BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0111.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00091397.1| COG1680: Beta-lactamase class C and other pen... 430 e-119 gb|EAJ51653.1| unknown [environmental sequence] 427 e-118 gb|EAH89621.1| unknown [environmental sequence] 412 e-114 ref|NP_251005.1| hypothetical protein [Pseudomonas aeruginosa PA... 407 e-112 gb|EAJ36124.1| unknown [environmental sequence] 367 e-100 >ref|ZP_00091397.1| COG1680: Beta-lactamase class C and other penicillin binding proteins [Azotobacter vinelandii] Length = 396 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/378 (59%), Positives = 265/378 (70%), Gaps = 1/378 (0%) Query: 14 LPERIDKVIDQTLTDKRLAGAVIKVAVDGELIYNRAAGFANRELNQPMREDALFRLASVS 73 L RI + Q L D+RL GAVI VA DGELI+ +AAGFA+RE +PM +A+FRLASVS Sbjct: 17 LGTRIHSTVQQALDDQRLVGAVILVARDGELIHQQAAGFADRESARPMTLEAVFRLASVS 76 Query: 74 KPITSTAALVLVAQGRLQLDDRVDRWLPEFQPRLKNGEHAAITIRHLMTHTAGLTYRFFQ 133 KPI STAAL LVAQGRL LD ++ WLPEFQPRL + A IT+R L++HTAGL YRFF+ Sbjct: 77 KPIVSTAALALVAQGRLDLDAGIEHWLPEFQPRLADRRSARITVRQLLSHTAGLGYRFFE 136 Query: 134 EE-GGSYEQAGVSDGMDQPGITLDENLRRIASAPLLYTPGTQWRYSIATDVLGAVIARVA 192 + G Y +AGVSDGMD GI+L+ENLRR+AS PLLY PGT W YS+ATDVLGA+IAR Sbjct: 137 ADTAGPYARAGVSDGMDASGISLEENLRRLASVPLLYEPGTAWGYSLATDVLGALIARAH 196 Query: 193 GTTLSEAIDALVTRPLGMKDTGFLATDPQRLATAYADDVPGLRPLHNPDSLAFMEGTAGF 252 GT L EA+ LVT PLGM DTGF+A DPQR+ATAY +D P L ++++ EG G Sbjct: 197 GTPLHEAVRQLVTGPLGMVDTGFVARDPQRVATAYVNDAPQPHRLAEGETVSAFEGAVGI 256 Query: 253 RLSPGRALDPAAYHSGGAGMVGSTGDFLHLLETLRKGGAPLLPEPLVREMTTNQIGDLHM 312 SP R DP A+ SGGAGM G+ D L LLE LR+G LP + EM +Q + Sbjct: 257 TYSPSRIFDPQAFPSGGAGMAGTAQDLLRLLEALRQGCGAFLPNEWIAEMARDQTDGREL 316 Query: 313 PFWPGRGFGLGITVLKDPVAADTAESPGTWRMGGTYGHSWFVDPEQRLSVAAFTNTALEG 372 P PG GFGLG +VL+DPV A + ES GTWR GG YGHSWFVD Q LSV AFTNT EG Sbjct: 317 PDAPGFGFGLGFSVLRDPVLAASPESAGTWRWGGAYGHSWFVDRAQGLSVVAFTNTLYEG 376 Query: 373 MSGPFTIDLCNAVYGRLN 390 MSG F DL +AVYG L Sbjct: 377 MSGRFVTDLRDAVYGALE 394 >gb|EAJ51653.1| unknown [environmental sequence] Length = 397 Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/375 (58%), Positives = 262/375 (69%), Gaps = 1/375 (0%) Query: 14 