BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0116.p (91 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_241560.1| transcriptional regulator (ArsR family) [Bacill... 129 2e-29 ref|ZP_00183966.1| hypothetical protein Exigu060201 [Exiguobacte... 101 5e-21 gb|AAM70335.1| CalR8 [Micromonospora echinospora] 78 6e-14 gb|AAS69287.1| transcriptional regulator (ArsR family) [Leptospi... 70 2e-11 ref|NP_713711.1| transcriptional regulator, ArsR family [Leptosp... 70 2e-11 >ref|NP_241560.1| transcriptional regulator (ArsR family) [Bacillus halodurans] pir||F83736 transcription regulator (ArsR family) BH0694 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04413.1| transcriptional regulator (ArsR family) [Bacillus halodurans] Length = 109 Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 60/91 (65%), Positives = 76/91 (83%) Query: 1 MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60 +VE+L+DGPL VGEIA ++GLRQPQASKHLRVLLEAGLVEV+ +ANRR Y LR EP +AL Sbjct: 17 IVELLRDGPLPVGEIANRVGLRQPQASKHLRVLLEAGLVEVKVEANRRIYTLRQEPFQAL 76 Query: 61 DAWLEAYRKMWNERFDNLDEYLRHLQSQGKE 91 WLE Y +WNERF++LD YL+ LQ++ ++ Sbjct: 77 HEWLETYNTIWNERFNSLDRYLQELQTKKQK 107 >ref|ZP_00183966.1| hypothetical protein Exigu060201 [Exiguobacterium sp. 255-15] Length = 112 Score = 101 bits (252), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 49/86 (56%), Positives = 60/86 (69%) Query: 1 MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60 +VE+LK GPL VGEIA QLGL QPQ SKHL+VLLEA LV +E ANRR Y LRTEP + L Sbjct: 20 IVELLKTGPLPVGEIAAQLGLNQPQTSKHLKVLLEADLVRIEPAANRRIYHLRTEPFQGL 79 Query: 61 DAWLEAYRKMWNERFDNLDEYLRHLQ 86 AW +++ + R L+ YL +Q Sbjct: 80 TAWSQSFEQQMVSRMTRLEGYLEQIQ 105 >gb|AAM70335.1| CalR8 [Micromonospora echinospora] Length = 130 Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 5/95 (5%) Query: 1 MVEMLKDGPLSVGEIA----EQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEP 56 ++E+L DG LS GE+ + G+ QP S+HLRVL E G V Q RR Y + P Sbjct: 15 IIELLADGELSAGEVGAVVQREFGISQPGVSQHLRVLRENGFATVRPQGTRRLYAVDPAP 74 Query: 57 LEALDAWLEAYRKMWNERFDNLD-EYLRHLQSQGK 90 L+ LD WLE YR+ WN+R D L E R QG+ Sbjct: 75 LQELDRWLERYRRFWNQRLDALGTEIARGRARQGE 109 >gb|AAS69287.1| transcriptional regulator (ArsR family) [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 126 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%) Query: 1 MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60 ++ L+ G ++V ++AE + P +KHL+VL +AGL+ +A R RL PL+ Sbjct: 24 ILATLRYGEVTVKQLAEPFAISLPAITKHLKVLEKAGLISRGREAQWRPSRLEAGPLKEA 83 Query: 61 DAWLEAYRKMWNERFDNLDEYLRHLQSQ 88 W++ YR+MW R D LDEYLR LQ + Sbjct: 84 ADWIDEYRQMWEARLDRLDEYLRELQQK 111 >ref|NP_713711.1| transcriptional regulator, ArsR family [Leptospira interrogans serovar lai str. 56601] gb|AAN50729.1| transcriptional regulator, ArsR family [Leptospira interrogans serovar lai str. 56601] Length = 126 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 53/88 (60%) Query: 1 MVEMLKDGPLSVGEIAEQLGLRQPQASKHLRVLLEAGLVEVEAQANRRNYRLRTEPLEAL 60 ++ L+ G ++V ++AE + P +KHL+VL +AGL+ +A R RL PL+ Sbjct: 24 ILATLRYGEVTVKQLAEPFAISLPAITKHLKVLEKAGLISRGREAQWRPSRLEAGPLKEA 83 Query: 61 DAWLEAYRKMWNERFDNLDEYLRHLQSQ 88 W++ YR+MW R D LDEYLR LQ + Sbjct: 84 ADWIDEYRQMWEARLDRLDEYLRELQQK 111 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 130,927,126 Number of extensions: 4175327 Number of successful extensions: 17273 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 17274 Number of HSP's successfully gapped: 49 Length of query: 91 Length of database: 757,237,578 Length adjustment: 59 Effective length of query: 32 Effective length of database: 597,046,737 Effective search space: 19105495584 Effective search space used: 19105495584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 120 (50.8 bits)