BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0599.0046.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_347497.1| ABC-type multidrug transport system, ATPase com... 313 2e-84 ref|NP_780876.1| ABC-type multidrug transport system [Clostridiu... 282 8e-75 ref|NP_349340.1| ABC-type multidrug transport system, ATPase com... 258 9e-68 ref|NP_782390.1| bacitracin transport ATP-binding protein bcrA [... 247 2e-64 ref|NP_561865.1| probable ABC transporter [Clostridium perfringe... 243 3e-63 >ref|NP_347497.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] pir||B97006 ABC-type multidrug transport system, ATPase component CAC0861 [imported] - Clostridium acetobutylicum gb|AAK78837.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] Length = 307 Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 143/307 (46%), Positives = 218/307 (71%) Query: 1 MSEYVLQTNQLTKKFKGSVALDKVNLSIRKGSIYGFIGQNGAGKSTLMRIVTGLAFPSGG 60 M + VL+T L+K++K LD VN++I KG IYGFIGQNGAGK+TLM++++GL G Sbjct: 1 MKDAVLKTVNLSKRYKDVTVLDNVNITINKGDIYGFIGQNGAGKTTLMKLISGLIIKDSG 60 Query: 61 SIELFGASDELALTQARKRMGLIIESPSLFPHMTAAENLEVNRLLRGIPGKDCVARMLEL 120 +IELFG +D + RKRMG +IE+P+L+ + + +NLE+NR+ +GIPG++ + ++L++ Sbjct: 61 TIELFGENDTRNIENMRKRMGCLIETPALYDYSSVYDNLEINRIQKGIPGRESIDKVLKM 120 Query: 121 VGLQGTGRKKVKNFSLGMKQRLGLAIAMLSDPEFLILDEPTNGLDPMSVIEMRELLKQLN 180 VGL +K+V+ S+GMKQ+LGLA+A++ DPEFLILDEP NGLDPMS+IE+R+LL +LN Sbjct: 121 VGLYNERKKQVRKLSMGMKQKLGLAMALIGDPEFLILDEPINGLDPMSIIEIRKLLNKLN 180 Query: 181 QERGXXXXXXXXXXXXXXXXXXXYGIIHHGRLLEQLTAQELNDKCQQYVYIKADNPDKAV 240 +E YGIIH+GRL+EQ+T++EL ++CQ+++YI+ DN ++AV Sbjct: 181 KEFDVTILISSHILSELYQFANSYGIIHNGRLVEQITSRELEERCQKFLYIRTDNAERAV 240 Query: 241 TVIQNGLRTNDFEVMPDGAIKLYGHMEQPGKVSSALFSAGLEIEQFMPMGEDLESYFMKR 300 I+ L+T ++EVM D AIKLY ++++P KV+S L + G +++ G++LE YF K Sbjct: 241 FTIERILKTQNYEVMHDNAIKLYEYLDEPSKVASVLLNNGSLVDEIALKGDNLEDYFSKL 300 Query: 301 IGGAGHV 307 + +V Sbjct: 301 VWRNKNV 307 >ref|NP_780876.1| ABC-type multidrug transport system [Clostridium tetani E88] gb|AAO34813.1| ABC-type multidrug transport system [Clostridium tetani E88] Length = 307 Score = 282 bits (721), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 130/304 (42%), Positives = 204/304 (67%) Query: 1 MSEYVLQTNQLTKKFKGSVALDKVNLSIRKGSIYGFIGQNGAGKSTLMRIVTGLAFPSGG 60 MS+ VL+ +TKK+ +A++ V++ I +G IYG +G+NGAGK+TL++++ GL PS G Sbjct: 1 MSDTVLKVKNITKKYHNHLAVNNVSMEINQGEIYGLVGKNGAGKTTLLKMICGLTIPSIG 60 Query: 61 SIELFGASDELALTQARKRMGLIIESPSLFPHMTAAENLEVNRLLRGIPGKDCVARMLEL 120 I LF + + L ++R R G IIE+PS FP+++A +NLE R+ +GI K+CV +++ Sbjct: 61 EISLFNETSQNGLNKSRTRTGSIIETPSFFPYLSAKKNLEYYRIQKGIAEKNCVDEIIKA 120 