LPERIDKVIDQTLTDKRLAGAVIKVAVDGELIYNRAAGFANRELNQPMREDALFRLASVS 73 LP R+D VID+ L ++RL G V+ +A GE +Y RAAG A+RE QPMRED LFRLAS+S Sbjct: 11 LPLRVDAVIDRALAEQRLVGGVVLIAERGEPVYRRAAGLADREHEQPMREDTLFRLASIS 70 Query: 74 KPITSTAALVLVAQGRLQLDDRVDRWLPEFQPRLKNGEHAAITIRHLMTHTAGLTYRFFQ 133 KPI STAA+VLV+Q RL LDD V+R+LPEF PR +G +T+RHL+THTAGL YRF + Sbjct: 71 KPIVSTAAMVLVSQQRLGLDDAVERYLPEFTPRGADGGAVHLTVRHLLTHTAGLGYRFLE 130 Query: 134 -EEGGSYEQAGVSDGMDQPGITLDENLRRIASAPLLYTPGTQWRYSIATDVLGAVIARVA 192 +E G Y +AGVSDGMD+ GITL ENLRRIA PLL+ PGT W YS++ DVLGA+I RV Sbjct: 131 PDEHGPYARAGVSDGMDRAGITLAENLRRIAGVPLLFAPGTAWAYSLSIDVLGALIERVT 190 Query: 193 GTTLSEAIDALVTRPLGMKDTGFLATDPQRLATAYADDVPGLRPLHNPDSLAFMEGTAGF 252 L +A+ LVT PLGM DT F D QRLAT Y DVP + + + EG G Sbjct: 191 QLPLGDAVRDLVTAPLGMNDTAFYTLDAQRLATPYVSDVPRPHRMRDKERATPFEGAVGI 250 Query: 253 RLSPGRALDPAAYHSGGAGMVGSTGDFLHLLETLRKGGAPLLPEPLVREMTTNQIGDLHM 312 P RALDP A+ SGGAGMVG D L LL+TLR GG LLP + EM NQ G++ Sbjct: 251 DFEPARALDPEAFASGGAGMVGCADDVLRLLDTLRDGGGALLPRAIADEMGRNQTGEMGP 310 Query: 313 PFWPGRGFGLGITVLKDPVAADTAESPGTWRMGGTYGHSWFVDPEQRLSVAAFTNTALEG 372 P PG GFGLG +VL+DP+AAD+ ESPGTWR GG YGHSWFVD + LSV A TNT EG Sbjct: 311 PDQPGYGFGLGFSVLRDPLAADSPESPGTWRWGGAYGHSWFVDRSRGLSVVALTNTLYEG 370 Query: 373 MSGPFTIDLCNAVYG 387 MSG F +L +AVYG Sbjct: 371 MSGAFVNELRDAVYG 385 >gb|EAH89621.1| unknown [environmental sequence] Length = 393 Score = 412 bits (1059), Expect = e-114, Method: Compositional matrix adjust. Identities = 207/375 (55%), Positives = 266/375 (70%), Gaps = 1/375 (0%) Query: 14 LPERIDKVIDQTLTDKRLAGAVIKVAVDGELIYNRAAGFANRELNQPMREDALFRLASVS 73 L ER+D V+ + L +RL G V+ VA DGEL+Y RAAGFA+RE PM+ED LFRLASV+ Sbjct: 17 LAERVDAVLSRQLELQRLVGVVVLVARDGELVYRRAAGFADREARTPMQEDTLFRLASVT 76 Query: 74 KPITSTAALVLVAQGRLQLDDRVDRWLPEFQPRLKNGEHAAITIRHLMTHTAGLTYRFFQ 133 KPI S AA+ LVAQ +L LDD V RWLPEF+P L++G I +RHL+THTAGL YR+ + Sbjct: 77 KPIVSAAAMALVAQRKLSLDDDVTRWLPEFRPALRDGSVPVIKVRHLLTHTAGLGYRYAE 136 Query: 134 EEG-GSYEQAGVSDGMDQPGITLDENLRRIASAPLLYTPGTQWRYSIATDVLGAVIARVA 192 + +Y +AGVSDG+D ITL EN+RRIAS PL Y PGT W YS++ DV+GAVI + Sbjct: 137 PDATCAYARAGVSDGLDGASITLAENMRRIASVPLQYAPGTGWNYSLSIDVVGAVIEAAS 196 Query: 193 GTTLSEAIDALVTRPLGMKDTGFLATDPQRLATAYADDVPGLRPLHNPDSLAFMEGTAGF 