BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0090.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_347399.1| Transcriptional regulator, MarR family [Clostri... 248 6e-65 ref|NP_832163.1| Transcriptional regulator, MarR family [Bacillu... 239 3e-62 ref|NP_978812.1| transcriptional regulator, MarR family, putativ... 234 4e-61 ref|NP_470173.1| lin0831 [Listeria innocua] >gi|25303939|pir||AG... 216 1e-55 ref|NP_464366.1| lmo0840 [Listeria monocytogenes EGD-e] >gi|2530... 214 5e-55 >ref|NP_347399.1| Transcriptional regulator, MarR family [Clostridium acetobutylicum] pir||H96993 transcription regulator, MarR family [imported] - Clostridium acetobutylicum gb|AAK78739.1| Transcriptional regulator, MarR family [Clostridium acetobutylicum] Length = 157 Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 138/157 (87%) Query: 23 MNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSNVTKLAESLY 82 MNKEEQV M R+LFNKMAWLNK KME SLKGYKPSE+H IE IG+NVDSNVTKLA+SLY Sbjct: 1 MNKEEQVMMSLRELFNKMAWLNKLKMEDSLKGYKPSEVHYIECIGKNVDSNVTKLAKSLY 60 Query: 83 MTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHKEFQERDKAV 142 MTRGAISK+TKKL+EK ++ESYQK DNKKEIYFRLT +G I K+HE+LHKEFQERDK V Sbjct: 61 MTRGAISKMTKKLIEKNIVESYQKADNKKEIYFRLTEKGHEIYKLHENLHKEFQERDKVV 120 Query: 143 FEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKSE 179 FE VT+EQF++MLSF+EKYS+HLD+EIKK GI K E Sbjct: 121 FEQVTDEQFESMLSFIEKYSKHLDSEIKKLGIDTKLE 157 >ref|NP_832163.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] gb|AAP09364.1| Transcriptional regulator, MarR family [Bacillus cereus ATCC 14579] Length = 156 Score = 239 bits (609), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 115/156 (73%), Positives = 137/156 (87%) Query: 23 MNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSNVTKLAESLY 82 MNKEEQV FR+L+NK+ WLNK KME LKG+K SE+HCIE I N DSNVT+LAE+ Y Sbjct: 1 MNKEEQVMNGFRELYNKLVWLNKDKMEEGLKGFKSSEVHCIEYIENNADSNVTQLAEAFY 60 Query: 83 MTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHKEFQERDKAV 142 +TRGAIS++TKKL++KGL+ESYQK +NKKEIYFRLT QG+ I KIHE+LHKEFQERDKAV Sbjct: 61 VTRGAISRMTKKLIQKGLVESYQKSENKKEIYFRLTEQGKEIYKIHENLHKEFQERDKAV 120 Query: 143 FEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 FE VTEE+F++++SF+EKYSRHLDAEIKKQGI IKS Sbjct: 121 FEQVTEEEFNSIISFVEKYSRHLDAEIKKQGIHIKS 156 >ref|NP_978812.1| transcriptional regulator, MarR family, putative [Bacillus cereus ATCC 10987] gb|AAS41420.1| transcriptional regulator, MarR family, putative [Bacillus cereus ATCC 10987] Length = 156 Score = 234 bits (598), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/156 (73%), Positives = 136/156 (87%) Query: 23 MNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSNVTKLAESLY 82 MNKEEQV FR+++NK+ WLNK KME LKG+K SE+HCIE I N DSNVT+LAE+ Y Sbjct: 1 MNKEEQVMNGFREVYNKLVWLNKDKMEDGLKGFKSSEVHCIEYIENNADSNVTQLAEAFY 60 Query: 83 MTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHKEFQERDKAV 142 +TRGAIS++TKKL++KGLIESYQK +NKKEIYF+LT QG+ I KIHEDLHKEFQERDK V Sbjct: 61 VTRGAISRMTKKLMKKGLIESYQKSENKKEIYFKLTEQGKEIYKIHEDLHKEFQERDKVV 120 Query: 143 FEHVTEEQFDNMLSFMEKYSRHLDAEIKKQGIGIKS 178 FE VTE++FD+++SF+EKYSRHLDAEIKKQGI IKS Sbjct: 121 FEQVTEKEFDSIISFVEKYSRHLDAEIKKQGIHIKS 156 >ref|NP_470173.1| lin0831 [Listeria innocua] pir||AG1536 hypothetical protein lin0831 [imported] - Listeria innocua (strain Clip11262) emb|CAC96063.1| lin0831 [Listeria innocua] Length = 156 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 99/149 (66%), Positives = 127/149 (85%) Query: 23 MNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSNVTKLAESLY 82 M+K EQV RDLFNK+AW+NK KME +L+GYKPSE+HCIE I +N D NVTKLAE+ Y Sbjct: 1 MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEFIAKNEDPNVTKLAEAFY 60 Query: 83 MTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHKEFQERDKAV 142 MT+ AISKITKKL++KG IESYQKP+NKKEIYFRLT +G IN++H++LH+EF +RDK V Sbjct: 61 MTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTTKGAEINQVHDNLHQEFLDRDKVV 120 Query: 143 FEHVTEEQFDNMLSFMEKYSRHLDAEIKK 171 FE V+++Q++ +L F++KYSRHLDAE+KK Sbjct: 121 FEDVSDKQYEEVLQFVDKYSRHLDAEMKK 149 >ref|NP_464366.1| lmo0840 [Listeria monocytogenes EGD-e] pir||AH1179 hypothetical protein lmo0840 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98918.1| lmo0840 [Listeria monocytogenes] Length = 156 Score = 214 bits (546), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 98/149 (65%), Positives = 125/149 (83%) Query: 23 MNKEEQVKMEFRDLFNKMAWLNKTKMEVSLKGYKPSEIHCIESIGRNVDSNVTKLAESLY 82 M+K EQV RDLFNK+AW+NK KME +L+GYKPSE+HCIE I +N D NVTKLAE+ Y Sbjct: 1 MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYIAKNEDPNVTKLAEAFY 60 Query: 83 MTRGAISKITKKLVEKGLIESYQKPDNKKEIYFRLTGQGEVINKIHEDLHKEFQERDKAV 142 MT+ AISKITKKL++KG IESYQKP+NKKEIYFRLT +G IN++H++LH+EF +RDK V Sbjct: 61 MTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTTKGAEINQVHDELHQEFLDRDKVV 120 Query: 143 FEHVTEEQFDNMLSFMEKYSRHLDAEIKK 171 FE +++EQ+ +L F++KYSRHLD E+KK Sbjct: 121 FEDISDEQYAEVLKFVDKYSRHLDNEMKK 149 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 249,470,747 Number of extensions: 9721955 Number of successful extensions: 38463 Number of sequences better than 1.0e-05: 41 Number of HSP's gapped: 38482 Number of HSP's successfully gapped: 41 Length of query: 179 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 61 Effective length of database: 436,855,896 Effective search space: 26648209656 Effective search space used: 26648209656 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)