BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0050.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00060183.1| COG3201: Nicotinamide mononucleotide transpor... 134 2e-30 ref|NP_246777.1| unknown [Pasteurella multocida] >gi|12722263|gb... 124 2e-27 gb|AAM27449.1| PnuC transporter [Haemophilus influenzae] 117 2e-25 ref|ZP_00155654.1| COG3201: Nicotinamide mononucleotide transpor... 117 2e-25 ref|NP_873528.1| hypothetical protein [Haemophilus ducreyi 35000... 112 8e-24 >ref|ZP_00060183.1| COG3201: Nicotinamide mononucleotide transporter [Clostridium thermocellum ATCC 27405] Length = 234 Score = 134 bits (337), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 128/227 (56%), Gaps = 10/227 (4%) Query: 8 VNKSWGGWNLFELSWLVLFTAIAVGFTVISKDSXXXXXXXXXXXXXXXXAAKGNLMNYVF 67 + GW L+E+ W+ T + ++ +S KG L +YVF Sbjct: 8 IKDELSGWKLWEILWITTATMTILSLSIYLNESLIGIIMAISGVICVVLTGKGKLSSYVF 67 Query: 68 GMYNTVGYAYLAYVNGLFGEVMLNLLFFVPMNVVGFYMWKNNSNHGKLSMRQLELKGL-- 125 GM NT+ YAY+AY +G+VMLNLL++ PMNVVG+ MW + H + +++E K + Sbjct: 68 GMVNTLLYAYIAYGAKYYGDVMLNLLYYAPMNVVGWVMW---NKHMSVETKEVEKKRMKN 124 Query: 126 ---LLVGAVCIAGCLLLGFGLSFIPGQNSPYIDAITTVLSVAATLLMVRRFKEQWLVYIV 182 ++V G L G L I G + P++DA+TTVLS+ A +L V+R+ EQW+++I+ Sbjct: 125 SEIIVVFLGSALGIFLYGLILKKIGG-SLPFVDALTTVLSIVAQILCVKRYMEQWVLWII 183 Query: 183 LNMFTVLLWVIRMLEGSGEGLLMIVMWSAYLVNAVYGYYNWNKGARE 229 +++ +V +W + + G GE + ++MW Y++NA++ + W + +R Sbjct: 184 IDVVSVYMWAMAFVNG-GESVATLIMWGIYMLNAIFMFVKWYRESRR 229 >ref|NP_246777.1| unknown [Pasteurella multocida] gb|AAK03922.1| unknown [Pasteurella multocida] Length = 234 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 117/222 (52%), Gaps = 10/222 (4%) Query: 9 NKSWGGWNLFELSWLVLFTAIAVGFTVISKDSXXXXXXXXXXXXXXXXAAKGNLMNYVFG 68 N+ GGW FE+ WL LF + + DS +KG + NY FG Sbjct: 8 NEFLGGWKPFEVVWLSLFLIAQIVIYIQDPDSILGMISGISGILCVVFVSKGKVSNYFFG 67 Query: 69 MYNTVGYAYLAYVNGLFGEVMLNLLFFVPMNVVGFYMWKNNSNHGKLSMRQLELKGLLLV 128 + Y Y+A+ GE+ L ++P +G+++W+ N G + K L L Sbjct: 68 LIFAYTYFYVAWQANYLGEMNTVLYVYIPAQFIGYFLWRENLQKGSEGAESVIAKSLTLK 127 Query: 129 GAVCIAGCLLLGFGLSFI-----PGQNSPYIDAITTVLSVAATLLMVRRFKEQWLVYIVL 183 G + G + +G L F+ G +S +D +TTV+ V A LLM+ R++EQWL++I L Sbjct: 128 GWAIVLGTITIG-TLLFVQALNAAGGSSTGLDGLTTVIVVVAQLLMILRYREQWLLWIAL 186 Query: 184 NMFTVLLWVIRMLEGSGEGLLMIVMWSAYLVNAVYGYYNWNK 225 N+ +++LW + EGS L M+ M+SAYL+N++YGYYNW K Sbjct: 187 NVISIVLWT-QAKEGS---LAMVTMYSAYLLNSLYGYYNWTK 224 >gb|AAM27449.1| PnuC transporter [Haemophilus influenzae] Length = 226 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 116/217 (53%), Gaps = 13/217 (5%) Query: 13 GGWNLFELSWLVLFTAIAVGFTVISKDSXXXXXXXXXXXXXXXXAAKGNLMNYVFGMYNT 72 GW FE+ WL LF + V + DS +KG + NY FG+ Sbjct: 13 SGWKPFEVVWLALFIIAQIWAYVQTPDSWLAMISGISGILCVVLVSKGKISNYFFGLIFA 72 Query: 73 VGYAYLAYVNGLFGEVMLNLLFFVPMNVVGFYMWK---NNSNHGK-LSMRQLELKGLLLV 128 Y Y+A+ + GE+ L ++P +G++MWK NS+ G+ + + L +KG + + Sbjct: 73 