252 G L++A+DALV RPLG +DTGF+A D RLAT Y +D P L + + EG+ G Sbjct: 197 GLPLADAVDALVLRPLGTRDTGFVARDAARLATPYVNDTPQPHRLAENEVVPIYEGSVGV 256 Query: 253 RLSPGRALDPAAYHSGGAGMVGSTGDFLHLLETLRKGGAPLLPEPLVREMTTNQIGDLHM 312 SP RAL+ A+ SGGAGMVG+ GD L++L+TLR GG +LP LV EM +L + Sbjct: 257 TYSPSRALNADAFASGGAGMVGTAGDVLNVLDTLRAGGGTILPAELVDEMGRIHTDNLEL 316 Query: 313 PFWPGRGFGLGITVLKDPVAADTAESPGTWRMGGTYGHSWFVDPEQRLSVAAFTNTALEG 372 P PG G+G+G +VL+DP AA + ESPGTWR GG YGHSWFVD + L+V + +NT EG Sbjct: 317 PDLPGAGYGIGFSVLRDPRAALSPESPGTWRWGGVYGHSWFVDRARGLTVVSLSNTLYEG 376 Query: 373 MSGPFTIDLCNAVYG 387 M+GP+T+DL +A+YG Sbjct: 377 MNGPYTLDLRDAIYG 391 >ref|NP_251005.1| hypothetical protein [Pseudomonas aeruginosa PA01] pir||C83357 hypothetical protein PA2315 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05703.1| hypothetical protein PA2315 [Pseudomonas aeruginosa PAO1] Length = 391 Score = 407 bits (1045), Expect = e-112, Method: Compositional matrix adjust. Identities = 210/374 (56%), Positives = 256/374 (68%), Gaps = 1/374 (0%) Query: 14 LPERIDKVIDQTLTDKRLAGAVIKVAVDGELIYNRAAGFANRELNQPMREDALFRLASVS 73 L E +D+VI+ D+RL GAV+ VA G+ +Y RAAG A+RE + M ED+LFRLASVS Sbjct: 12 LAENVDQVIEAAFADQRLVGAVVLVAHRGQWLYRRAAGLADREAGRIMGEDSLFRLASVS 71 Query: 74 KPITSTAALVLVAQGRLQLDDRVDRWLPEFQPRLKNGEHAAITIRHLMTHTAGLTYRFFQ 133 KPI S AAL LV +GRL LD+ + WLP F+PRL +G A IT R L++H+AGL YRF + Sbjct: 72 KPIVSVAALSLVDEGRLALDEPIADWLPAFRPRLADGREARITPRQLLSHSAGLGYRFLE 131 Query: 134 EEG-GSYEQAGVSDGMDQPGITLDENLRRIASAPLLYTPGTQWRYSIATDVLGAVIARVA 192 + G Y +AG+SDGMD PG L ENLRR+AS PLLY PG W YS+ATDVLGA++ RV Sbjct: 132 ADADGPYARAGISDGMDLPGFDLAENLRRLASVPLLYEPGRAWGYSLATDVLGALVERVD 191 Query: 193 GTTLSEAIDALVTRPLGMKDTGFLATDPQRLATAYADDVPGLRPLHNPDSLAFMEGTAGF 252 G L+EA+ V P GM+D+GFL D QRLA Y D P R + +++ E G Sbjct: 192 GRPLAEALRQRVGIPAGMRDSGFLCADAQRLAAVYVSDRPRPRRMAERETVTPFEDCVGI 251 Query: 253 RLSPGRALDPAAYHSGGAGMVGSTGDFLHLLETLRKGGAPLLPEPLVREMTTNQIGDLHM 312 R P RA +P+AY SGGAGM+GS GD L LLE LR+GGAPLL LV EM +Q+ L + Sbjct: 252 RFEPRRAFEPSAYASGGAGMIGSAGDVLRLLEVLRQGGAPLLTPGLVEEMGRDQLPGLEL 311 Query: 313 PFWPGRGFGLGITVLKDPVAADTAESPGTWRMGGTYGHSWFVDPEQRLSVAAFTNTALEG 372 P PG GFGLG +VL+DP A + ESPGTWR