BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0076.p
         (507 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_244828.1| malate/quinone oxidoreductase [Bacillus halodur...   737   0.0  
ref|NP_979314.1| malate:quinone-oxidoreductase [Bacillus cereus ...   728   0.0  
ref|NP_656840.1| hypothetical protein predicted by GeneMark [Bac...   728   0.0  
ref|NP_832706.1| Malate:quinone oxidoreductase [Bacillus cereus ...   716   0.0  
ref|ZP_00184066.1| hypothetical protein Exigu048001 [Exiguobacte...   713   0.0  

>ref|NP_244828.1| malate/quinone oxidoreductase [Bacillus halodurans]
 sp|Q9Z9Q7|MQO_BACHD Probable malate:quinone oxidoreductase (Malate dehydrogenase
           [acceptor]) (MQO)
 pir||T44345 probable malate dehydrogenase (acceptor) (EC 1.1.99.16)
           [similarity] - Bacillus halodurans
 dbj|BAA75375.1| unknown [Bacillus halodurans]
 dbj|BAB07679.1| malate/quinone oxidoreductase [Bacillus halodurans]
          Length = 500

 Score =  737 bits (1903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/493 (71%), Positives = 417/493 (84%), Gaps = 1/493 (0%)

Query: 2   SNRQKTDVILIGAGIMSATLGSLLKELVPDWKITVFERRAGAGEESSNEWNNAGTGHSSL 61
           S + KTDVILIGAGIMSATLGSLLKEL P+W+I VFE+ A AGEESSNEWNNAGTGH++L
Sbjct: 3   SIQNKTDVILIGAGIMSATLGSLLKELKPEWEIKVFEKLANAGEESSNEWNNAGTGHAAL 62

Query: 62  CELNYTVEQPDGSIDISKAIKVNEEYQFSKQFWSYLVKSKRIQHPQDFIVPVPHMSFVQG 121
           CELNYT E+ DG+IDISKA+K+NE++Q S+QFW+YLV    I +PQDFI+P+PHMS VQG
Sbjct: 63  CELNYTAEKSDGTIDISKAVKINEQFQISRQFWAYLVSQNLISNPQDFIMPIPHMSLVQG 122

Query: 122 EADVTFLKKRFEALSQNPLFQGMEFSEDPEQLMEWIPLMMKDRRINQPIAATRIESGTDV 181
           E +V +LKKRF+ALS  PLF+GMEFS DPE+L EWIPL+M+ R  N+PIAAT+I+SGTDV
Sbjct: 123 EDNVAYLKKRFKALSNIPLFEGMEFSNDPEKLKEWIPLVMEGRTSNEPIAATKIDSGTDV 182

Query: 182 NFGALTRILFDHLQSNNTDIRYQHNVDDIKRAGDGSWDLKVRNLENGTTTRHSAKFVFIG 241
           NFGALTR+LF+HL+  N ++ Y+H+V DIKR  DGSW +KV+ +E+GT   H+A FVFIG
Sbjct: 183 NFGALTRMLFEHLKEQNVEVHYKHSVKDIKRTSDGSWSVKVQEIESGTIEYHTANFVFIG 242

Query: 242 GGGGSLHLLQKSGIPEGKGIGGFPVSGLFMVCQKPDIVAQHHAKVYGKAALGAPPMSVPH 301
           GGGGSL LLQK+GIPE K IGGFPVSGLFMVC  P++V QHHAKVYGKA +GAPPMSVPH
Sbjct: 243 GGGGSLPLLQKTGIPESKNIGGFPVSGLFMVCNNPEVVEQHHAKVYGKAKVGAPPMSVPH 302

Query: 302 LDTRVIDKKESLFFGPFAGFSPKFLKYGSVFDLITSVKPGNLTTMLAAGAKNLSLTKYLI 361
           LDTR ID K+SL FGPFAGFSPKFLK GS FDLI SVKP N+ TMLAAGAK +SLTKYLI
Sbjct: 303 LDTRYIDNKKSLLFGPFAGFSPKFLKTGSNFDLIGSVKPYNVFTMLAAGAKEMSLTKYLI 362

Query: 362 GQVMLSKDQRIEALREFVPGAQSGDWDLVVAGQRVQIIKDT-AAGKGTLQFGTEVISSAD 420
            QVMLSK++R+  LREF+P A+S DWD+VVAGQRVQ+IKDT A GKGTLQFGTEV+SSAD
Sbjct: 363 QQVMLSKEKRMAELREFMPNAKSEDWDIVVAGQRVQVIKDTEAGGKGTLQFGTEVVSSAD 422

