BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0110.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00091398.1| COG2814: Arabinose efflux permease [Azotobact... 337 3e-91 ref|NP_929878.1| hypothetical protein [Photorhabdus luminescens ... 326 6e-88 ref|ZP_00092056.1| COG2814: Arabinose efflux permease [Azotobact... 318 1e-85 ref|ZP_00127108.1| COG2814: Arabinose efflux permease [Pseudomon... 304 2e-81 ref|NP_792862.1| major facilitator family transporter [Pseudomon... 303 6e-81 >ref|ZP_00091398.1| COG2814: Arabinose efflux permease [Azotobacter vinelandii] Length = 511 Score = 337 bits (864), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 197/380 (51%), Positives = 229/380 (60%) Query: 20 RLPWGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPL 79 RLP SLLALAM FI ILTE +PAGLL Q+ GL V+EA GQ VT+YA+GSL AAIPL Sbjct: 111 RLPLVSLLALAMAAFITILTEALPAGLLPQMAQGLMVSEAWVGQTVTIYAIGSLVAAIPL 170 Query: 80 TAATRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARR 139 TAAT+G RR+P V NTVTTFS +Y LT+ ARF AGVSAG+LW + AGYA R Sbjct: 171 TAATQGVRRRPLLLAAIAGFVVANTVTTFSGSYVLTMVARFLAGVSAGLLWALLAGYAAR 230 Query: 140 MVPEPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKL 199 MVPE KGRA+A+AMVGTPLAL+ GVPAGT G+L GWR+ FGI ++ Sbjct: 231 MVPEHKKGRAIAIAMVGTPLALSLGVPAGTFLGNLVGWRTCFGIMSALALVLMVWVRVQV 290 Query: 200 PDYPGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLV 259 PD+ G+ AGKRLPL +VFT GVRP HNILYTYIAP+L G R DLV Sbjct: 291 PDFAGQAAGKRLPLGRVFTIAGVRPVLFVVLAFVLAHNILYTYIAPFLAAAGMAERTDLV 350 Query: 260 LLIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGL 319 LL+FG+TALLGIW++GV IDRHLR G+ + P V+ A WGL Sbjct: 351 LLVFGVTALLGIWIVGVLIDRHLRALTLASTVVFGLSALALGVAGDAPAVVYAAVAAWGL 410 Query: 320 TFGXXXXXXXXXXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPWVXX 379 FG E+ADVAQSMLVTAWN A LLE GV +F Sbjct: 411 AFGGAATLFQTALAKTAGEAADVAQSMLVTAWNTAIAGGGIVGGVLLERLGVGAFAPALL 470 Query: 380 XXXXXXXXXXWRSRAHGFPA 399 W +R HGFPA Sbjct: 471 VLLAATLVVVWAARRHGFPA 490 >ref|NP_929878.1| hypothetical protein [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE15017.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 399 Score = 326 bits (835), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 180/381 (47%), Positives = 224/381 (58%) Query: 20 RLPWGSLLALAMTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPL 79 P+ +LLALAMTGF+ +LTET PAG+L QI+ L V+EA+AGQ VTLYA+GSL AAIPL Sbjct: 14 NFPFVALLALAMTGFLALLTETFPAGILSQISDSLAVSEALAGQFVTLYAIGSLVAAIPL 73 Query: 80 TAATRGWRRKPXXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARR 139 T AT+GWRR+ VFNT+T +SNY + LAAR +G++ G++WGM GYARR Sbjct: 74 TTATQGWRRRRLLLMALTGLLVFNTLTALTSNYIVALAARLLSGMAGGLIWGMLVGYARR 133 Query: 140 MVPEPLKGRAMAVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKL 199 MVP+ LKGRA+AVA VG PLAL+ GVP GT G + GWR+ FG+ K+ Sbjct: 134 MVPDHLKGRALAVAGVGAPLALSLGVPLGTFIGGIVGWRTTFGLMSILTLVVIAWVMLKV 193 Query: 200 PDYPGEDAGKRLPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLV 259 PDYPG A KR+P+ KV PGVRP H+ILYTY+ P++TQ G R+DLV Sbjct: 194 PDYPGRTAEKRIPIKKVIMIPGVRPVLSVLVCWVLAHSILYTYVLPFVTQAGLATRIDLV 253 Query: 260 LLIFGITALLGIWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGL 319 LL FG+ +LLGIW+ G+ ID+ LR G++ P + L +WGL Sbjct: 254 LLAFGVASLLGIWMTGLLIDKMLRSLVLISLALFTFASLILGVIGTLPVFVFLAVILWGL 313 Query: 320 TFGXXXXXXXXXXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPWVXX 379 TFG E ADVAQS+LVT WNLA LLET G SFPW Sbjct: 314 TFGGAAALLQTALAESAGEGADVAQSILVTLWNLAIAAGGIIGGILLETLGASSFPWTLL 373 Query: 380 XXXXXXXXXXWRSRAHGFPAK 400 W S +GFP K Sbjct: 374 VLLVLALLIVWNSGNYGFPHK 394 >ref|ZP_00092056.1| COG2814: Arabinose efflux permease [Azotobacter vinelandii] Length = 589 Score = 318 bits (816), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 180/370 (48%), Positives = 219/370 (59%) Query: 31 MTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPLTAATRGWRRKP 90 MTGFI ILTET+PAGLL Q+ GL +++A+AGQLV+ YALGSL AAIPL T GWRRKP Sbjct: 213 MTGFIAILTETLPAGLLPQLGRGLDISQALAGQLVSAYALGSLVAAIPLITLTAGWRRKP 272 Query: 91 XXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARRMVPEPLKGRAM 150 +FN++T SS+Y LTL ARF AGV+AG+ WG+ AG+ARRMV PL+GRAM Sbjct: 273 LLLLAIGGFLLFNSITALSSSYPLTLLARFLAGVAAGLAWGLLAGHARRMVAAPLQGRAM 332 Query: 151 AVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKLPDYPGEDAGKR 210 A+AMVGTPLAL+ GVPAGT G L GWR FG+ K+PD+PG A +R Sbjct: 333 AIAMVGTPLALSLGVPAGTWLGALVGWRMAFGLMSGLTLILAVWVLRKVPDFPGRAAERR 392 Query: 211 LPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLVLLIFGITALLG 270 L + +VF PGVRP HNILYTYIAP+L G + +D +LL+FG +ALLG Sbjct: 393 LGIRQVFAIPGVRPVLLVILLWVLAHNILYTYIAPFLAPAGMSTSVDRILLVFGASALLG 452 Query: 271 IWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGLTFGXXXXXXXX 330 IW++G+ IDR LR G QP V+ AVWGL FG Sbjct: 453 IWIVGLLIDRWLRALVLLSLGGFALASLALGFGGTQPAVVHAGVAVWGLIFGGAATLLQT 512 Query: 331 XXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPWVXXXXXXXXXXXXW 390 E AD+AQSM+VT WNLA LLET GV +FPWV Sbjct: 513 ASADAAGEGADLAQSMIVTVWNLAIAGGGVFGGLLLETAGVGAFPWVLLGLLAAALLCAG 572 Query: 391 RSRAHGFPAK 400 +R HGF A+ Sbjct: 573 MARTHGFRAE 582 >ref|ZP_00127108.1| COG2814: Arabinose efflux permease [Pseudomonas syringae pv. syringae B728a] Length = 401 Score = 304 bits (779), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 171/367 (46%), Positives = 207/367 (56%) Query: 31 MTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPLTAATRGWRRKP 90 MTGFICI+TET+PAGLL QI GL V+ + AGQ+VT+YALGSL AAIPLT AT+ WRR+ Sbjct: 21 MTGFICIVTETLPAGLLPQIADGLDVSASFAGQMVTVYALGSLLAAIPLTIATQSWRRRT 80 Query: 91 XXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARRMVPEPLKGRAM 150 VFN+VT SS+Y LTL ARFFAGVSAG+ W + AGYARRMV L+GRA+ Sbjct: 81 VLLVTIIGFLVFNSVTALSSSYGLTLIARFFAGVSAGLAWSLIAGYARRMVVPQLQGRAL 140 Query: 151 AVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKLPDYPGEDAGKR 210 AVAMVGTP+AL+ GVP GT G GWR FG+ K+PDYPG+ + +R Sbjct: 141 AVAMVGTPIALSLGVPLGTWLGGFMGWRMAFGLMSGMTVLLIIWVLVKVPDYPGKSSSQR 200 Query: 211 LPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLVLLIFGITALLG 270 + L +VF PGVR HN+LYTY+AP+++ G +DLVLL FG+ AL G Sbjct: 201 MALRQVFFTPGVRSVLGVVFTWMLAHNLLYTYVAPFVSAAGLANDVDLVLLAFGVAALAG 260 Query: 271 IWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGLTFGXXXXXXXX 330 IW+ G +DRHLR G+ S I + A +WGLTFG Sbjct: 261 IWVTGRLVDRHLRKTVLASLATFAAVSVFFGVFSGSATAIYIGAFIWGLTFGGAATLLQT 320 Query: 331 XXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPWVXXXXXXXXXXXXW 390 ADVA SM V WN A LL G SFPWV Sbjct: 321 ALADSAGAGADVALSMNVVVWNSAIAGGGLLGGVLLGQWGAGSFPWVLLMLLLLSLVIAL 380 Query: 391 RSRAHGF 397 R+ AHGF Sbjct: 381 RAGAHGF 387 >ref|NP_792862.1| major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO56557.1| major facilitator family transporter [Pseudomonas syringae pv. tomato str. DC3000] Length = 375 Score = 303 bits (775), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 171/367 (46%), Positives = 207/367 (56%) Query: 31 MTGFICILTETVPAGLLLQITHGLGVTEAMAGQLVTLYALGSLSAAIPLTAATRGWRRKP 90 MTGFICI+TET+PAGLL +I GLGV+ + AGQ+VT+YALGSL AAIPLT AT+ WRR+ Sbjct: 1 MTGFICIVTETLPAGLLPEIGTGLGVSASFAGQMVTVYALGSLLAAIPLTIATQSWRRRT 60 Query: 91 XXXXXXXXXXVFNTVTTFSSNYTLTLAARFFAGVSAGVLWGMSAGYARRMVPEPLKGRAM 150 VFN+VT SS+Y LTL ARFFAGVSAG+ W + AGYARRMV L+GRA+ Sbjct: 61 VLLLTIIGFLVFNSVTALSSDYWLTLVARFFAGVSAGLAWSLIAGYARRMVVPQLQGRAL 120 Query: 151 AVAMVGTPLALAFGVPAGTLFGDLAGWRSVFGIXXXXXXXXXXXXXXKLPDYPGEDAGKR 210 A+AMVGTP+AL+ GVP GT G GWR FG+ K+PDYPG+ + +R Sbjct: 121 AIAMVGTPIALSLGVPLGTWLGGFMGWRMAFGLMSAMTLLLIVWVLVKVPDYPGQSSSQR 180 Query: 211 LPLHKVFTAPGVRPXXXXXXXXXXXHNILYTYIAPYLTQTGFTGRMDLVLLIFGITALLG 270 + L +VF PGVR HNILYTY+AP+++ G +D VLL FGI AL G Sbjct: 181 MALRQVFFTPGVRSVLGVVFTWMLAHNILYTYVAPFVSGAGLASDVDWVLLTFGIAALAG 240 Query: 271 IWLIGVWIDRHLRPXXXXXXXXXXXXXXXXGIVSNQPGVICLVAAVWGLTFGXXXXXXXX 330 IW+ G +DRHLR G+ S + L +WGLTFG Sbjct: 241 IWVTGRLVDRHLRKTVLASLATFAAVSVFLGVFSGSAPAVYLGVFIWGLTFGGAATLLQT 300 Query: 331 XXXXXXRESADVAQSMLVTAWNLAXXXXXXXXXXLLETTGVRSFPWVXXXXXXXXXXXXW 390 E ADVA SM V WN A LL GV FPWV Sbjct: 301 ALADSAGEGADVALSMNVVVWNSAIAGGGLLGGVLLGHWGVGVFPWVLLVLSVLSLVIAL 360 Query: 391 RSRAHGF 397 R+R HGF Sbjct: 361 RARVHGF 367 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.140 0.450 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 421,360,522 Number of extensions: 13554844 Number of successful extensions: 38961 Number of sequences better than 1.0e-05: 251 Number of HSP's gapped: 38839 Number of HSP's successfully gapped: 251 Length of query: 402 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 274 Effective length of database: 409,704,906 Effective search space: 112259144244 Effective search space used: 112259144244 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)