BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0052.p (503 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00184063.1| hypothetical protein Exigu047601 [Exiguobacte... 467 e-130 ref|NP_388443.1| similar to amino acid ABC transporter (permease... 460 e-128 ref|NP_470122.1| similar to amino acid transporter [Listeria inn... 432 e-120 ref|NP_464314.1| similar to amino acid transporter [Listeria mon... 429 e-118 ref|NP_390587.1| amino acid permease [Bacillus subtilis] >gi|302... 428 e-118 >ref|ZP_00184063.1| hypothetical protein Exigu047601 [Exiguobacterium sp. 255-15] Length = 356 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 232/350 (66%), Positives = 261/350 (74%) Query: 143 MTAMADIIAVGVYVQYWFDIPQWVPAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXX 202 MTAMAD+IAVGVYV+YWFDIPQW+PAV TVK FGELEFWFALIK Sbjct: 1 MTAMADVIAVGVYVKYWFDIPQWIPAVIALLILLGFNLLTVKLFGELEFWFALIKVVTIL 60 Query: 203 XXXXXXXXXXXXXFKTDAGTVALSNIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVS 262 F TDAG V + N+W HGG+FPNG++GFLLSFQMVVFA+VGVELVGVS Sbjct: 61 ALIGVGIVLLVIGFNTDAGPVTVKNLWQHGGMFPNGVTGFLLSFQMVVFAYVGVELVGVS 120 Query: 263 AAETANPEKSIPSAINKIPLRILFFYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPI 322 AAETA+P+K+IPSAINKIPLRILFFYVGA++ LL IN WT L ESPFVKTFSL+GIP+ Sbjct: 121 AAETADPKKNIPSAINKIPLRILFFYVGALLVLLMINPWTGLNATESPFVKTFSLIGIPV 180 Query: 323 AAGIINFVVLTSAASACNSGMFSTSRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLV 382 AAGIINFVVLTSAASACNSGMFSTSRILYNL +QAP F+KLNKNHVP+NAL VSTLV Sbjct: 181 AAGIINFVVLTSAASACNSGMFSTSRILYNLGNQKQAPQSFSKLNKNHVPANALFVSTLV 240 Query: 383 LSVGALLSKLIPETAFGIVTTISAICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTP 442 +S GALLSKL+P AF IVTTISAICFIWVWGVIL+CHL+YKKT+PEL A S FKAPLTP Sbjct: 241 VSGGALLSKLLPGQAFSIVTTISAICFIWVWGVILVCHLKYKKTQPELHAASTFKAPLTP 300 Query: 443 FINYVVXXXXXXXXXXXXXXEETRPAXXXXXXXXXXXXXXYSTNRRKREK 492 F+NY+V +ETRPA Y +K +K Sbjct: 301 FVNYLVLGLFTLILIVMLVADETRPALLLTPVWFIGLFILYQLRTKKHQK 350 >ref|NP_388443.1| similar to amino acid ABC transporter (permease) [Bacillus subtilis] sp|P96704|YDGF_BACSU Hypothetical transport protein ydgF pir||H69782 amino acid ABC transporter (permease) homolog ydgF - Bacillus subtilis dbj|BAA19395.1| PROBABLE AMINO ACID TRANSPORT PERMIASE. [Bacillus subtilis] emb|CAB12369.1| ydgF [Bacillus subtilis subsp. subtilis str. 168] Length = 458 Score = 460 bits (1184), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/450 (48%), Positives = 288/450 (64%), Gaps = 1/450 (0%) Query: 43 EVAPQELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMR 102 + Q L+R