BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0064.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAJ50780.1| unknown [environmental sequence] 63 4e-09 ref|NP_715792.1| lipoprotein, putative [Shewanella oneidensis MR... 61 2e-08 ref|NP_242350.1| BH1484~unknown conserved protein in others [Bac... 59 6e-08 gb|EAK39432.1| unknown [environmental sequence] 54 2e-06 >gb|EAJ50780.1| unknown [environmental sequence] Length = 258 Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 106/240 (44%), Gaps = 38/240 (15%) Query: 3 WTWRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVSGADTDT-IE 61 +T + + GC++ V A + ++L L+A L +LV + G +E+ G + T I+ Sbjct: 16 FTVGVSLTGCIINVNAAGMPDLDHQQRELSLDAQDLQELVAETGAGSLEIIGVEGLTQIK 75 Query: 62 VTAVVTTKGISMDKLKLKLRAEGAAAYLDASFGSQM-LAMGSGAVDLVITLPRELAVEVD 120 + A + + S K+ L L + A L A F S + S +DL + LP LA+++D Sbjct: 76 LVADIYSNDDS--KVILTLEKKANKAQLKADFESHSSFSNYSPYIDLKLQLPAGLALDID 133 Query: 121 S-------------------------HRDGKLKVADLSAPLEVDNVNGDLEVID------ 149 H + + D S +EV VNG+L ++D Sbjct: 134 DGSGAILINKMTADIKVKDGSGELVIHGGNNVSIDDGSGAIEVSQVNGNLAIVDGSGGIQ 193 Query: 150 ---TKGPVTLSNRDGDITVRNIETDVNIHNINGHIAVTQVEGSVEAAVGDGSLELDHVTG 206 KG +T+ + G+I V N++ V I++ +G I V +G + G G + D + G Sbjct: 194 VNDIKGSITIDDGSGEINVANVQNTVTINDGSGDINVVNTKGLTILSAGSGDVSFDKIDG 253 >ref|NP_715792.1| lipoprotein, putative [Shewanella oneidensis MR-1] gb|AAN53237.1| lipoprotein, putative [Shewanella oneidensis MR-1] Length = 258 Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 109/242 (45%), Gaps = 42/242 (17%) Query: 3 WTWRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVSGADTDT-IE 61 +T + + GC++ V A E ++L L+A ++ LV G +E+ G + T I+ Sbjct: 16 FTAGIFLTGCIINVNAAGMLELDHQQRELTLDAQEVQTLVAKTGAGSLEIIGVEGLTQIK 75 Query: 62 VTAVVTTKGISMDKLKLKLRAEGAA--AYLDASFGSQM-LAMGSGAVDLVITLPRELAVE 118 + A + S D K+ L E AA A L A+F S + S +DL + +P LA++ Sbjct: 76 LVADIY----SNDDSKVILSLEKAANRAELKANFESHSSFSNYSPYIDLKLQVPAGLALD 131 Query: 119 VDS-------------------------HRDGKLKVADLSAPLEVDNVNGDLEVID---- 149 +D H + + D S +EV VNG+L ++D Sbjct: 132 IDDGSGAIVINKMTADIKVKDGSGELVIHGGNNVSIDDGSGAIEVSQVNGNLTIVDGSGG 191 Query: 150 -----TKGPVTLSNRDGDITVRNIETDVNIHNINGHIAVTQVEGSVEAAVGDGSLELDHV 204 KG +T+ + G+I V N+++ V I++ +G+I V +G + G G + D + Sbjct: 192 IQINDIKGSITIDDGSGEIEVANVQSTVTINDGSGNINVVNTKGLTILSAGLGDVSFDKI 251 Query: 205 TG 206 G Sbjct: 252 DG 253 >ref|NP_242350.1| BH1484~unknown conserved protein in others [Bacillus halodurans] pir||D83835 hypothetical protein BH1484 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05203.1| BH1484~unknown conserved protein in others [Bacillus halodurans] Length = 250 Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 62/250 (24%), Positives = 115/250 (46%), Gaps = 39/250 (15%) Query: 5 WRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVSGAD-TDTIEVT 63 + LM+ GC L+ +GE L ++A +D G + + G D T++IEV Sbjct: 10 FLLMMTGCNLV--TVEEGE------ILSVDAQGAGSFTLDLAEGNVTIRGDDETESIEVD 61 Query: 64 AVVTTKGISMDKLKLKLRAEGAAAYLD-----ASFGSQMLAMGS---GAVDLVITLPREL 115 G S ++ R +A L S +++L G + L+IT+P +L Sbjct: 62 VSYAVTGESEEEAN-AFREAFTSAILQREGDVVSLNTKILGPDQAEEGRIHLMITVPSDL 120 Query: 116 AVEVDSHRDGKLKVADLS---------APLEVDNVNGDLEVID---------TKGPVTLS 157 ++E+ +G+L + + + P+ + + G++ + D GP+T+ Sbjct: 121 SIEL-KQAEGELLIENATNDLHINQGAGPIHLRQIRGEIHITDGAGRINVAEVDGPITVH 179 Query: 158 NRDGDITVRNIETDVNIHNINGHIAVTQVEGSVEAAVGDGSLELDHVTGDAVISQTGNGE 217 + GD+T++ I DV + + I + +V GSVE G G + +D + G+ ++ TG+GE Sbjct: 180 TKTGDVTMKTITGDVAVIAGSSAITIEEVNGSVEVRGGQGKMTIDSIAGN--VTLTGDGE 237 Query: 218 IKLGAIGGNV 227 L I G + Sbjct: 238 RNLSNIEGEL 247 >gb|EAK39432.1| unknown [environmental sequence] Length = 258 Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 38/240 (15%) Query: 3 WTWRLMIVGCLLLVTACSKGEETSSTQKLELEADKLTKLVIDNRNGEIEVSGADTDT-IE 61 +T + + GC++ V A + ++L L+A L +LV + G +E+ G + T I+ Sbjct: 16 FTVGVSLTGCIINVNAAGMPDLDHQQRELSLDAQDLQELVAETGAGSLEIIGVEGLTQIK 75 Query: 62 VTAVVTTKGISMDKLKLKLRAEGAAAYLDASFGSQM-LAMGSGAVDLVITLPRELAVEVD 120 + A + + S K+ L L + A L A F S S +DL + +P LA+++D Sbjct: 76 LVADIYSNDDS--KVILTLEKKANKAKLKADFESHSSFNNYSPYIDLKLQVPAGLALDID 133 Query: 121 S-------------------------HRDGKLKVADLSAPLEVDNVNGDLEVID------ 149 H + + D S +EV VNG+L ++D Sbjct: 134 DGSGAMFINKMTADIKVKDGSGELVIHGGNNVSIDDGSGAIEVSQVNGNLAIVDGSGGIQ 193 Query: 150 ---TKGPVTLSNRDGDITVRNIETDVNIHNINGHIAVTQVEGSVEAAVGDGSLELDHVTG 206 KG +T+ + G+I V N+++ V I++ +G I V +G + G G + D + G Sbjct: 194 VNDIKGSITIDDGSGEIEVANVQSTVTINDGSGDINVVNTKGLTILSAGSGDVSFDKIDG 253 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.312 0.132 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 316,939,834 Number of extensions: 12557311 Number of successful extensions: 32196 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 32186 Number of HSP's successfully gapped: 10 Length of query: 230 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 109 Effective length of database: 428,710,599 Effective search space: 46729455291 Effective search space used: 46729455291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 124 (52.4 bits)