GG YGHSWFVD + LSV A TNT EG Sbjct: 312 PANPGFGFGLGFSVLRDPAIAQSPESPGTWRWGGAYGHSWFVDRARELSVVALTNTLFEG 371 Query: 373 MSGPFTIDLCNAVY 386 MSG F DL +AVY Sbjct: 372 MSGRFVNDLRDAVY 385 >gb|EAJ36124.1| unknown [environmental sequence] Length = 398 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 197/376 (52%), Positives = 249/376 (66%), Gaps = 3/376 (0%) Query: 14 LPERIDKVIDQTLTDKRLAGAVIKVAVDGELIYNRAAGFANRELNQPMREDALFRLASVS 73 L R+D V+D+ L D R+ GAV+ A GEL Y RAAG A+RE PM+E LFRLAS+S Sbjct: 17 LRRRVDAVLDRALADARVVGAVVLAARHGELRYARAAGLADREAGTPMQERTLFRLASLS 76 Query: 74 KPITSTAALVLVAQGRLQLDDRVDRWLPEFQPRLKNGEHAAITIRHLMTHTAGLTYRFFQ 133 KPI + AA+ LVA GR+ LD+ V RWLP F P L +G AAIT+RHL++HTAGL YRF + Sbjct: 77 KPIVTAAAMRLVAAGRIGLDEPVARWLPAFAPTLPDGTRAAITLRHLLSHTAGLGYRFLE 136 Query: 134 EEG-GSYEQAGVSDGMDQPGITLDENLRRIASAPLLYTPGTQWRYSIATDVLGAVIARVA 192 + G Y +AGVSDGMD+ ++L EN+RRIA PL + PGT W YS+A DV+GA+I + Sbjct: 137 ADADGPYARAGVSDGMDRAELSLAENVRRIAGVPLQFAPGTSWAYSLAIDVVGALIEAID 196 Query: 193 GTTLSEAIDALVTRPLGMKDTGFLATDPQRLATAYADDVPGL-RPLHNPDSLAFMEGTAG 251 G L +A+ ALVT PLGM DT F+ D R+AT Y PG+ R + + D + +GT G Sbjct: 197 GRPLPDAVAALVTAPLGMSDTAFVTHDAARVATPYVS-APGVPRRMADDDLVPVYDGTIG 255 Query: 252 FRLSPGRALDPAAYHSGGAGMVGSTGDFLHLLETLRKGGAPLLPEPLVREMTTNQIGDLH 311 R +P RA DPAA+ SGGAGM+GS D + LL+TLR G L + EM+ Q G Sbjct: 256 IRFTPARAFDPAAWPSGGAGMIGSARDCMTLLDTLRTGRDGWLSPRWIDEMSRVQPGAHD 315 Query: 312 MPFWPGRGFGLGITVLKDPVAADTAESPGTWRMGGTYGHSWFVDPEQRLSVAAFTNTALE 371 +P PG GFGLG +VL+DP A + ES GTWR GG YGH+WFVD L+V A TNT E Sbjct: 316 LPDAPGFGFGLGFSVLRDPALAQSPESVGTWRWGGAYGHAWFVDRAAGLTVVALTNTLYE 375 Query: 372 GMSGPFTIDLCNAVYG 387 GM G D+ +AVYG Sbjct: 376 GMHGRIVTDVRDAVYG 391 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 604,143,515 Number of extensions: 26361115 Number of successful extensions: 58673 Number of sequences better than 1.0e-05: 639 Number of HSP's gapped: 57910 Number of HSP's successfully gapped: 639 Length of query: 391 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 263 Effective length of database: 409,704,906 Effective search space: 107752390278 Effective search space used: 107752390278 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)