BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0109.p (130 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_603716.1| Tetratricopeptide repeat family protein [Fusoba... 86 4e-16 ref|ZP_00143421.1| TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Fuso... 74 8e-13 ref|ZP_00143152.1| O-LINKED GLCNAC TRANSFERASE [Fusobacterium nu... 72 3e-12 ref|ZP_00145172.1| TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Fuso... 66 3e-10 >ref|NP_603716.1| Tetratricopeptide repeat family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gb|AAL95015.1| Tetratricopeptide repeat family protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 665 Score = 85.5 bits (210), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 74/130 (56%), Gaps = 4/130 (3%) Query: 1 MREELIAQLNKWHEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMK 60 M+ LI LN H+E K+QEI+D+I+ P E+ L RA NN+ Y+ A++ Sbjct: 1 MKNNLIELLNTLHKEAKHQEIIDKIEALPNEEKTPEIIGILARAYNNIDNYEKAVELLKS 60 Query: 61 TADKGKKDPLWHFRVGYAHYYLDELQDAIREFEIAHKLDPEDEDTIQFLEWSRKEAAEAP 120 T + GK +W++R+GY++YYLD +A + F A +L+P D D+ FL W +E Sbjct: 61 TEEYGKDTNVWNYRIGYSYYYLDNYLEAEKYFLKAVELNPTDSDSHLFLCWIYQEL---- 116 Query: 121 ADKESDEEEE 130 DKE D E+ Sbjct: 117 TDKEKDNSEK 126 >ref|ZP_00143421.1| TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA24957.1| TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 153 Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 5/119 (4%) Query: 13 HEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMKTADKGKKDPLWH 72 H+E K+QEI+D I+ + + E+ L RA NN+ Y+ AL+ D K +W+ Sbjct: 13 HKEGKHQEIIDEIEALSSEEKNSEIIGILARAYNNVENYEKALELLKSIEDTEKNTNIWN 72 Query: 73 FRVGYAHYYLDE-LQDAIREFEIAHKLDPEDEDTIQFLEWSRKEAAEAPADKESDEEEE 130 +R+GY++YYLD L++A + F A +L+P D D+ FL W +E DKE D E+ Sbjct: 73 YRIGYSYYYLDNYLEEAKKHFLKAIELNPTDSDSHLFLCWIYQEL----TDKEKDNSEQ 127 >ref|ZP_00143152.1| O-LINKED GLCNAC TRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA25279.1| O-LINKED GLCNAC TRANSFERASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 800 Score = 72.0 bits (175), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 64/109 (58%) Query: 1 MREELIAQLNKWHEEDKYQEIVDRIKETPTILIDDELATHLGRALNNLGRYKSALKWFMK 60 M+EE++ ++ ++ DK+QEI++ I+ P + EL + LGRA NN +Y+ L+ Sbjct: 1 MKEEILQKIESLYDLDKHQEIIEMIEALPAEQLSTELISELGRAYNNTQQYEKGLELLKS 60 Query: 61 TADKGKKDPLWHFRVGYAHYYLDELQDAIREFEIAHKLDPEDEDTIQFL 109 + +P W+ R+ Y++Y+LD+ ++A + A+KL PED T L Sbjct: 61 IEFEEANNPRWNCRIAYSYYFLDDFKNAEKYLLKANKLYPEDNFTCTLL 109 >ref|ZP_00145172.1| TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gb|EAA23230.1| TETRATRICOPEPTIDE REPEAT FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 660 Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 67/107 (62%), Gaps = 2/107 (1%) Query: 25 IKETPTILIDDELATHLGRALNNLGRYKSALKWFMKTADKGKKDPL-WHFRVGYAHYYLD 83 I+ P +++EL LGRA NN+ Y+ A++ +K+ + + + + W++R+GY++YYLD Sbjct: 2 IEALPAEQLNNELIGQLGRAYNNIQNYEKAIE-ILKSIEVEEGNTMRWNYRIGYSYYYLD 60 Query: 84 ELQDAIREFEIAHKLDPEDEDTIQFLEWSRKEAAEAPADKESDEEEE 130 + ++A + F AH++DPEDE+ +L E ++ DK+ +E + Sbjct: 61 DYENAEKCFVKAHEIDPEDEEIKNYLLNVYIELSKQVIDKDDSQESQ 107 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 206,505,948 Number of extensions: 8191849 Number of successful extensions: 27522 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 27542 Number of HSP's successfully gapped: 4 Length of query: 130 Length of database: 757,237,578 Length adjustment: 93 Effective length of query: 37 Effective length of database: 504,733,371 Effective search space: 18675134727 Effective search space used: 18675134727 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)