Query: 121 VGLQGTGRKKVKNFSLGMKQRLGLAIAMLSDPEFLILDEPTNGLDPMSVIEMRELLKQLN 180 V L+ G KK KNFSLGMKQRLGLA+A++++P+ LILDEP NGLDP ++E RE+L +LN Sbjct: 121 VNLEDAGNKKFKNFSLGMKQRLGLALALMANPDLLILDEPINGLDPTGIVEFREILLKLN 180 Query: 181 QERGXXXXXXXXXXXXXXXXXXXYGIIHHGRLLEQLTAQELNDKCQQYVYIKADNPDKAV 240 +ER YG I+ G L+EQL+++EL +KC++ + +K DN +KAV Sbjct: 181 KERNTTIIISSHILGELSQMATMYGFINKGELVEQLSSKELQEKCKRCLSVKVDNTEKAV 240 Query: 241 TVIQNGLRTNDFEVMPDGAIKLYGHMEQPGKVSSALFSAGLEIEQFMPMGEDLESYFMKR 300 T+I+ L ++++V+ + I+LY H++ P V+ +L G+ + +G +LE+YF+ Sbjct: 241 TIIEKELNCSNYKVLNNNEIRLYDHIDTPEIVAQSLVYNGVMLYSMNQVGANLENYFINL 300 Query: 301 IGGA 304 IGGA Sbjct: 301 IGGA 304 >ref|NP_349340.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] pir||E97236 ABC-type multidrug transport system, ATPase component CAC2734 [imported] - Clostridium acetobutylicum gb|AAK80680.1| ABC-type multidrug transport system, ATPase component [Clostridium acetobutylicum] Length = 301 Score = 258 bits (660), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 131/299 (43%), Positives = 193/299 (64%), Gaps = 3/299 (1%) Query: 5 VLQTNQLTKKFKGSVALDKVNLSIRKGSIYGFIGQNGAGKSTLMRIVTGLAFPSGGSIEL 64 VLQTN LTKK+ +A++K+N+ + KG IYG IG+NGAGK+T+M+I GL S G I+L Sbjct: 4 VLQTNCLTKKYGKQLAVNKINMKVEKGDIYGLIGKNGAGKTTIMKIACGLIHQSQGDIQL 63 Query: 65 FGASDELALTQARKRMGLIIESPSLFPHMTAAENLEVNRLLRGIPGKDCVARMLELVGLQ 124 F +SD + + RKR+G IIE P+L+P+MTA ENL L GI V +L LVGL Sbjct: 64 FESSD---VEKGRKRIGCIIEYPALYPYMTARENLIYYDKLLGIVDYSNVDEVLNLVGLG 120 Query: 125 GTGRKKVKNFSLGMKQRLGLAIAMLSDPEFLILDEPTNGLDPMSVIEMRELLKQLNQERG 184 TG+KK K FSLGMKQRL +AI++L +P+FLILDEP NGLDP + E+RELL +LN E Sbjct: 121 DTGKKKTKAFSLGMKQRLSIAISLLGNPDFLILDEPINGLDPYGIKEVRELLLRLNTENE 180 Query: 185 XXXXXXXXXXXXXXXXXXXYGIIHHGRLLEQLTAQELNDKCQQYVYIKADNPDKAVTVIQ 244 YGII+ G L+++ A ELN++C++ + + ++ +KA +++ Sbjct: 181 ITILISSHILGELAKIATKYGIINKGVLIDEFKASELNERCKKCLNVVVNDSEKAAYILK 240 Query: 245 NGLRTNDFEVMPDGAIKLYGHMEQPGKVSSALFSAGLEIEQFMPMGEDLESYFMKRIGG 303 N ++++DFEV +G I +Y ++ P +++ L G+ + G D+E+YF+K +GG Sbjct: 241 NDIKSSDFEVFNEGKICIYDCLDIPAQINKELIENGVLVSSIGLEGNDIEAYFVKMMGG 299 >ref|NP_782390.1| bacitracin transport ATP-binding protein bcrA [Clostridium tetani E88] gb|AAO36327.1| bacitracin transport ATP-binding protein bcrA [Clostridium tetani E88] Length = 304 Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 124/301 (41%), Positives = 188/301 (62%), Gaps = 2/301 (0%) Query: 3 EYVLQTNQLTKKFKGSVALDKVNLSIRKGSIYGFIGQNGAGKSTLMRIVTGLAFPSGGSI 62 EYVL+T LTK +K +D +NL+++ G IYGFIG+NGAGK++ +++V GL+ S G I Sbjct: 2 EYVLRTYNLTKTYKNVNVVDNLNLNVKTGDIYGFIGKNGAGKTSTIKMVMGLSKASSGEI 61 Query: 63 