BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0599.0071.p
         (179 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_977506.1| conserved hypothetical protein [Bacillus cereus...   133   2e-30
ref|ZP_00118735.1| hypothetical protein [Cytophaga hutchinsonii]      102   3e-21
ref|ZP_00184427.1| hypothetical protein Exigu013001 [Exiguobacte...   100   2e-20

>ref|NP_977506.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS40114.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 167

 Score =  133 bits (335), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 4/165 (2%)

Query: 7   LQRFEETANHYIQELDSFSMEQLKRQPAEDEWSLGQMYQHLINSALYMQLRNIEQCLASS 66
           +++FEE A +Y++EL+ +S+EQ + +P+ +EWSLGQMY HLI S  YMQL  I +C    
Sbjct: 1   MKKFEELATYYMEELEKYSIEQFRIKPSAEEWSLGQMYNHLITST-YMQLDAITKC---R 56

Query: 67  EDAAAPITVKTKEGTAIFDQGSFPPIRVHVPPSPQYTPGQPESKEQLIQGLYTVIGRMKE 126
            +  +    KT  G  ++  G+FP I++ +P  P YTP  P +KE + + L  +I  +K+
Sbjct: 57  TELPSVTNKKTDMGEKVYMMGAFPDIKIKLPDHPGYTPENPANKEDVQKQLLELITVVKD 116

Query: 127 ILPQLEKGTMQNTVPHPRFGPLNAQEWFLLIEMHYRHHLLQMGRL 171
           I P L        V HP  G L+A EWF LI MH+ HHL Q  RL
Sbjct: 117 IEPTLSSIPRDCKVEHPGLGYLHAAEWFQLISMHFAHHLRQKERL 161


>ref|ZP_00118735.1| hypothetical protein [Cytophaga hutchinsonii]
          Length = 194

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 89/158 (56%), Gaps = 4/158 (2%)

Query: 14  ANHYIQELDSFSMEQLKRQPAEDEWSLGQMYQHLINSALYMQLRNIEQCLASSEDAAAPI 73
           A ++++ELD +   Q K++   + W++GQ+Y HL+  +  + ++ I++CLA  +  A P 
Sbjct: 14  AKYWLKELDFYGNNQFKKKVTPNGWTIGQIYDHLLIYSQEVHIKAIQECLAKKQ--AGPK 71

Query: 74  TVKTKEGTAIFDQGSFPPIRVHVPPSPQYTPGQPESKEQLIQGLYTVIGRMKEILPQLEK 133
             KT  G   F  GS+ P +    P  +  PGQP S E++    Y  +  + ++  +++ 
Sbjct: 72  EGKTFNGFLQFAYGSYLPFKHKSNPYKE--PGQPLSTEKVKDDFYRFLKLLHKVAKEIDY 129

Query: 134 GTMQNTVPHPRFGPLNAQEWFLLIEMHYRHHLLQMGRL 171
                 + HP+ G L+A+EWF LIEMH+RHH+ Q  +L
Sbjct: 130 KKPTAKIKHPKLGYLSAEEWFKLIEMHFRHHIKQKKKL 167


>ref|ZP_00184427.1| hypothetical protein Exigu013001 [Exiguobacterium sp. 255-15]
          Length = 166

 Score =  100 bits (248), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 4/160 (2%)

Query: 16  HYIQELDSFSMEQLKRQPAEDEWSLGQMYQHLINSALYMQLRNIEQCLASSEDAAAPITV 75
           H  QELD ++ +Q+        WSLGQMY H++  A +  L  +  C + + D A     
Sbjct: 9   HLYQELDRYTEDQIHHISQPGVWSLGQMYDHILLVA-HEYLDEVGNCASLTTDTADG--- 64

Query: 76  KTKEGTAIFDQGSFPPIRVHVPPSPQYTPGQPESKEQLIQGLYTVIGRMKEILPQLEKGT 135
           KT  G  +F Q +FPPI++ +P      P   +S+++L Q L  ++ RM++   QL +  
Sbjct: 65  KTPFGEELFRQQAFPPIKIRLPDEMNAPPDNTDSRDRLKQRLLELVKRMEDWSQQLGQIE 124

Query: 136 MQNTVPHPRFGPLNAQEWFLLIEMHYRHHLLQMGRLTQFL 175
            Q    H  FG LNAQEW+ LIEMH RHH  Q   L Q L
Sbjct: 125 PQRKSRHGGFGWLNAQEWYQLIEMHTRHHFRQKKELEQVL 164


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.133    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 262,475,866
Number of extensions: 10425062
Number of successful extensions: 27824
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 27821
Number of HSP's successfully gapped: 6
Length of query: 179
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 61
Effective length of database: 436,855,896
Effective search space: 26648209656
Effective search space used: 26648209656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 122 (51.6 bits)