L+NRH+Q K+I AGPSI+FAY+I GI F +MR Sbjct: 9 NINQQTLQRGLKNRHIQLIAIGGAIGTGLFLGSGKSIHFAGPSILFAYMITGIICFLIMR 68 Query: 103 ALGELLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWF-D 161 +LGELLLS Y SF D +DYLG AAF+TGWTYWFCWI AMAD+ AVG+Y QYW Sbjct: 69 SLGELLLSNLNYHSFVDFVQDYLGDMAAFITGWTYWFCWISIAMADLTAVGLYTQYWLPG 128 Query: 162 IPQWVPAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAG 221 +PQWVP + TVK FGELEFWFALIK F T +G Sbjct: 129 VPQWVPGLIALIILLIMNLATVKLFGELEFWFALIKVIAILALIVIGLVMIFKGFSTSSG 188 Query: 222 TVALSNIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIP 281 + +N+W+HGG+FPNG+ GF+LSFQMVVFAFVG+ELVG++A ET NPEK IP AIN IP Sbjct: 189 VSSFTNLWSHGGLFPNGMHGFILSFQMVVFAFVGIELVGLTAGETENPEKVIPKAINNIP 248 Query: 282 LRILFFYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNS 341 +R+L FY+GA++ ++SI W + P+ESPFV+ F VGI AA IINFVVLTSAASACNS Sbjct: 249 VRVLLFYIGALLVIMSIYPWDIINPSESPFVQVFVAVGIVGAASIINFVVLTSAASACNS 308 Query: 342 GMFSTSRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIV 401 +FSTSR++Y+L+++ AP AKL + VP NAL S +V+ +G L+ ++PE F ++ Sbjct: 309 AVFSTSRMVYSLAKDHNAPESMAKLTQRKVPRNALFFSAIVILIGVTLNYIMPEGVFTLI 368 Query: 402 TTISAICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXX 461 T+IS +CFI++WG+ +ICH++Y+KT+PEL +KFK PL PF NY++ Sbjct: 369 TSISTVCFIYIWGITVICHMKYRKTRPELAKTNKFKLPLYPFTNYLILAFLAFVLVVLAL 428 Query: 462 XEETRPAXXXXXXXXXXXXXXYSTNRRKRE 491 ++TR + Y + K + Sbjct: 429 AQDTRVSLFVTPVWFILLIVIYKVRKAKHQ 458 >ref|NP_470122.1| similar to amino acid transporter [Listeria innocua] pir||AD1530 amino acid transporter homolog lin0780 [imported] - Listeria innocua (strain Clip11262) emb|CAC96012.1| lin0780 [Listeria innocua] Length = 458 Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust. Identities = 213/455 (46%), Positives = 288/455 (63%), Gaps = 1/455 (0%) Query: 43 EVAPQELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMR 102 E +EL+R L+NRH+Q K+I LAGPSI+ YLI+G +FFVMR Sbjct: 2 EEQKEELQRGLKNRHIQLIAIGGAIGTGLFLGAGKSIHLAGPSIMLVYLIIGAILFFVMR 61 Query: 103 ALGELLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWF-D 161 ALGELL+ SFT+ AE ++GP A F+TGWTYWFCWI+T +A+I AVG+YV++W D Sbjct: 62 ALGELLIHNPTTGSFTEFAEQFIGPWAGFITGWTYWFCWIVTGIAEITAVGMYVKFWVPD 121 Query: 162 IPQWVPAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAG 221 +PQW+PA+ TVK FGE+EFWFA+IK +K Sbjct: 122 LPQWIPALGCVLILLLFNLATVKAFGEIEFWFAIIKVVVIIALIVIGFVLVFIGYKHGTS 181 Query: 222 TVALSNIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIP 281 T + SN+ +GG FPNG++GFLL+FQM F+FVG+ELVGV+A E +PE+++P AIN IP Sbjct: 182 TASFSNLIDYGGFFPNGVAGFLLAFQMATFSFVGIELVGVTAGEADDPERTLPKAINNIP 