Query: 421 GSIAALLGASPGASTAVSVMLEVIGKCFPQQLKAWEPKIKEMIPAYGVTLMENPKLINEI 480
           GSIAALLGASPGASTAV VMLEV+ KCFP  +  W+PKIKEMIP+YGV+L EN +L  EI
Sbjct: 423 GSIAALLGASPGASTAVHVMLEVLEKCFPHHMLEWQPKIKEMIPSYGVSLAENRELFQEI 482

Query: 481 QKLTDRSLNLTSR 493
            + T  +L L+ +
Sbjct: 483 HQSTAEALGLSEK 495


>ref|NP_979314.1| malate:quinone-oxidoreductase [Bacillus cereus ATCC 10987]
 gb|AAS41922.1| malate:quinone-oxidoreductase [Bacillus cereus ATCC 10987]
          Length = 500

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/495 (70%), Positives = 421/495 (85%), Gaps = 2/495 (0%)

Query: 1   MSN-RQKTDVILIGAGIMSATLGSLLKELVPDWKITVFERRAGAGEESSNEWNNAGTGHS 59
           MSN +QKTDVILIGAGIMSATLGSLLKEL P+W+I VFE+ A AGEESSNEWNNAGTGHS
Sbjct: 1   MSNMQQKTDVILIGAGIMSATLGSLLKELAPEWEIKVFEKLASAGEESSNEWNNAGTGHS 60

Query: 60  SLCELNYTVEQPDGSIDISKAIKVNEEYQFSKQFWSYLVKSKRIQHPQDFIVPVPHMSFV 119
           +LCELNYT E+ DGSIDISKA+KVNE++Q S+QFW+YLVKSK I++PQDFI+P+PHMS V
Sbjct: 61  ALCELNYTSEKSDGSIDISKAVKVNEQFQLSRQFWAYLVKSKLIRNPQDFIMPLPHMSLV 120

Query: 120 QGEADVTFLKKRFEALSQNPLFQGMEFSEDPEQLMEWIPLMMKDRRINQPIAATRIESGT 179
           QGE +V FLK RFEALS+NPLFQGMEFS+ PE L +W+PL+M+ R  N+P+AAT+I+SGT
Sbjct: 121 QGEKNVQFLKNRFEALSKNPLFQGMEFSDAPETLKKWLPLIMEGRTSNEPMAATKIDSGT 180

Query: 180 DVNFGALTRILFDHLQSNNTDIRYQHNVDDIKRAGDGSWDLKVRNLENGTTTRHSAKFVF 239
           DVNFGALTR+LFD+L++ + ++ Y+H+V++IKR  +G W++KV ++ +G    H+AKFVF
Sbjct: 181 DVNFGALTRMLFDYLKTKDVELNYKHSVENIKRTKNGLWEVKVHDMNSGKIEHHTAKFVF 240

Query: 240 IGGGGGSLHLLQKSGIPEGKGIGGFPVSGLFMVCQKPDIVAQHHAKVYGKAALGAPPMSV 299
           IGGGGGSL LLQK+GIPE K IGGFPVSGLFMVC+   +V QHHAKVYGKA +GAPPMSV
Sbjct: 241 IGGGGGSLPLLQKTGIPESKHIGGFPVSGLFMVCKNQKVVEQHHAKVYGKAKVGAPPMSV 300

Query: 300 PHLDTRVIDKKESLFFGPFAGFSPKFLKYGSVFDLITSVKPGNLTTMLAAGAKNLSLTKY 359
           PHLDTR ID K++L FGPFAGFSPKFLK GS  DLI SVKP N+ TMLAAG K + LTKY
Sbjct: 301 PHLDTRYIDNKKALLFGPFAGFSPKFLKTGSNLDLIGSVKPNNVLTMLAAGVKEMGLTKY 360

Query: 360 LIGQVMLSKDQRIEALREFVPGAQSGDWDLVVAGQRVQIIKDT-AAGKGTLQFGTEVISS 418
           LI QVMLS ++R+E LREF+P A+S DWD+VVAGQRVQ+IKDT A GKGTLQFGTEV+S+
Sbjct: 361 LIQQVMLSHEKRMEELREFIPNAKSEDWDIVVAGQRVQVIKDTDAGGKGTLQFGTEVVSA 420

Query: 419 ADGSIAALLGASPGASTAVSVMLEVIGKCFPQQLKAWEPKIKEMIPAYGVTLMENPKLIN 478
           ADGSIAALLGASPGASTAV VMLEV+ KCFP ++  WE KIKEMIP+YG++L ENP+L  
Sbjct: 421 ADGSIAALLGASPGASTAVHVMLEVLEKCFPSRMVEWEGKIKEMIPSYGISLTENPRLFQ 480

