BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0099.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_069514.1| glutamine ABC transporter, ATP-binding protein ... 320 1e-86 ref|NP_465775.1| similar to amino acid ABC transporter (ATP-bind... 304 1e-81 ref|NP_471684.1| similar to amino acid ABC transporter (ATP-bind... 302 5e-81 ref|NP_622186.1| ABC-type polar amino acid transport system, ATP... 296 2e-79 ref|NP_976937.1| glutamine ABC transporter, ATP-binding protein ... 296 2e-79 >ref|NP_069514.1| glutamine ABC transporter, ATP-binding protein (glnQ) [Archaeoglobus fulgidus DSM 4304] pir||H69334 glutamine transport protein glnQ - Archaeoglobus fulgidus gb|AAB90561.1| glutamine ABC transporter, ATP-binding protein (glnQ) [Archaeoglobus fulgidus DSM 4304] Length = 242 Score = 320 bits (821), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 154/240 (64%), Positives = 191/240 (79%) Query: 7 KLTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFI 66 +L I +LHKRFGEL++L+GV +V EV+VIIGPSGSGKSTLLRCIN LE G+I + Sbjct: 3 QLEIIDLHKRFGELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILL 62 Query: 67 DEAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEEL 126 D I + + KVRQRIG+VFQ +NLFPHLT ++N+ LAP+K++K +K E L Sbjct: 63 DGVDITNSKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKMSKREAEELGMRL 122 Query: 127 LKQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMK 186 L++VG+ DKAD YP+QLSGGQQQRVAIAR+L MNPEV+LFDEVTSALDPE V++VLDVMK Sbjct: 123 LEKVGLEDKADYYPAQLSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDVMK 182 Query: 187 ALAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA G TM++VTHEMGF R+VGDR+IFMD GVIVE+G PEQIF NP+ ERTR+FL ++ Sbjct: 183 QLARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEEGKPEQIFSNPKHERTRKFLSMIL 242 >ref|NP_465775.1| similar to amino acid ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AC1356 amino acid ABC transporter (ATP-binding protein) homolog lmo2251 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00329.1| lmo2251 [Listeria monocytogenes] Length = 241 Score = 304 bits (778), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 140/239 (58%), Positives = 186/239 (77%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 + I+NLHK FG+L++L+G++ E+ S EV+V+IGPSGSGKST LRC+N LE G I + Sbjct: 2 INIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILFE 61 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 + ++ ++RQ++GMVFQ++NLFPH V+ENL+LAP+KV+ + A A LL Sbjct: 62 NKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSAAAKKHALSLL 121 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 ++VG++DKA SYPSQLSGGQQQRVAIAR+L MNP+V+LFDE TSALDPE V +VL VMK+ Sbjct: 122 EKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLSVMKS 181 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA G TM++VTHEMGF R+V DR++FMD GVI EQG PE++FGNPQ +RT+ FL V+ Sbjct: 182 LAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDFLGKVL 240 >ref|NP_471684.1| similar to amino acid ABC transporter (ATP-binding protein) [Listeria innocua] pir||AD1726 amino acid ABC transporter (ATP-binding protein) homolog lin2353 [imported] - Listeria innocua (strain Clip11262) emb|CAC97580.1| lin2353 [Listeria innocua] Length = 241 Score = 302 bits (773), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 139/239 (58%), Positives = 185/239 (77%) Query: 8 LTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFID 67 + I+NLHK FG+L++L+G++ E+ S EV+V+IGPSGSGKST LRC+N LE G I + Sbjct: 2 INIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILFE 61 Query: 68 EAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELL 127 + ++ ++RQ++GMVFQ++NLFPH V+ENL+LAP+KV+ + A LL Sbjct: 62 NKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSTAAKEHALSLL 121 Query: 128 KQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKA 187 ++VG++DKA SYPSQLSGGQQQRVAIAR+L MNP+V+LFDE TSALDPE V +VL VMK+ Sbjct: 122 EKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLSVMKS 181 Query: 188 LAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 LA G TM++VTHEMGF R+V DR++FMD GVI EQG PE++FGNPQ +RT+ FL V+ Sbjct: 182 LAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDFLGKVL 240 >ref|NP_622186.1| ABC-type polar amino acid transport system, ATPase component [Thermoanaerobacter tengcongensis] gb|AAM23790.1| ABC-type polar amino acid transport system, ATPase component [Thermoanaerobacter tengcongensis] Length = 240 Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 141/237 (59%), Positives = 183/237 (77%) Query: 10 IRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIFIDEA 69 + +++K FG L++L+GV +V EV+VIIGPSGSGKSTLLRCIN LE G++FID Sbjct: 4 VNDVYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGV 63 Query: 70 AIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEELLKQ 129 I ++ KVRQ++GMVFQ +NLFPHLT +EN+ LAP+KV+K K E A +LL + Sbjct: 64 KINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAK 123 Query: 130 VGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVMKALA 189 VG+ DK D YP +LSGGQ+QR+AIAR+L M PEV+LFDE TSALDPE V++VL+VMK LA Sbjct: 124 VGLLDKKDQYPIKLSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLA 183 Query: 190 HTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFLRNVM 246 + G TM++VTHEMGF R+VGDR+IFMD GVIVE+G PE+IF + ERTR+FL ++ Sbjct: 184 NEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKIL 240 >ref|NP_976937.1| glutamine ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39545.1| glutamine ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 255 Score = 296 bits (759), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 140/237 (59%), Positives = 183/237 (77%) Query: 6 PKLTIRNLHKRFGELQILRGVNFEVFSQEVIVIIGPSGSGKSTLLRCINGLEGINDGQIF 65 P L ++N++K + + +LR V+ +V S EVIVI+GPSG GKSTLLRC+NGLE I G++ Sbjct: 4 PLLQLQNIYKSYDDNPVLRDVSLQVSSGEVIVILGPSGCGKSTLLRCLNGLEDIQSGKML 63 Query: 66 IDEAAIEYTPASLQKVRQRIGMVFQSYNLFPHLTVMENLLLAPLKVQKKTKAEVLPRAEE 125 A + + QK+RQ+IGMVFQSY+LFPH+TV+EN+LL PLKVQK+ K E L +AE+ Sbjct: 64 FHNAPLPKNDGNWQKLRQKIGMVFQSYHLFPHMTVLENILLGPLKVQKRNKNEALKQAEQ 123 Query: 126 LLKQVGMSDKADSYPSQLSGGQQQRVAIARSLVMNPEVILFDEVTSALDPERVRDVLDVM 185 LL++VG+ +K D+YP +LSGGQQQR+AI R+L MNPEVILFDEVT+ALDPE V++VL+V+ Sbjct: 124 LLRKVGLLEKKDAYPRELSGGQQQRIAIVRTLCMNPEVILFDEVTAALDPEMVKEVLEVI 183 Query: 186 KALAHTGTTMIIVTHEMGFGRDVGDRIIFMDQGVIVEQGPPEQIFGNPQEERTRQFL 242 +LA G TM+IVTHEMGF + V DRIIFMD+G I E G P F +PQ ER + FL Sbjct: 184 MSLAKQGMTMLIVTHEMGFAKAVADRIIFMDEGEICETGDPTTFFTSPQTERAQHFL 240 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 344,453,509 Number of extensions: 13627178 Number of successful extensions: 129419 Number of sequences better than 1.0e-05: 22857 Number of HSP's gapped: 94316 Number of HSP's successfully gapped: 24524 Length of query: 246 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 124 Effective length of database: 425,995,500 Effective search space: 52823442000 Effective search space used: 52823442000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)