241 Query: 282 LRILFFYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNS 341 +RIL FY+GA++ L+SI W+ + P SPFV F+++GIP AAGIINFVVLT+A S+CNS Sbjct: 242 IRILIFYIGALLVLMSIYPWSNIDPDTSPFVSVFTMIGIPAAAGIINFVVLTAAMSSCNS 301 Query: 342 GMFSTSRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIV 401 G+FSTSR+LY LS +AP L+ N VP+ AL+ ST L +G L+ ++PE F +V Sbjct: 302 GIFSTSRMLYTLSAEGKAPKKMHHLSSNGVPATALITSTACLLIGVFLNYILPEQVFILV 361 Query: 402 TTISAICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXX 461 T+I+ ICFIWVWG+IL+ HLR++ PE+ A+SKFK PL+PF+N+V Sbjct: 362 TSIATICFIWVWGIILVAHLRFRHKHPEISAKSKFKMPLSPFMNWVSLIFFAGLLIILGF 421 Query: 462 XEETRPAXXXXXXXXXXXXXXYSTNRRKREKTNIQ 496 +TR A Y + KT I+ Sbjct: 422 AADTRIALFVTPVWFLILAIAYQILKASNRKTKIR 456 >ref|NP_464314.1| similar to amino acid transporter [Listeria monocytogenes EGD-e] pir||AC1173 amino acid transporter homolog lmo0787 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98865.1| lmo0787 [Listeria monocytogenes] Length = 458 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 213/455 (46%), Positives = 285/455 (62%), Gaps = 1/455 (0%) Query: 43 EVAPQELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMR 102 E +EL+R L+NRH+Q K+I LAGPSI+ YLI+G +FFVMR Sbjct: 2 EEQKEELQRGLKNRHIQLIAIGGAIGTGLFLGAGKSIHLAGPSIMLVYLIIGAILFFVMR 61 Query: 103 ALGELLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWF-D 161 ALGELL+ SFT+ AE ++GP A F+TGWTYWFCWI+T +A+I AVG+YV++W D Sbjct: 62 ALGELLIHNPTTGSFTEFAEQFIGPWAGFITGWTYWFCWIVTGIAEITAVGMYVKFWVPD 121 Query: 162 IPQWVPAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAG 221 +PQW+PA+ TVK FGE+EFWFA+IK +K Sbjct: 122 LPQWIPALACVLILLLFNLATVKAFGEIEFWFAIIKVVVIIALIVIGFVLVFIGYKHGTS 181 Query: 222 TVALSNIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIP 281 T + SN+ +GG FPNGI+GFLL+FQM F+FVG+ELVGV+A E +PE+++P AIN IP Sbjct: 182 TASFSNLVDYGGFFPNGIAGFLLAFQMATFSFVGIELVGVTAGEADDPERTLPKAINNIP 241 Query: 282 LRILFFYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNS 341 +RIL FY+GA++ L+SI W+ + P SPFV F+++GIP AAGIINFVVLT+A S+CNS Sbjct: 242 IRILIFYIGALLVLMSIYPWSNIDPNTSPFVSVFTMIGIPAAAGIINFVVLTAAMSSCNS 301 Query: 342 GMFSTSRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIV 401 G+FSTSR+LY LS +AP L+ N VP+ AL+ ST L +G L+ +PE F +V Sbjct: 302 GIFSTSRMLYTLSAEGKAPKKMHHLSSNGVPATALITSTACLLIGVFLNYFLPEQVFILV 361 Query: 402 TTISAICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXX 461 T+I+ ICFIWVWGVIL+ HLR++ PE+ +SKFK PL+P +N+V Sbjct: 362 TSIATICFIWVWGVILVAHLRFRHKHPEISEKSKFKMPLSPLMNWVSLIFFGGLLVILGF 421 Query: 462 XEETRPAXXXXXXXXXXXXXXYSTNRRKREKTNIQ 496 +TR A Y + KT