Query: 479 EIQKLTDRSLNLTSR 493
           ++   T R+L L  +
Sbjct: 481 DLHTSTGRTLGLNEK 495


>ref|NP_656840.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_845308.1| malate:quinone-oxidoreductase [Bacillus anthracis str. Ames]
 sp|Q81P44|MQO_BACAA Probable malate:quinone oxidoreductase (Malate dehydrogenase
           [acceptor]) (MQO)
 gb|AAP26794.1| malate:quinone-oxidoreductase [Bacillus anthracis str. Ames]
          Length = 500

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/495 (70%), Positives = 421/495 (85%), Gaps = 2/495 (0%)

Query: 1   MSN-RQKTDVILIGAGIMSATLGSLLKELVPDWKITVFERRAGAGEESSNEWNNAGTGHS 59
           MSN +QKTDVILIGAGIMSATLGSLLKEL P+W+I VFE+ A AGEESSNEWNNAGTGHS
Sbjct: 1   MSNMQQKTDVILIGAGIMSATLGSLLKELAPEWEIKVFEKLASAGEESSNEWNNAGTGHS 60

Query: 60  SLCELNYTVEQPDGSIDISKAIKVNEEYQFSKQFWSYLVKSKRIQHPQDFIVPVPHMSFV 119
           +LCELNYT E+ DGSIDISKA+KVNE++Q S+QFW+YLVKSK I++PQDFI+P+PHMS V
Sbjct: 61  ALCELNYTSEKSDGSIDISKAVKVNEQFQLSRQFWAYLVKSKLIRNPQDFIMPLPHMSLV 120

Query: 120 QGEADVTFLKKRFEALSQNPLFQGMEFSEDPEQLMEWIPLMMKDRRINQPIAATRIESGT 179
           QGE +V FLK RFEALS+NPLFQGMEFS+ PE L +W+PL+M+ R  N+P+AAT+I+SGT
Sbjct: 121 QGEKNVEFLKNRFEALSKNPLFQGMEFSDAPETLKKWLPLIMEGRTSNEPMAATKIDSGT 180

Query: 180 DVNFGALTRILFDHLQSNNTDIRYQHNVDDIKRAGDGSWDLKVRNLENGTTTRHSAKFVF 239
           DVNFGALTR+LFD+L++ + ++ Y+H+V++IKR  +G W++KV ++ +G    H+AKFVF
Sbjct: 181 DVNFGALTRMLFDYLKTKDVELNYKHSVENIKRTKNGLWEVKVHDMNSGKIEHHTAKFVF 240

Query: 240 IGGGGGSLHLLQKSGIPEGKGIGGFPVSGLFMVCQKPDIVAQHHAKVYGKAALGAPPMSV 299
           IGGGGGSL LLQK+GIPE K IGGFPVSGLFMVC+   +V QHHAKVYGKA +GAPPMSV
Sbjct: 241 IGGGGGSLPLLQKTGIPESKHIGGFPVSGLFMVCKNQKVVEQHHAKVYGKAKVGAPPMSV 300

Query: 300 PHLDTRVIDKKESLFFGPFAGFSPKFLKYGSVFDLITSVKPGNLTTMLAAGAKNLSLTKY 359
           PHLDTR ID K++L FGPFAGFSPKFLK GS  DLI SVKP N+ TMLAAG K + LTKY
Sbjct: 301 PHLDTRYIDNKKALLFGPFAGFSPKFLKTGSNLDLIGSVKPNNVLTMLAAGVKEMGLTKY 360

Query: 360 LIGQVMLSKDQRIEALREFVPGAQSGDWDLVVAGQRVQIIKDT-AAGKGTLQFGTEVISS 418
           LI QVMLS ++R+E LREF+P A+S DWD+VVAGQRVQ+IKDT A GKGTLQFGTEV+S+
Sbjct: 361 LIQQVMLSHEKRMEELREFIPNAKSEDWDIVVAGQRVQVIKDTDAGGKGTLQFGTEVVSA 420

Query: 419 ADGSIAALLGASPGASTAVSVMLEVIGKCFPQQLKAWEPKIKEMIPAYGVTLMENPKLIN 478
           ADGSIAALLGASPGASTAV VMLEV+ KCFP ++  WE KIKEMIP+YG++L ENP+L  
Sbjct: 421 ADGSIAALLGASPGASTAVHVMLEVLEKCFPSRMVEWEGKIKEMIPSYGISLTENPRLFQ 480