ELFGASDELALTQARKRMGLIIESPSLFPHMTAAENLEVNRLLRGIPGKDCVARMLELVG 122 ELFG D++ + R+G +I+ P + ++T ENLE++R + G K+ + + LE+VG Sbjct: 62 ELFG--DKILNNKCYGRIGSLIDYPGFYLNLTGEENLEIHRRMMGFTRKNSINKALEMVG 119 Query: 123 LQGTGRKKVKNFSLGMKQRLGLAIAMLSDPEFLILDEPTNGLDPMSVIEMRELLKQLNQE 182 L+ KKVKNFSLGM+QRLG+A A+L PEFLILDEPTNGLDP+ + E+REL+ LNQ+ Sbjct: 120 LKNIEDKKVKNFSLGMRQRLGIARALLHHPEFLILDEPTNGLDPIGIKEIRELILDLNQK 179 Query: 183 RGXXXXXXXXXXXXXXXXXXXYGIIHHGRLLEQLTAQELNDKCQQYVYIKADNPDKAVTV 242 G GIIH GRL+E+++ EL + + Y+ +K DN KA + Sbjct: 180 FGITVLISSHILSEIQLLVTKIGIIHKGRLIEEISYDELKKRNRHYIQLKVDNDKKASFI 239 Query: 243 IQNGLRTNDFEVMPDGAIKLYGHMEQPGKVSSALFSAGLEIEQFMPMGEDLESYFMKRIG 302 ++ L D+ V DG I++Y + G ++ L S + +++ ++LE YF++ G Sbjct: 240 LEKKLDIRDYVVWEDGIIRIYEKLNVVGNINKILVSNDVRVDEIYINLDNLEDYFIRLTG 299 Query: 303 G 303 G Sbjct: 300 G 300 >ref|NP_561865.1| probable ABC transporter [Clostridium perfringens] dbj|BAB80655.1| probable ABC transporter [Clostridium perfringens str. 13] Length = 306 Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 125/299 (41%), Positives = 190/299 (63%) Query: 5 VLQTNQLTKKFKGSVALDKVNLSIRKGSIYGFIGQNGAGKSTLMRIVTGLAFPSGGSIEL 64 ++ L K + LD ++++++KG IYG +G+NGAGK+TL+RI+ LA G IEL Sbjct: 4 IISIRNLNKNYGKKNILDNLSMNLKKGDIYGLVGKNGAGKTTLIRIILSLANYDSGEIEL 63 Query: 65 FGASDELALTQARKRMGLIIESPSLFPHMTAAENLEVNRLLRGIPGKDCVARMLELVGLQ 124 FG DE K++G IIE+PS + +TA +NLE ++ RGI G+ + +LE+VGL Sbjct: 64 FGEIDEKKKLYEHKKIGNIIETPSFYSFLTAKQNLEYYKIQRGIVGEKSIDEILEMVGLG 123 Query: 125 GTGRKKVKNFSLGMKQRLGLAIAMLSDPEFLILDEPTNGLDPMSVIEMRELLKQLNQERG 184 G KK K FSLGMKQRLGLA+A+L +PE LILDEPTNG+DPM + E+RE+L LN++ G Sbjct: 124 DVGNKKFKKFSLGMKQRLGLALALLGEPELLILDEPTNGMDPMGIKEVREVLINLNKKNG 183 Query: 185 XXXXXXXXXXXXXXXXXXXYGIIHHGRLLEQLTAQELNDKCQQYVYIKADNPDKAVTVIQ 244 YG + G+++E+++++ELN+KC+ ++ IK D+ KA +++ Sbjct: 184 VTILVSSHILGELSQLANCYGFLKDGKIIEEISSEELNEKCRNHLLIKVDDCKKAAVILE 243 Query: 245 NGLRTNDFEVMPDGAIKLYGHMEQPGKVSSALFSAGLEIEQFMPMGEDLESYFMKRIGG 303 L N +EV+PD IK+Y +++P ++ AL G+E+ +G +LE YF+ IGG Sbjct: 244 RVLDNNSYEVLPDRFIKIYNKLDEPQLINRALVENGVEVYSLERIGVNLEDYFVDLIGG 302 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.138 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 412,792,404 Number of extensions: 15869304 Number of successful extensions: 108668 Number of sequences better than 1.0e-05: 17750 Number of HSP's gapped: 87757 Number of HSP's successfully gapped: 18696 Length of query: 307 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 182 Effective length of database: 417,850,203 Effective search space: 76048736946 Effective search space used: 76048736946 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)