BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0115.p
         (192 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAD68457.1| unknown [environmental sequence]                        70   4e-11
ref|NP_840145.1| hypothetical protein [Nitrosomonas europaea ATC...    65   6e-10
ref|NP_901698.1| Conserved hypothetical protein [Chromobacterium...    56   4e-07

>gb|EAD68457.1| unknown [environmental sequence]
          Length = 141

 Score = 69.7 bits (169), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query: 51  VPGYGTIVEAGSGWGTLGLDIIRHCPGKRLTGIENSSLPLWGSQLLALIAARLQHSGNGR 110
           +P  G I E GSGWGTL + I +      + G ENS +P   S++  L+         G 
Sbjct: 1   MPCSGHIYELGSGWGTLAIPIAKQFGECHVHGYENSIVPYTVSRVRRLL---------GP 51

Query: 111 EPLQGRLRFIRGNIYRGSYADADMVICYLFPGAMERLAVKFRQELPPGAVVISVFFALPD 170
             L    R    N        A +V+CY  PG M RL  KF +EL   A VIS  FA+  
Sbjct: 52  PNLNLHWR----NFMNSDLGTAGVVVCYQSPGNMSRLRPKFEEELKNNAYVISNTFAVHG 107

Query: 171 MQPVRTVTCRDTLQTKLYVY 190
            +P  T    D   T +YVY
Sbjct: 108 WKPTETHRVDDLFNTCIYVY 127


>ref|NP_840145.1| hypothetical protein [Nitrosomonas europaea ATCC 19718]
 emb|CAD83955.1| hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 260

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 13/134 (9%)

Query: 57  IVEAGSGWGTLGLDIIRHCPGKRLTGIENSSLPLWGSQLLALIAARLQHSGNGREPLQGR 116
           +++ GSG G L   + R  P     GIE + LP W S+L AL++         R+  Q  
Sbjct: 137 LIDLGSGCGGLVCKLARMLPHGSYHGIETAVLPCWISKLRALLS---------RQDCQ-- 185

Query: 117 LRFIRGNIYRGSYADADMVICYLFPGAMERLAVKFRQELPPGAVVISVFFALPDMQPVRT 176
             F   +I++   +  D+V  YL P  M RL  K R+E+ PG++ IS  F +P ++P R 
Sbjct: 186 --FKWESIWQHDLSGYDVVYAYLSPVPMPRLWEKARREMRPGSLFISNTFTVPGIKPDRC 243

Query: 177 VTCRDTLQTKLYVY 190
           +   D   T LY++
Sbjct: 244 IRLDDFSSTVLYIW 257


>ref|NP_901698.1| Conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
 gb|AAQ59700.1| Conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 246

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 34  MPASKAVRLAVAGEVNRVPGYGTIVEAGSGWGTLGLDIIRHCPGKRLTGIENSSLPLWGS 93
           +P  ++  L       R+ G  +++EAG G G L L + +  P  R+  +EN+     GS
Sbjct: 94  VPLYRSAALVAERLAERLAGDASLLEAGCGDGRLALQLSQRRPDLRMRALENAV----GS 149

Query: 94  QLLALIAARLQHSGNGREPLQGRLRFIRGNIYRGSYADADMVICYLFPGAMERLAVKFRQ 153
            LLA    R   +G        +L F   N +   +   D V  +L P  M R+  KF  
Sbjct: 150 WLLARW--RWLRAGK-----PSQLAFACRNFWNEDWGGYDAVYVFLSPEPMPRVWRKFVA 202

Query: 154 ELPPGAVVISVFFALPDMQPVRTVTCRDTLQTKLYVY 190
           E  PG+++IS  F +P + P   +     LQ +L ++
Sbjct: 203 EGRPGSLLISNTFPVPGVAPDECIPLEGPLQKELLIW 239


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.326    0.141    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 281,011,579
Number of extensions: 11071993
Number of successful extensions: 33871
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 33875
Number of HSP's successfully gapped: 4
Length of query: 192
Length of database: 757,237,578
Length adjustment: 119
Effective length of query: 73
Effective length of database: 434,140,797
Effective search space: 31692278181
Effective search space used: 31692278181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 122 (51.6 bits)