Query: 479 EIQKLTDRSLNLTSR 493
           ++   T R+L L  +
Sbjct: 481 DLHTSTGRTLGLNEK 495


>ref|NP_832706.1| Malate:quinone oxidoreductase [Bacillus cereus ATCC 14579]
 sp|Q81C25|MQO_BACCR Probable malate:quinone oxidoreductase (Malate dehydrogenase
           [acceptor]) (MQO)
 gb|AAP09907.1| Malate:quinone oxidoreductase [Bacillus cereus ATCC 14579]
          Length = 497

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/491 (69%), Positives = 414/491 (84%), Gaps = 1/491 (0%)

Query: 4   RQKTDVILIGAGIMSATLGSLLKELVPDWKITVFERRAGAGEESSNEWNNAGTGHSSLCE 63
           +QKTDVILIGAGIMSATLGSLLKEL P+W+I VFE+ A AGEESSNEWNNAGTGHS+LCE
Sbjct: 2   QQKTDVILIGAGIMSATLGSLLKELAPEWEIKVFEKLASAGEESSNEWNNAGTGHSALCE 61

Query: 64  LNYTVEQPDGSIDISKAIKVNEEYQFSKQFWSYLVKSKRIQHPQDFIVPVPHMSFVQGEA 123
           LNYT E+ DGSIDISKA+KVNE++Q S+QFW+YLVKSK I++PQDFI+P+PHMS VQG+ 
Sbjct: 62  LNYTSEKADGSIDISKAVKVNEQFQLSRQFWAYLVKSKLIRNPQDFIMPLPHMSLVQGKK 121

Query: 124 DVTFLKKRFEALSQNPLFQGMEFSEDPEQLMEWIPLMMKDRRINQPIAATRIESGTDVNF 183
           +V FLK RFEALS+NPLFQGMEFS+ PE L +W+PL+M+ R  N+P+AAT+I+SGTDVNF
Sbjct: 122 NVEFLKNRFEALSKNPLFQGMEFSDAPETLKKWLPLIMEGRTSNEPMAATKIDSGTDVNF 181

Query: 184 GALTRILFDHLQSNNTDIRYQHNVDDIKRAGDGSWDLKVRNLENGTTTRHSAKFVFIGGG 243
           GALTR+LFD+L++ N ++ Y+H+V++IKR  +G W++KV ++ +G    H+AKFVFIGGG
Sbjct: 182 GALTRMLFDYLKTKNVELNYKHSVENIKRTKNGLWEVKVHDMNSGKIEHHTAKFVFIGGG 241

Query: 244 GGSLHLLQKSGIPEGKGIGGFPVSGLFMVCQKPDIVAQHHAKVYGKAALGAPPMSVPHLD 303
           GGSL LLQK+GIPE K IGGFPVSGLFMVC+   +V QHHAKVYGKA +GAPPMSVPHLD
Sbjct: 242 GGSLPLLQKTGIPESKHIGGFPVSGLFMVCKNQKVVEQHHAKVYGKAKVGAPPMSVPHLD 301

Query: 304 TRVIDKKESLFFGPFAGFSPKFLKYGSVFDLITSVKPGNLTTMLAAGAKNLSLTKYLIGQ 363
           TR ID K++L FGPFAGFSPKFLK GS  DLI SVKP N+ TMLAAG K + LTKYLI Q
Sbjct: 302 TRYIDNKKALLFGPFAGFSPKFLKTGSNLDLIGSVKPNNVLTMLAAGVKEMGLTKYLIQQ 361

Query: 364 VMLSKDQRIEALREFVPGAQSGDWDLVVAGQRVQIIKDT-AAGKGTLQFGTEVISSADGS 422
           VMLS ++R+     F+P A+S DWD+VVAGQRVQ+IKDT A GKGTLQFGTEV+S+ADGS
Sbjct: 362 VMLSHEKRMLDFPAFIPNAKSEDWDIVVAGQRVQVIKDTDAGGKGTLQFGTEVVSAADGS 421

Query: 423 IAALLGASPGASTAVSVMLEVIGKCFPQQLKAWEPKIKEMIPAYGVTLMENPKLINEIQK 482
           IAALLGASPGASTAV VMLEV+ KCFP ++  WE KIKEMIP+YG++L ENP+L  ++  
Sbjct: 422 IAALLGASPGASTAVHVMLEVLEKCFPSRMIEWEEKIKEMIPSYGISLTENPRLFQDLHT 481

