BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0100.p (242 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAK08610.1| GtpC [Agrobacterium tumefaciens] 178 9e-44 ref|ZP_00006568.1| COG0765: ABC-type amino acid transport system... 140 3e-32 ref|ZP_00127126.1| COG0765: ABC-type amino acid transport system... 136 3e-31 gb|EAH00911.1| unknown [environmental sequence] 132 9e-30 ref|NP_965165.1| ABC transporter permease component [Lactobacill... 131 2e-29 >gb|AAK08610.1| GtpC [Agrobacterium tumefaciens] Length = 222 Score = 178 bits (452), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 93/215 (43%), Positives = 128/215 (59%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 ++ DF YI++ LP LM GL+MT+ +S +AIL S +IG+ G+ RT V + V YV+ Sbjct: 2 VAMDFAYILEALPDLMSGLRMTLLVSFIAILLSCIIGVIGSIMRTSGVKALEYTVTAYVE 61 Query: 61 IIRNTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXX 120 IR TP LV IFFV++GLP +G++ G++ L+ W AF +ENFR G AV Sbjct: 62 FIRGTPFLVQIFFVFYGLPSLGLRFSIFWSGVIALTAWASAFQIENFRAGLAAVDRGMQD 121 Query: 121 XXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMA 180 RW I++PL R + P+ NT V+ IKNSAY+ IG+VELTFVAVDR+A Sbjct: 122 ASASLGLKRWHYGVFIVLPLAARAALPSSMNTIVATIKNSAYLQAIGLVELTFVAVDRIA 181 Query: 181 YDFKTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 YDF+ EM + AS + S +ERRL+ Sbjct: 182 YDFRAIEMFASICVIYLLCVFTASGVGSMVERRLN 216 >ref|ZP_00006568.1| COG0765: ABC-type amino acid transport system, permease component [Rhodobacter sphaeroides] Length = 222 Score = 140 bits (352), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 91/212 (42%), Positives = 125/212 (58%) Query: 4 DFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVDIIR 63 D+GYI+ P LM GL MT+ +S+LAILFSLL+GL+G A R + +S V YV+ IR Sbjct: 5 DWGYILAAFPDLMRGLGMTLMVSLLAILFSLLLGLAGCALRVSGIRPLSYAVRGYVEFIR 64 Query: 64 NTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXXXXX 123 TP LV IFFV++GLP +G+ L G++ L++W AF +E+FR G +V Sbjct: 65 GTPYLVQIFFVFYGLPSLGLTLSIFWSGVLALTIWASAFHIESFRAGLASVGREMHDASA 124 Query: 124 XXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMAYDF 183 R ++ P+ R + P+ NT V IKNSAY+ IG+VELTFVAVDR+A DF Sbjct: 125 SLGLRRLPHALLVVAPIALRSALPSTLNTVVGTIKNSAYLQAIGLVELTFVAVDRIAQDF 184 Query: 184 KTYEMXXXXXXXXXXXXWGASYLFSKIERRLD 215 ++ EM G S L ++ERRL+ Sbjct: 185 RSTEMFLSICVIYLVVILGVSALGHRLERRLN 216 >ref|ZP_00127126.1| COG0765: ABC-type amino acid transport system, permease component [Pseudomonas syringae pv. syringae B728a] Length = 234 Score = 136 bits (343), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 110/188 (58%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 ++FD+ + I TLP + + +T+ + ++AIL SL + + AA T KVPV+ R+V VYV+ Sbjct: 14 MTFDYAFAISTLPAFLKAIGVTLQVGLIAILTSLTVAVVNAAIATFKVPVLHRLVPVYVE 73 Query: 61 IIRNTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXX 120 + RNTPLL+ +FF+YF LP +GI++ ++ ++ GGA+ E R G +AV Sbjct: 74 LARNTPLLIQLFFIYFALPTLGIRVSGFASAVIAMTFLGGAYLTEILRAGIEAVPKTQIE 133 Query: 121 XXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMA 180 RWQ++RH+I+P +S PA V ++K + ++ + V E+ + +A Sbjct: 134 SGLSIGLSRWQLLRHVILPQAGILSLPALFANFVFLLKETTVVSAVAVPEILYTTKSYIA 193 Query: 181 YDFKTYEM 188 +KTYEM Sbjct: 194 LYYKTYEM 201 >gb|EAH00911.1| unknown [environmental sequence] Length = 228 Score = 132 bits (331), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 108/188 (57%) Query: 1 LSFDFGYIIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVD 60 ++FDF +I+ TLP + + +T+ + ++AI SLL+ L AA + P +SR+VA+YV+ Sbjct: 8 MTFDFAFILSTLPAFLKAVGVTLQVGLIAIATSLLVALINAALLVFRTPYLSRLVALYVE 67 Query: 61 IIRNTPLLVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXX 120 + RNTPLL+ +FFVYF LP +G + I+T++ GGA+ E R G +AV Sbjct: 68 LARNTPLLIQLFFVYFALPALGFNISGFWAAIITMTFLGGAYLTEVLRAGVEAVPLAQIE 127 Query: 121 XXXXXXXXRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMA 180 WQ++RH+I+P +S PA + ++K + ++ + V E+ + +A Sbjct: 128 SGKSIGLSDWQLLRHVILPQAGILSLPALFANFIFLLKETTVVSAVAVPEILYTTKSYIA 187 Query: 181 YDFKTYEM 188 +KTYEM Sbjct: 188 LYYKTYEM 195 >ref|NP_965165.1| ABC transporter permease component [Lactobacillus johnsonii NCC 533] gb|AAS09131.1| ABC transporter permease component [Lactobacillus johnsonii NCC 533] Length = 219 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 109/180 (60%) Query: 8 IIQTLPVLMVGLKMTVFISVLAILFSLLIGLSGAAARTLKVPVVSRIVAVYVDIIRNTPL 67 I Q+LP + G ++TV++S + I+ ++++GL + + VPV+ +IV+ YV++ RNTPL Sbjct: 6 IQQSLPQFVKGFQVTVWMSFVGIIGAMVVGLCCSLIQYFHVPVIDKIVSAYVELARNTPL 65 Query: 68 LVHIFFVYFGLPVIGIKLDAVTVGIVTLSLWGGAFAVENFRGGTDAVXXXXXXXXXXXXX 127 L+ +FF+Y+ PVIG+K+ A+T G++ L GGA+ E F GG D + Sbjct: 66 LIQLFFLYYAFPVIGLKMSAITCGLIGLIFLGGAYMAEAFTGGFDGISKNQIESGEAIGM 125 Query: 128 XRWQVVRHIIVPLGFRISFPAFSNTAVSVIKNSAYMTGIGVVELTFVAVDRMAYDFKTYE 187 +WQ+ R+++ P GF +S PA + + +IK ++ + I + ELT A+D + + + E Sbjct: 126 SKWQLARYVVFPQGFALSVPAIAANIIFLIKETSIFSVIAIPELTNTALDLIGLYYHSNE 185 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.331 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 268,458,830 Number of extensions: 9545906 Number of successful extensions: 34529 Number of sequences better than 1.0e-05: 1328 Number of HSP's gapped: 33535 Number of HSP's successfully gapped: 1329 Length of query: 242 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 120 Effective length of database: 425,995,500 Effective search space: 51119460000 Effective search space used: 51119460000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 124 (52.4 bits)