YTYFYVAWGSNFLGEMNTVLYVYLPSQFIGYFMWKANMQNSDGGESVIAKALTVKGWMTL 132 Query: 129 GAVCIAGCLLLGFGLSFIPGQNSPYIDAITTVLSVAATLLMVRRFKEQWLVYIVLNMFTV 188 V G LL L G +S +D +TT+++VAA +LM+ R++EQWL++I LN+ ++ Sbjct: 133 IVVTTVGTLLFVQALQ-AAGGSSTGLDGLTTIITVAAQILMILRYREQWLLWIGLNILSI 191 Query: 189 LLWVIRMLEGSGEGLLMIVMWSAYLVNAVYGYYNWNK 225 LW E + +M+SAYL+N++YGYYNW K Sbjct: 192 FLW--------AETPAIYLMYSAYLLNSLYGYYNWTK 220 >ref|ZP_00155654.1| COG3201: Nicotinamide mononucleotide transporter [Haemophilus influenzae R2846] Length = 226 Score = 117 bits (293), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 118/221 (53%), Gaps = 13/221 (5%) Query: 13 GGWNLFELSWLVLFTAIAVGFTVISKDSXXXXXXXXXXXXXXXXAAKGNLMNYVFGMYNT 72 GW FE+ WLVLF + V + DS +KG + NY FG+ Sbjct: 13 SGWKPFEVVWLVLFIIAQIWAYVQTPDSWLAMISGISGILCVVLVSKGKISNYFFGLIFA 72 Query: 73 VGYAYLAYVNGLFGEVMLNLLFFVPMNVVGFYMWK---NNSNHGK-LSMRQLELKGLLLV 128 Y Y+A+ + GE+ L ++P +G++MWK NS+ G+ + + L +KG + + Sbjct: 73 YTYFYVAWGSNFLGEMNTVLYVYLPSQFIGYFMWKANMQNSDGGESVIAKALTVKGWITL 132 Query: 129 GAVCIAGCLLLGFGLSFIPGQNSPYIDAITTVLSVAATLLMVRRFKEQWLVYIVLNMFTV 188 + G LL L G +S +D +TT+++VAA +LM+ R++EQWL++I LN+ ++ Sbjct: 133 IVMTTVGTLLFVQALQ-AAGGSSTGLDGLTTIITVAAQILMILRYREQWLLWIGLNILSI 191 Query: 189 LLWVIRMLEGSGEGLLMIVMWSAYLVNAVYGYYNWNKGARE 229 LW E + +M+SAYL+N++YGYYNW K + Sbjct: 192 FLW--------AETPAIYLMYSAYLLNSLYGYYNWTKLVKR 224 >ref|NP_873528.1| hypothetical protein [Haemophilus ducreyi 35000HP] gb|AAP95917.1| hypothetical protein HD1041 [Haemophilus ducreyi 35000HP] Length = 227 Score = 112 bits (279), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 115/223 (51%), Gaps = 14/223 (6%) Query: 8 VNKSWGGWNLFELSWLVLFTAIAVGFTVISKDSXXXXXXXXXXXXXXXXAAKGNLMNYVF 67 + + GW FE+ WL+ F A + + S DS +KG + NY F Sbjct: 10 IKQEISGWKPFEVIWLLFFIAAQIWAYIQSPDSALAMISGIAGLICVVLVSKGKISNYFF 69 Query: 68 GMYNTVGYAYLAYVNGLFGEVMLNLLFFVPMNVVGFYMWKNN---SNHGKLSM--RQLEL 122 G+ Y Y+A+ N GE+ L ++P +G+++WK N + G ++ R L L Sbjct: 70 GLIFAYTYFYVAWGNNFIGEMNSVLYVYLPAQFIGYFLWKANLQQDSKGSTAVIARSLSL 129 Query: 123 KGLLLVGAVCIAGCLLLGFGLSFIPGQNSPYIDAITTVLSVAATLLMVRRFKEQWLVYIV 182 KG +++ LL L + G +S +D +TT+ + A LLM+ R++EQW+++I Sbjct: 130 KGWMILLLGITVSTLLFIQALK-VAGGSSTGLDGLTTITTFTAQLLMILRYREQWILWIA 188 Query: 183 LNMFTVLLWVIRMLEGSGEGLLMIVMWSAYLVNAVYGYYNWNK 225 LN+ ++LLW E M +M+ AYL+N++YG YNW+K Sbjct: 189 LNILSILLW--------AETPAMYLMYVAYLLNSLYGLYNWSK 223 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.141 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 325,713,762 Number of extensions: 11674783 Number of successful extensions: 46674 Number of sequences better than 1.0e-05: 95 Number of HSP's gapped: 46553 Number of HSP's successfully gapped: 95 Length of query: 232 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 110 Effective length of database: 425,995,500 Effective search space: 46859505000 Effective search space used: 46859505000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 124 (52.4 bits)