Query: 483 LTDRSLNLTSR 493
            T R+L L  +
Sbjct: 482 STGRTLGLNEK 492


>ref|ZP_00184066.1| hypothetical protein Exigu048001 [Exiguobacterium sp. 255-15]
          Length = 497

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 409/487 (83%), Gaps = 1/487 (0%)

Query: 5   QKTDVILIGAGIMSATLGSLLKELVPDWKITVFERRAGAGEESSNEWNNAGTGHSSLCEL 64
           ++TDVILIGAG+MSATLG LLKEL PD KI VFE+ A AGEESSNEWNNAGTGH++LCEL
Sbjct: 6   KQTDVILIGAGVMSATLGVLLKELAPDMKIKVFEKLASAGEESSNEWNNAGTGHAALCEL 65

Query: 65  NYTVEQPDGSIDISKAIKVNEEYQFSKQFWSYLVKSKRIQHPQDFIVPVPHMSFVQGEAD 124
           NYT E  DG+IDISKA+KVNE++Q S+QFWS+LVK + + +P++FI+P+PHMS V+G  +
Sbjct: 66  NYTTENADGTIDISKAVKVNEQFQLSRQFWSHLVKEQVLPNPKEFIMPIPHMSMVEGAEN 125

Query: 125 VTFLKKRFEALSQNPLFQGMEFSEDPEQLMEWIPLMMKDRRINQPIAATRIESGTDVNFG 184
           VTFLKKR EALS NPLF+GMEFSEDPEQL EWIPL+M+ R   +PIAAT+I+SGTDVNFG
Sbjct: 126 VTFLKKRLEALSANPLFKGMEFSEDPEQLKEWIPLIMEGRTSPEPIAATKIDSGTDVNFG 185

Query: 185 ALTRILFDHLQSNNTDIRYQHNVDDIKRAGDGSWDLKVRNLENGTTTRHSAKFVFIGGGG 244
           ALTRILFDHL+  + +I Y H V+D+KR  DG W++KV+N  +     H+AKFVFIGGGG
Sbjct: 186 ALTRILFDHLKQLDVEINYGHGVEDLKRV-DGGWEIKVKNERDNRIEHHTAKFVFIGGGG 244

Query: 245 GSLHLLQKSGIPEGKGIGGFPVSGLFMVCQKPDIVAQHHAKVYGKAALGAPPMSVPHLDT 304
           GSL LLQK+GIPE K IGGFPVSGLF+VC+ P+I  +HHAKVYGKA +GAPPMSVPHLDT
Sbjct: 245 GSLPLLQKTGIPESKQIGGFPVSGLFLVCKNPEIAERHHAKVYGKAKVGAPPMSVPHLDT 304

Query: 305 RVIDKKESLFFGPFAGFSPKFLKYGSVFDLITSVKPGNLTTMLAAGAKNLSLTKYLIGQV 364
           R ID ++SL FGPFAGFSPKFLK GS  DLITSVKP N+ TMLAAGAK + LTKYLI QV
Sbjct: 305 RYIDGQKSLLFGPFAGFSPKFLKTGSNLDLITSVKPNNVLTMLAAGAKEMGLTKYLIEQV 364

Query: 365 MLSKDQRIEALREFVPGAQSGDWDLVVAGQRVQIIKDTAAGKGTLQFGTEVISSADGSIA 424
           +LS +QR+  LREF+P A++ DWD+VVAGQRVQ+IKDT  GKG LQFGTEV+S+ADGS+A
Sbjct: 365 LLSTEQRMNELREFIPNAKTEDWDVVVAGQRVQVIKDTPQGKGALQFGTEVVSAADGSVA 424

Query: 425 ALLGASPGASTAVSVMLEVIGKCFPQQLKAWEPKIKEMIPAYGVTLMENPKLINEIQKLT 484
           ALLGASPGASTAV VMLEV+ KCFP QL +WE KIKEMIP+YG +L+ NP+L ++I   T
Sbjct: 425 ALLGASPGASTAVPVMLEVLAKCFPDQLPSWEAKIKEMIPSYGTSLVANPELFDQIHAET 484

Query: 485 DRSLNLT 491
            ++L LT
Sbjct: 485 TKTLELT 491


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 757,440,982
Number of extensions: 32844149
Number of successful extensions: 100902
Number of sequences better than 1.0e-05: 93
Number of HSP's gapped: 100719
Number of HSP's successfully gapped: 93
Length of query: 507
Length of database: 757,237,578
Length adjustment: 130
Effective length of query: 377
Effective length of database: 404,274,708
Effective search space: 152411564916
Effective search space used: 152411564916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)