Sbjct: 124 HQGKTKLI 131 >ref|NP_924382.1| hypothetical protein gll1436 [Gloeobacter violaceus] dbj|BAC89377.1| gll1436 [Gloeobacter violaceus PCC 7421] Length = 171 Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 88/159 (55%), Gaps = 16/159 (10%) Query: 12 ELVLERVFDAPRELVFKVFSEAEHLKQWWGPRGWIVPVCTVDFRPGGIWHYCMKCVDEKQ 71 E+ + RVF+AP LVF + E LK+W GPR W + VC ++ + GG + Y M+ D Sbjct: 18 EIAMVRVFNAPPRLVFDALTRPELLKRWLGPRDWQLVVCEIELQVGGTYRYVMRGPD--- 74 Query: 72 GDFFGMESWGKGVYHEIVDGEKVVYTDYFSDA--EGNEAEGMPSTLVTMLFEEYDGKTKL 129 G G WG GVY EIV E+VV T+ F + GN LVT + E +G+T L Sbjct: 75 GAEMG---WG-GVYREIVPCERVVATETFDVSWYPGN-------ALVTSVLTEQNGRTTL 123 Query: 130 VSRSKYESAEALKTVMDMGMEQGITETWDRLEEHLQSVK 168 S YE+ EA V+ ME G+ E++DRL+E L ++ Sbjct: 124 TSTVLYETREARDAVLASPMESGLAESYDRLDELLTTMS 162 >ref|NP_438059.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti 1021] pir||G96031 conserved hypothetical protein [imported] - Sinorhizobium meliloti (strain 1021) magaplasmid pSymB emb|CAC49919.1| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti] Length = 154 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 19/157 (12%) Query: 13 LVLERVFDAPRELVFKVFSEAEHLKQWWGPRGWIVPVCTVDFRPGGIWHYCMKCVDEKQG 72 L + RVFDAP LVFKV++ EHL +WWGP+G+ VP T DFR GG W C++ + Sbjct: 12 LTITRVFDAPANLVFKVWTTPEHLARWWGPKGFTVPAITTDFREGGAWRGCIRSPE---- 67 Query: 73 DFFGMESWGKGVYHEIVDGEKVVYTDYFSDAEGNEAEGMPSTLVTMLFEEYDGKTKLV-S 131 G + W G+Y EIV ++V + + E EG TL+T+ E+ G T+L Sbjct: 68 ---GQDYWAHGIYREIVAPSRIVLSFVW------EEEGAIDTLITVTLEDVAGGTRLTFH 118 Query: 132 RSKYESAEALKTVMDMGMEQGITETWDRLEEHLQSVK 168 ++ + SAE+ + +G +E DRL ++ + K Sbjct: 119 QAPFTSAESRDS-----HAEGWSECMDRLVSYVAARK 150 >ref|NP_713714.1| conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601] gb|AAN50732.1| conserved hypothetical protein [Leptospira interrogans serovar lai str. 56601] Length = 159 Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 57/159 (35%), Positives = 88/159 (55%), Gaps = 15/159 (9%) Query: 12 ELVLERVFDAPRELVFKVFSEAEHLKQWWGPRGWIVPVCTVDFRPGGIWHYCMKCVDEKQ 71 E+ + R+FDAPR+LVF+++++ EH+ WWGP+G+ T+D +PGGIW + M D Sbjct: 13 EIRVTRIFDAPRDLVFRMWTDPEHVIHWWGPKGFTNTFETMDVKPGGIWKFIMHGPD--- 69 Query: 72 GDFFGMESWGKGVYHEIVDGEKVVYTDYFSDAEGNEAEGMPSTL-VTMLFEEYDGKTKLV 130 G + V+ E+V EK+VY G++ + P VT+LF E +GKT L Sbjct: 70 ----GTDYPNLIVFLEVVRPEKLVY------KHGSDMKDHPGDFHVTVLFSEQNGKTILD 119 Query: 131 SRSKYESAEALK-TVMDMGMEQGITETWDRLEEHLQSVK 168 + +A+ TV G +G+ +T DRL E+L K Sbjct: 120 MTMLFNTAQQRNETVEKYGAIEGLNQTMDRLVEYLAKQK 158 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 258,928,721 Number of extensions: 10984167 Number of successful extensions: 25437 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 25395 Number of HSP's successfully gapped: 42 Length of query: 168 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 52 Effective length of database: 442,286,094 Effective search space: 22998876888 Effective search space used: 22998876888 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)