BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0084.p
         (181 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242572.1| BH1706~unknown conserved protein in B. subtilis...    71   9e-12
ref|NP_391584.1| ywkC [Bacillus subtilis] >gi|1176958|sp|P45870|...    68   1e-10

>ref|NP_242572.1| BH1706~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
 pir||B83863 hypothetical protein BH1706 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB05425.1| BH1706~unknown conserved protein in B. subtilis [Bacillus
           halodurans]
          Length = 174

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 96/178 (53%), Gaps = 13/178 (7%)

Query: 5   KTKDAAELLSVSQTTIKRWAAMFPDYFPKDRFGHYIFSEQEISLLKSIKERINHGEVLEY 64
           KTK+ +E L V+ TT++RW   F      +  GH +F ++ +++LK+I+ ++  G+ +  
Sbjct: 6   KTKEVSEQLGVNPTTVQRWVKFFGIQCETNEHGHLLFEKEHLTVLKAIQNQLKSGKKMRD 65

Query: 65  MNLGSAAG-IQPPVSQQENPLHHTQDWP--MGDMLSRIDYIERSLDHKADEVVSVQLLQQ 121
           + +      IQ P +Q   P+  T+ +       + +I  +E+ L  KAD+VVS Q+L+ 
Sbjct: 66  VVIEENEQLIQKPETQ---PMVATEQYEQRTKQFMEKIAELEKQLSQKADDVVSYQILKH 122

Query: 122 RAELEDLRQMIKQLAVSLETIQKPGAPSLSSHDELHPVAAKKLKTPPRKRGLLRNIFS 179
           RAE++++ + ++ L + +  +++             P+AA  +  P RKR  +R +FS
Sbjct: 123 RAEIDEMFKTLQSLELRMAKVEEQLEKQQEE----FPLAAGDV--PKRKRSFMR-LFS 173


>ref|NP_391584.1| ywkC [Bacillus subtilis]
 sp|P45870|YWKC_BACSU Hypothetical protein ywkC
 pir||S55435 hypothetical protein ywkC - Bacillus subtilis
 emb|CAA89882.1| Unknown [Bacillus subtilis]
 emb|CAB15720.1| ywkC [Bacillus subtilis subsp. subtilis str. 168]
          Length = 184

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 24/186 (12%)

Query: 4   LKTKDAAELLSVSQTTIKRWAAMFPDYFPKDRFGHYIFSEQEISLLKSIKERINHGEVLE 63
           + T   A  L VS  T++RW         ++  GHY F+ +++ +LKS++++I+ G  ++
Sbjct: 1   MNTNMVASELGVSAKTVQRWVKQLNLPAERNELGHYSFTAEDVKVLKSVQKQISEGTAIQ 60

Query: 64  YMNLGSAAG------IQPPVSQQENPLHH---------TQDWPMGDMLSRIDYIERSLDH 108
            ++L  +A       +Q   S  E  +            Q     ++++R+  +ER L  
Sbjct: 61  DIHLPKSAKKRTGFLVQKTSSDTERRIEQLEQKLDTLLQQRQDESELMARMSELERQLKQ 120

Query: 109 KADEVVSVQLLQQRAELEDLRQMIKQLAVSLETIQKPGAPSLSSHDELHPVAAKKLKTPP 168
           KADE VS QLLQ R E++D+   ++ L   ++       P           AA   KT  
Sbjct: 121 KADEGVSYQLLQHRREIDDILADLQSLTSQMKEFTAHSIP---------ETAAASEKTKT 171

Query: 169 RKRGLL 174
           RK+ LL
Sbjct: 172 RKKPLL 177


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.133    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 252,975,824
Number of extensions: 9275566
Number of successful extensions: 28915
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 28912
Number of HSP's successfully gapped: 3
Length of query: 181
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 63
Effective length of database: 436,855,896
Effective search space: 27521921448
Effective search space used: 27521921448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)