I+ Sbjct: 422 AADTRIALFVTPVWFLILGIAYQILKASNRKTKIR 456 >ref|NP_390587.1| amino acid permease [Bacillus subtilis] sp|O06005|AAPA_BACSU Amino acid permease aapA pir||B69580 amino acid permease aapA - Bacillus subtilis emb|CAA63459.1| amino acid permease [Bacillus subtilis] emb|CAB14651.1| amino acid permease [Bacillus subtilis subsp. subtilis str. 168] Length = 459 Score = 428 bits (1100), Expect = e-118, Method: Compositional matrix adjust. Identities = 217/445 (48%), Positives = 282/445 (63%), Gaps = 1/445 (0%) Query: 47 QELKRDLENRHVQXXXXXXXXXXXXXXXXXKAIQLAGPSIIFAYLIVGIAVFFVMRALGE 106 Q+L R L+NRH+Q K+I AGPSI+FAYLI G+ FF++R+LGE Sbjct: 14 QKLSRGLKNRHIQLMAIGGAIGTGLFLGSGKSIHFAGPSILFAYLITGVFCFFIIRSLGE 73 Query: 107 LLLSKAGYQSFTDIAEDYLGPRAAFVTGWTYWFCWIMTAMADIIAVGVYVQYWF-DIPQW 165 LLLS AGY SF D DYLG AAF+TGWTYWFCWI AMAD+ AVG+Y QYW D+PQW Sbjct: 74 LLLSNAGYHSFVDFVRDYLGNMAAFITGWTYWFCWISLAMADLTAVGIYTQYWLPDVPQW 133 Query: 166 VPAVXXXXXXXXXXXXTVKNFGELEFWFALIKXXXXXXXXXXXXXXXXXXFKTDAGTVAL 225 +P + TVK FGELEFWFALIK F +G +L Sbjct: 134 LPGLLALIILLIMNLATVKLFGELEFWFALIKVIAILALIVTGILLIAKGFSAASGPASL 193 Query: 226 SNIWTHGGIFPNGISGFLLSFQMVVFAFVGVELVGVSAAETANPEKSIPSAINKIPLRIL 285 +N+W+HGG+FPNG GF+LSFQMVVFAFVG+ELVG++A ET NP+K IP AIN+IP+RIL Sbjct: 194 NNLWSHGGMFPNGWHGFILSFQMVVFAFVGIELVGLTAGETENPQKVIPKAINQIPVRIL 253 Query: 286 FFYVGAIIALLSINAWTELTPAESPFVKTFSLVGIPIAAGIINFVVLTSAASACNSGMFS 345 FYVGA+ ++ I W L P ESPFV+ FS VGI +AA +INFVVLTSAASA NS +FS Sbjct: 254 LFYVGALFVIMCIYPWNVLNPNESPFVQVFSAVGIVVAASLINFVVLTSAASAANSALFS 313 Query: 346 TSRILYNLSRNEQAPAHFAKLNKNHVPSNALLVSTLVLSVGALLSKLIPETAFGIVTTIS 405 TSR++Y+L+++ AP KL ++VPSNAL S++ + +G L+ L+PE F ++T++S Sbjct: 314 TSRMVYSLAKDHHAPGLLKKLTSSNVPSNALFFSSIAILIGVSLNYLMPEQVFTLITSVS 373 Query: 406 AICFIWVWGVILICHLRYKKTKPELQARSKFKAPLTPFINYVVXXXXXXXXXXXXXXEET 465 ICFI++WG+ +ICHL+Y+KT+ +KFK P P NY+ +T Sbjct: 374 TICFIFIWGITVICHLKYRKTRQHEAKANKFKMPFYPLSNYLTLAFLAFILVILALANDT 433 Query: 466 RPAXXXXXXXXXXXXXXYSTNRRKR 490 R A Y ++R Sbjct: 434 RIALFVTPVWFVLLIILYKVQTQQR 458 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.325 0.139 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 601,270,542 Number of extensions: 20795275 Number of successful extensions: 71137 Number of sequences better than 1.0e-05: 690 Number of HSP's gapped: 70055 Number of HSP's successfully gapped: 738 Length of query: 503 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 373 Effective length of database: 404,274,708 Effective search space: 150794466084 Effective search space used: 150794466084 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)